Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 46198304
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46198304 coiled-coil-helix-coiled-coil-helix domain
containing 8 [Homo sapiens]
(87 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46198304 coiled-coil-helix-coiled-coil-helix domain containin... 186 3e-48
gi|90193619 nuclear matrix transcription factor 4 isoform c [Hom... 36 0.007
gi|90193617 nuclear matrix transcription factor 4 isoform b [Hom... 36 0.007
gi|90193615 nuclear matrix transcription factor 4 isoform b [Hom... 36 0.007
gi|90193613 nuclear matrix transcription factor 4 isoform a [Hom... 36 0.007
gi|90193611 nuclear matrix transcription factor 4 isoform a [Hom... 36 0.007
gi|36054194 nuclear matrix transcription factor 4 isoform a [Hom... 36 0.007
gi|209180475 nuclear matrix transcription factor 4 isoform d [Ho... 36 0.007
gi|148746195 trichohyalin [Homo sapiens] 30 0.31
gi|31542652 coiled-coil domain containing 94 [Homo sapiens] 30 0.53
gi|4507379 TATA box binding protein [Homo sapiens] 29 0.70
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 29 0.70
gi|225007652 processing of precursor 1 [Homo sapiens] 29 0.91
gi|225007650 processing of precursor 1 [Homo sapiens] 29 0.91
gi|225007648 processing of precursor 1 [Homo sapiens] 29 0.91
gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-li... 29 0.91
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 29 0.91
gi|17017963 forkhead box P2 isoform I [Homo sapiens] 28 1.2
gi|22538413 forkhead box P2 isoform III [Homo sapiens] 28 1.2
gi|149999352 forkhead box P2 isoform II [Homo sapiens] 28 1.2
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 28 2.0
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 28 2.0
gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo sap... 28 2.0
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens] 28 2.0
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens] 28 2.0
gi|194473684 chondroitin sulfate N-acetylgalactosaminyltransfera... 28 2.0
gi|194473683 chondroitin sulfate N-acetylgalactosaminyltransfera... 28 2.0
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 28 2.0
gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1 ... 27 2.6
gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1 [... 27 2.6
>gi|46198304 coiled-coil-helix-coiled-coil-helix domain containing
8 [Homo sapiens]
Length = 87
Score = 186 bits (473), Expect = 3e-48
Identities = 87/87 (100%), Positives = 87/87 (100%)
Query: 1 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA 60
MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA
Sbjct: 1 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA 60
Query: 61 FKDCMSEQQARRQEELQRRQEQAGAHH 87
FKDCMSEQQARRQEELQRRQEQAGAHH
Sbjct: 61 FKDCMSEQQARRQEELQRRQEQAGAHH 87
>gi|90193619 nuclear matrix transcription factor 4 isoform c [Homo
sapiens]
Length = 461
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 320 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 379
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 380 ASQASQQQQQQQQQQQQQQQQPPPH 404
>gi|90193617 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 359 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 418
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 419 ASQASQQQQQQQQQQQQQQQQPPPH 443
>gi|90193615 nuclear matrix transcription factor 4 isoform b [Homo
sapiens]
Length = 500
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 359 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 418
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 419 ASQASQQQQQQQQQQQQQQQQPPPH 443
>gi|90193613 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 375 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 434
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 435 ASQASQQQQQQQQQQQQQQQQPPPH 459
>gi|90193611 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 375 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 434
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 435 ASQASQQQQQQQQQQQQQQQQPPPH 459
>gi|36054194 nuclear matrix transcription factor 4 isoform a [Homo
sapiens]
Length = 516
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 375 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 434
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 435 ASQASQQQQQQQQQQQQQQQQPPPH 459
>gi|209180475 nuclear matrix transcription factor 4 isoform d [Homo
sapiens]
Length = 577
Score = 35.8 bits (81), Expect = 0.007
Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 3 TSVPQGHTWTQRVKKDDEEEDPLD-QLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF 61
T + +T + K + +P D Q ++ AA+ A + AQ Q Q Q Q QA
Sbjct: 436 TICSRAYTSETYLMKHMRKHNPPDLQQQVQAAAAAAAVAQAQAQAQAQAQAQAQAQAQAQ 495
Query: 62 KDCMSEQQARRQEELQRRQEQAGAH 86
S+QQ ++Q++ Q++Q+Q H
Sbjct: 496 ASQASQQQQQQQQQQQQQQQQPPPH 520
>gi|148746195 trichohyalin [Homo sapiens]
Length = 1943
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/70 (24%), Positives = 35/70 (50%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
Q+++++ EEE QL +E + + + + Q++ + EQQ RR
Sbjct: 362 QQLRREQEEERREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRREQQLRR 421
Query: 73 QEELQRRQEQ 82
+++L+R QE+
Sbjct: 422 EQQLRREQEE 431
Score = 29.3 bits (64), Expect = 0.70
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Query: 9 HTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQD--WR-QCQPQVQAFKDCM 65
+ W + + +E+E L Q R A FA QE + + W+ + Q + Q + +
Sbjct: 1821 YRWEEEQLQLEEQEQRLRQERDRQYRAEEQFATQEKSRREEQELWQEEEQKRRQERERKL 1880
Query: 66 SEQQARRQEELQRRQEQAG 84
E+ RRQ++ ++R Q G
Sbjct: 1881 REEHIRRQQKEEQRHRQVG 1899
Score = 28.9 bits (63), Expect = 0.91
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 47 QHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
+ ++WR+ + ++ ++ + E++ +RQ ELQ +EQ
Sbjct: 242 EEKEWRKRETVLRKEEEKLQEEEPQRQRELQEEEEQ 277
Score = 28.5 bits (62), Expect = 1.2
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
+R +K EEE L Q R F +E + Q ++ +Q Q + K EQQ RR
Sbjct: 1443 ERERKFLEEEQQLRQERHRK------FREEEQLLQEREEQQLHRQERDRKFLEEEQQLRR 1496
Query: 73 QEELQRRQEQ 82
QE ++ +EQ
Sbjct: 1497 QERDRKFREQ 1506
Score = 28.1 bits (61), Expect = 1.6
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
Q ++++ +EE+ Q + R Q Q ++ R+ Q + + ++ +Q+ RR
Sbjct: 284 QELRRERQEEEQQQQRLRREQ--------QLRRKQEEERREQQEERREQQERREQQEERR 335
Query: 73 QEELQRRQEQ 82
+++L+R QE+
Sbjct: 336 EQQLRREQEE 345
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 17/70 (24%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
QR ++ EEE+ L +L QE + Q+ Q Q +++ EQQ RR
Sbjct: 266 QRQRELQEEEEQLRKLER-----------QELRRERQEEEQQQQRLRR------EQQLRR 308
Query: 73 QEELQRRQEQ 82
++E +RR++Q
Sbjct: 309 KQEEERREQQ 318
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
QR+K+++ EE+ QL+ Q+ + + Q R+ Q + ++ EQ+ +R
Sbjct: 618 QRLKREEPEEERRQQLLKSEEQEERR---QQQLRREQQERREQRLKREEEEERLEQRLKR 674
Query: 73 QEELQRRQEQ 82
+ E +RR+++
Sbjct: 675 EHEEERREQE 684
Score = 26.6 bits (57), Expect = 4.5
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 8/72 (11%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMS--EQQA 70
QR+K++ EE L+Q + R +++ + Q ++ +P+ + + + EQ+
Sbjct: 588 QRLKREQEER--LEQRLKREEVER----LEQEERREQRLKREEPEEERRQQLLKSEEQEE 641
Query: 71 RRQEELQRRQEQ 82
RRQ++L+R Q++
Sbjct: 642 RRQQQLRREQQE 653
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 11 WTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAF--------K 62
W ++ +K DE + +QL+ +QE Q+++ + Q + + +
Sbjct: 1016 WERQYRKKDELQQEEEQLLREE---REKRRLQERERQYREEEELQQEEEQLLGEERETRR 1072
Query: 63 DCMSEQQARRQEELQRRQEQ 82
E+Q R++EELQ+ +EQ
Sbjct: 1073 RQELERQYRKEEELQQEEEQ 1092
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 20 EEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRR 79
E+E+ +Q + R QE + Q R+ Q + + + EQQ RR+++L+R
Sbjct: 342 EQEERREQQLRRE---------QEEERREQQLRREQEEERREQQLRREQQLRREQQLRRE 392
Query: 80 QE 81
Q+
Sbjct: 393 QQ 394
Score = 25.8 bits (55), Expect = 7.7
Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE Q ++ R+ Q++ ++ EQQ RR++E +RR++Q
Sbjct: 325 QERREQQEERRE--QQLRREQEERREQQLRREQEEERREQQ 363
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/71 (26%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
++++++ EE+ Q R F +E + Q ++ +Q +PQ + K E+Q +
Sbjct: 1777 EQLRQEREEQQLRSQESDRK------FREEEQLRQEREEQQLRPQQRDGKYRWEEEQLQL 1830
Query: 73 QEELQR-RQEQ 82
+E+ QR RQE+
Sbjct: 1831 EEQEQRLRQER 1841
>gi|31542652 coiled-coil domain containing 94 [Homo sapiens]
Length = 323
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQ----AFKDCMSEQ 68
Q+ ++D+E +P+ L +R+ + V E + + +D Q Q V + +SE+
Sbjct: 122 QKEREDEELNNPMKVLENRTKDSKLEMEVLENLQELKDLNQRQAHVDFEAMLRQHRLSEE 181
Query: 69 QARRQEELQRRQEQA 83
+ RRQ++ + QE A
Sbjct: 182 ERRRQQQEEDEQETA 196
>gi|4507379 TATA box binding protein [Homo sapiens]
Length = 339
Score = 29.3 bits (64), Expect = 0.70
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGA 85
Q+ Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+QA A
Sbjct: 55 QQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQAVA 98
Score = 28.1 bits (61), Expect = 1.6
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 41 VQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGA 85
++E Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q A
Sbjct: 52 LEEQQRQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQA 96
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 29.3 bits (64), Expect = 0.70
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 11/72 (15%)
Query: 11 WTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQA 70
W Q K ++EE +Q QE M Q Q+ + + Q K C E++
Sbjct: 581 WRQEEKIREQEEKIREQ--------EEKIREQEEMTQEQEEKMGE---QEEKMCEQEEKM 629
Query: 71 RRQEELQRRQEQ 82
+ QEE RRQE+
Sbjct: 630 QEQEEKMRRQEE 641
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M Q Q+ + + Q K C E++ + QEE RRQE+
Sbjct: 660 QEEMMQEQEEKMWE---QEEKMCEQEEKMQEQEEKMRRQEE 697
>gi|225007652 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 40 AVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
A ++ + H+DW C PQ D + +++E+ +R + Q
Sbjct: 879 AKEDFLQLHEDWHYCGPQESKHSDPFRSKILKQKEKKKREKRQ 921
>gi|225007650 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 40 AVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
A ++ + H+DW C PQ D + +++E+ +R + Q
Sbjct: 879 AKEDFLQLHEDWHYCGPQESKHSDPFRSKILKQKEKKKREKRQ 921
>gi|225007648 processing of precursor 1 [Homo sapiens]
Length = 1024
Score = 28.9 bits (63), Expect = 0.91
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 40 AVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
A ++ + H+DW C PQ D + +++E+ +R + Q
Sbjct: 879 AKEDFLQLHEDWHYCGPQESKHSDPFRSKILKQKEKKKREKRQ 921
>gi|239756241 PREDICTED: golgi autoantigen, golgin subfamily a-like
[Homo sapiens]
Length = 899
Score = 28.9 bits (63), Expect = 0.91
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M + + R+ + +++ ++ M EQ+ + QE+ ++ QEQ
Sbjct: 706 QEKMREEESMREREKKMREEEEMMREQEEKMQEQEEKMQEQ 746
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 11 WTQRVKKDDEEEDPLDQLISRSGCAASH----FAVQECMAQHQDWRQCQPQVQAFKDCMS 66
W Q K D+E+ DQ + +E M + + R+ + +++ ++ M
Sbjct: 547 WEQEEKMRDQEQKMWDQEERMEKKTQEQEKKTWDQEEKMREEERMREREKKMREEEEMMR 606
Query: 67 EQQARRQEELQRRQEQ 82
EQ+ + QE+ ++ QEQ
Sbjct: 607 EQEEKMQEQEEKMQEQ 622
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/42 (30%), Positives = 27/42 (64%)
Query: 41 VQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
+Q+ Q Q +Q Q Q+Q + + +QQ ++Q++ Q++Q+Q
Sbjct: 3931 LQQQQQQQQLQQQQQQQLQQQQQQLQQQQQQQQQQFQQQQQQ 3972
Score = 26.6 bits (57), Expect = 4.5
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 28 LISRSG---CAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
L+S SG +A + + Q Q +Q Q Q + + +QQ +Q++LQ++Q+Q
Sbjct: 3880 LMSHSGQPKLSAQPMGSLQQLQQQQQLQQQQQLQQQQQQQLQQQQQLQQQQLQQQQQQ 3937
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
Q+ Q Q +Q Q Q Q + + +QQ +Q++LQ++Q+Q
Sbjct: 3908 QQQQLQQQQQQQLQQQQQLQQQQLQQQQ--QQQQLQQQQQQ 3946
>gi|17017963 forkhead box P2 isoform I [Homo sapiens]
Length = 715
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 43 ECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAH 86
+ + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 149 QLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 192
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 45 MAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAHH 87
+ Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 150 LLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 192
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 38 HFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
H + + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q
Sbjct: 147 HLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 191
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGA 85
Q+ Q Q +Q Q Q Q + +QA+ Q++ Q++Q+Q A
Sbjct: 169 QQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAA 212
>gi|22538413 forkhead box P2 isoform III [Homo sapiens]
Length = 623
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 43 ECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAH 86
+ + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 57 QLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 100
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 45 MAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAHH 87
+ Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 58 LLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 100
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 38 HFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
H + + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q
Sbjct: 55 HLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 99
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGA 85
Q+ Q Q +Q Q Q Q + +QA+ Q++ Q++Q+Q A
Sbjct: 77 QQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAA 120
>gi|149999352 forkhead box P2 isoform II [Homo sapiens]
Length = 740
Score = 28.5 bits (62), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 43 ECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAH 86
+ + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 174 QLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 217
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 45 MAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGAHH 87
+ Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q H
Sbjct: 175 LLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQH 217
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 38 HFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
H + + Q Q +Q Q Q Q + +QQ ++Q++ Q++Q+Q
Sbjct: 172 HLQLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 216
Score = 26.2 bits (56), Expect = 5.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQAGA 85
Q+ Q Q +Q Q Q Q + +QA+ Q++ Q++Q+Q A
Sbjct: 194 QQQQQQQQQQQQQQQQQQQQQQQHPGKQAKEQQQQQQQQQQLAA 237
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M Q Q+ + + Q K C E++ + QEE RRQE+
Sbjct: 694 QEEMMQEQEEKMWE---QEEKMCEQEEKMQEQEEKMRRQEE 731
Score = 26.6 bits (57), Expect = 4.5
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Query: 11 WTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQA 70
W Q +K E+E+ + + + QE M Q Q+ + + Q K C E++
Sbjct: 608 WKQE-EKIREQEEKIQEQEEKIREQEEKIREQEEMTQEQEEKMGE---QEEKMCEQEEKM 663
Query: 71 RRQEELQRRQEQ 82
+ QEE RQE+
Sbjct: 664 QEQEETMWRQEE 675
Score = 25.8 bits (55), Expect = 7.7
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQD---WRQCQP-QVQAFKDCMSEQ 68
++ +K E+E+ + + G QE Q Q+ WRQ + + Q K E+
Sbjct: 630 EQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEETMWRQEEKIREQEKKIREQEE 689
Query: 69 QARRQEELQRRQEQ 82
+ R QEE+ + QE+
Sbjct: 690 KIREQEEMMQEQEE 703
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M Q Q+ + + Q K C E++ + QEE RRQE+
Sbjct: 604 QEEMMQEQEEKMWE---QEEKMCEQEEKMQEQEEKMRRQEE 641
>gi|239745095 PREDICTED: hypothetical protein LOC645202 [Homo
sapiens]
Length = 570
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M Q Q+ + + Q K C E++ + QEE RRQE+
Sbjct: 514 QEEMMQEQEEKMWE---QEEKMCEQEEKMQEQEEKMRRQEE 551
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 42 QECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQ 82
QE M Q Q+ + + Q K C E + + QEE RRQE+
Sbjct: 458 QEEMMQEQEEKMGE---QEGKMCEQEAKMQEQEEKMRRQEE 495
>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
Length = 788
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 1 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA 60
+ST+ PQ Q+V +++ Q Q+ Q Q +Q Q Q QA
Sbjct: 144 VSTATPQTQLQLQQVALQQQQQQQQFQ------------QQQQAALQQQQQQQQQQQFQA 191
Query: 61 FKDCMSEQ-------QARRQEELQRRQEQAGAHH 87
+ M +Q Q + Q++ Q++Q HH
Sbjct: 192 QQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHH 225
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 49 QDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQA 83
Q +Q Q Q+Q +QQ ++Q++ Q++Q+QA
Sbjct: 229 QQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQA 263
>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
Length = 748
Score = 27.7 bits (60), Expect = 2.0
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 19/94 (20%)
Query: 1 MSTSVPQGHTWTQRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQA 60
+ST+ PQ Q+V +++ Q Q+ Q Q +Q Q Q QA
Sbjct: 144 VSTATPQTQLQLQQVALQQQQQQQQFQ------------QQQQAALQQQQQQQQQQQFQA 191
Query: 61 FKDCMSEQ-------QARRQEELQRRQEQAGAHH 87
+ M +Q Q + Q++ Q++Q HH
Sbjct: 192 QQSAMQQQFQAVVQQQQQLQQQQQQQQHLIKLHH 225
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 49 QDWRQCQPQVQAFKDCMSEQQARRQEELQRRQEQA 83
Q +Q Q Q+Q +QQ ++Q++ Q++Q+QA
Sbjct: 229 QQIQQQQQQLQRIAQLQLQQQQQQQQQQQQQQQQA 263
>gi|194473684 chondroitin sulfate
N-acetylgalactosaminyltransferase 1 [Homo sapiens]
Length = 532
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 17 KDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEEL 76
K DEE+ L + S +G +QE QH++ + + Q A+ +EEL
Sbjct: 37 KGDEEQLALPRANSPTGKEGYQAVLQEWEEQHRN----------YVSSLKRQIAQLKEEL 86
Query: 77 QRRQEQ 82
Q R EQ
Sbjct: 87 QERSEQ 92
>gi|194473683 chondroitin sulfate
N-acetylgalactosaminyltransferase 1 [Homo sapiens]
Length = 532
Score = 27.7 bits (60), Expect = 2.0
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 10/66 (15%)
Query: 17 KDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARRQEEL 76
K DEE+ L + S +G +QE QH++ + + Q A+ +EEL
Sbjct: 37 KGDEEQLALPRANSPTGKEGYQAVLQEWEEQHRN----------YVSSLKRQIAQLKEEL 86
Query: 77 QRRQEQ 82
Q R EQ
Sbjct: 87 QERSEQ 92
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 27.7 bits (60), Expect = 2.0
Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 13 QRVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQPQVQAFKDCMSEQQARR 72
+R +K EEE+ + ++ CA + E + + QP + ++ E++ R
Sbjct: 460 ERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILEK----QPSPEEIREREREKERER 515
Query: 73 QEELQRRQEQ 82
++EL++ QEQ
Sbjct: 516 EKELEKEQEQ 525
>gi|196115147 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 14 RVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQP--QVQAFKDCMSEQQAR 71
R+ D + P Q +++ + H +Q+ Q Q ++ +P QVQ + Q
Sbjct: 329 RIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQVQPQLQQEAEPQKQVQPQVQPQAHSQGP 388
Query: 72 RQEELQRRQE 81
RQ +LQ+ E
Sbjct: 389 RQVQLQQEAE 398
>gi|42544179 CDKN1A interacting zinc finger protein 1 isoform 1
[Homo sapiens]
Length = 898
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 14 RVKKDDEEEDPLDQLISRSGCAASHFAVQECMAQHQDWRQCQP--QVQAFKDCMSEQQAR 71
R+ D + P Q +++ + H +Q+ Q Q ++ +P QVQ + Q
Sbjct: 329 RIPSTDTQVQPKLQKQAQTQTSPEHLVLQQKQVQPQLQQEAEPQKQVQPQVQPQAHSQGP 388
Query: 72 RQEELQRRQE 81
RQ +LQ+ E
Sbjct: 389 RQVQLQQEAE 398
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.124 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,666,507
Number of Sequences: 37866
Number of extensions: 142567
Number of successful extensions: 1473
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1103
Number of HSP's gapped (non-prelim): 281
length of query: 87
length of database: 18,247,518
effective HSP length: 59
effective length of query: 28
effective length of database: 16,013,424
effective search space: 448375872
effective search space used: 448375872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.