Guide to the Human Genome
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Name: C15orf53 Sequence: fasta or formatted (179aa) NCBI GI: 46409512
Description:

hypothetical protein LOC400359

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         12           1
 C cysteine            3.9          7           1
 D aspartate           3.4          6           1
 E glutamate           3.9          7           1
 F phenylalanine       3.4          6           1
 G glycine             8.4         15           2
 H histidine           2.2          4           1
 I isoleucine          2.8          5           1
 K lysine              4.5          8           1
 L leucine            10.6         19           2
 M methionine          1.1          2           1
 N asparagine          1.7          3           1
 P proline             7.3         13           1
 Q glutamine           6.1         11           2
 R arginine            9.5         17           3
 S serine             12.3         22           2
 T threonine           4.5          8           1
 V valine              4.5          8           1
 W tryptophan          2.2          4           1
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC400359 
CR1                   0.014   complement receptor 1 isoform S precursor 
CR1                   0.014   complement receptor 1 isoform F precursor 
TOX4                  0.014   epidermal Langerhans cell protein LCP1 
TCEB3B                0.014   elongin A2 
FYB                   0.012   FYN binding protein (FYB-120/130) isoform 2 
FYB                   0.012   FYN binding protein (FYB-120/130) isoform 1 
CR1L                  0.009   complement component (3b/4b) receptor 1-like 
SNX26                 0.009   sorting nexin 26 
TCEB3CL               0.009   transcription elongation factor B polypeptide 3C-li...
TCEB3C                0.009   transcription elongation factor B polypeptide 3C [H...
FAM125A               0.009   family with sequence similarity 125, member A 
SCRIB                 0.009   scribble isoform b 
SCRIB                 0.009   scribble isoform a 
LOC100293806          0.009   PREDICTED: hypothetical protein 
LOC100291093          0.009   PREDICTED: hypothetical protein XP_002347840 
LOC100289073          0.009   PREDICTED: hypothetical protein XP_002343617 
C15orf39              0.009   hypothetical protein LOC56905 
ESPL1                 0.006   separase 
LOC100129906          0.006   PREDICTED: hypothetical protein 
NCAN                  0.006   chondroitin sulfate proteoglycan 3 
CDKL3                 0.006   cyclin-dependent kinase-like 3 isoform 1 
CDKL3                 0.006   cyclin-dependent kinase-like 3 isoform 2 
NLRP10                0.006   NLR family, pyrin domain containing 10 
LOC100130325          0.006   PREDICTED: hypothetical protein 
LOC100130325          0.006   PREDICTED: hypothetical protein 
LOC100130325          0.006   PREDICTED: hypothetical protein 
LOC100287688          0.006   PREDICTED: hypothetical protein XP_002342270 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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