Guide to the Human Genome
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Name: CHCHD8 Sequence: fasta or formatted (87aa) NCBI GI: 46198304
Description:

coiled-coil-helix-coiled-coil-helix domain containing 8

Referenced in:

Coiled-Coil Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2          8           2
 C cysteine            4.6          4           1
 D aspartate           6.9          6           2
 E glutamate           9.2          8           3
 F phenylalanine       2.3          2           1
 G glycine             3.4          3           1
 H histidine           5.7          5           2
 I isoleucine          1.1          1           1
 K lysine              3.4          3           2
 L leucine             3.4          3           1
 M methionine          3.4          3           1
 N asparagine          0.0          0           0
 P proline             3.4          3           1
 Q glutamine          18.4         16           2
 R arginine            8.0          7           2
 S serine              6.9          6           1
 T threonine           3.4          3           1
 V valine              4.6          4           1
 W tryptophan          2.3          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   coiled-coil-helix-coiled-coil-helix domain containin... 
ZNF384                0.068   nuclear matrix transcription factor 4 isoform c [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform b [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform a [Hom...
ZNF384                0.068   nuclear matrix transcription factor 4 isoform d [Ho...
TCHH                  0.031   trichohyalin 
CCDC94                0.031   coiled-coil domain containing 94 
TBP                   0.025   TATA box binding protein 
LOC440243             0.025   PREDICTED: Putative golgin subfamily A member 6-lik...
POP1                  0.025   processing of precursor 1 
POP1                  0.025   processing of precursor 1 
POP1                  0.025   processing of precursor 1 
LOC283685             0.025   PREDICTED: golgi autoantigen, golgin subfamily a-li...
MLL2                  0.025   myeloid/lymphoid or mixed-lineage leukemia 2 
FOXP2                 0.019   forkhead box P2 isoform I 
FOXP2                 0.019   forkhead box P2 isoform III 
FOXP2                 0.019   forkhead box P2 isoform II 
LOC727832             0.019   golgi autoantigen, golgin subfamily a-like 
LOC283767             0.019   golgi autoantigen, golgin subfamily a-like 
LOC645202             0.019   PREDICTED: hypothetical protein LOC645202 
MED15                 0.019   mediator complex subunit 15 isoform a 
MED15                 0.019   mediator complex subunit 15 isoform b 
CSGALNACT1            0.019   chondroitin sulfate N-acetylgalactosaminyltransfera...
CSGALNACT1            0.019   chondroitin sulfate N-acetylgalactosaminyltransfera...
BAT2D1                0.019   HBxAg transactivated protein 2 
CIZ1                  0.012   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.012   CDKN1A interacting zinc finger protein 1 isoform 1 [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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