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Search of human proteins with 13129004
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo
sapiens]
(275 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens] 601 e-172
gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens] 601 e-172
gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens] 184 9e-47
gi|30089945 GIY-YIG domain containing 2 isoform 2 [Homo sapiens] 184 9e-47
gi|188219577 ring finger protein 19B isoform a [Homo sapiens] 40 0.002
gi|188219579 ring finger protein 19B isoform b [Homo sapiens] 40 0.002
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 40 0.002
gi|47132519 Ras association and pleckstrin homology domains 1 is... 39 0.005
gi|157041215 SPR1 protein [Homo sapiens] 38 0.008
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 37 0.019
gi|122937271 WAS protein homolog associated with actin, golgi me... 37 0.024
gi|46852392 chromobox homolog 6 [Homo sapiens] 37 0.024
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 37 0.024
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 36 0.042
gi|149944526 additional sex combs like 3 [Homo sapiens] 36 0.042
gi|55925576 insulin-like growth factor binding protein 2, 36kDa ... 35 0.054
gi|32483397 dopamine receptor D4 [Homo sapiens] 35 0.054
gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo ... 35 0.071
gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [... 35 0.071
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 35 0.071
gi|47078278 choline kinase alpha isoform b [Homo sapiens] 35 0.093
gi|47078276 choline kinase alpha isoform a [Homo sapiens] 35 0.093
gi|23592232 mediator complex subunit 19 [Homo sapiens] 35 0.093
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.093
gi|110431370 espin [Homo sapiens] 35 0.093
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 34 0.12
gi|150378503 leiomodin 2 (cardiac) [Homo sapiens] 34 0.12
gi|116256475 zinc finger protein 827 [Homo sapiens] 34 0.16
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 34 0.16
gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a... 34 0.16
>gi|62868208 GIY-YIG domain containing 1 isoform 1 [Homo sapiens]
Length = 275
Score = 601 bits (1550), Expect = e-172
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
Query: 61 GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA 120
GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA
Sbjct: 61 GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA 120
Query: 121 PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG 180
PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG
Sbjct: 121 PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG 180
Query: 181 DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK 240
DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK
Sbjct: 181 DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK 240
Query: 241 SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 275
SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
Sbjct: 241 SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 275
>gi|13129004 GIY-YIG domain containing 2 isoform 1 [Homo sapiens]
Length = 275
Score = 601 bits (1550), Expect = e-172
Identities = 275/275 (100%), Positives = 275/275 (100%)
Query: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
Query: 61 GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA 120
GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA
Sbjct: 61 GPWEMVLVVHGFPSSVAALRFEWAWQHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRA 120
Query: 121 PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG 180
PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG
Sbjct: 121 PPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG 180
Query: 181 DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK 240
DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK
Sbjct: 181 DPGACCSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEK 240
Query: 241 SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 275
SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET
Sbjct: 241 SLLWGDLIWLCQMDTEKEVEDSELEEAHWTDLLET 275
>gi|62868210 GIY-YIG domain containing 1 isoform 2 [Homo sapiens]
Length = 161
Score = 184 bits (466), Expect = 9e-47
Identities = 81/83 (97%), Positives = 83/83 (100%)
Query: 193 IQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 252
++DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ
Sbjct: 79 LRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 138
Query: 253 MDTEKEVEDSELEEAHWTDLLET 275
MDTEKEVEDSELEEAHWTDLLET
Sbjct: 139 MDTEKEVEDSELEEAHWTDLLET 161
Score = 172 bits (437), Expect = 2e-43
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
Query: 61 GPWEMVLVVHGFPSSVAALRFE 82
GPWEMVLVVHGFPSSVAALR E
Sbjct: 61 GPWEMVLVVHGFPSSVAALRDE 82
>gi|30089945 GIY-YIG domain containing 2 isoform 2 [Homo sapiens]
Length = 161
Score = 184 bits (466), Expect = 9e-47
Identities = 81/83 (97%), Positives = 83/83 (100%)
Query: 193 IQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 252
++DEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ
Sbjct: 79 LRDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQ 138
Query: 253 MDTEKEVEDSELEEAHWTDLLET 275
MDTEKEVEDSELEEAHWTDLLET
Sbjct: 139 MDTEKEVEDSELEEAHWTDLLET 161
Score = 172 bits (437), Expect = 2e-43
Identities = 81/82 (98%), Positives = 81/82 (98%)
Query: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR
Sbjct: 1 MGPAGVAARPGRFFGVYLLYCLNPRYRGRVYVGFTVNTARRVQQHNGGRKKGGAWRTSGR 60
Query: 61 GPWEMVLVVHGFPSSVAALRFE 82
GPWEMVLVVHGFPSSVAALR E
Sbjct: 61 GPWEMVLVVHGFPSSVAALRDE 82
>gi|188219577 ring finger protein 19B isoform a [Homo sapiens]
Length = 732
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 144 PPPPHVPLAFGPPP----------PQAPAPRRRAGPFDDAEPEPDQGDPGA---CCSLCA 190
PP P A GPPP +A A A P D E + G PGA C LC
Sbjct: 64 PPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCL 123
Query: 191 QTIQDEEGP--LCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSL 242
+ E P L CPH C CL E +P+ CP C + L
Sbjct: 124 VRLPPERAPRLLSCPHRSCR-----DCLRHYLRLEISESRVPI--SCPECSERL 170
>gi|188219579 ring finger protein 19B isoform b [Homo sapiens]
Length = 587
Score = 40.0 bits (92), Expect = 0.002
Identities = 36/114 (31%), Positives = 42/114 (36%), Gaps = 22/114 (19%)
Query: 144 PPPPHVPLAFGPPP----------PQAPAPRRRAGPFDDAEPEPDQGDPGA---CCSLCA 190
PP P A GPPP +A A A P D E + G PGA C LC
Sbjct: 64 PPAPAPAAAQGPPPEALPAEPAAEAEAEAAAAAAEPGFDDEEAAEGGGPGAEEVECPLCL 123
Query: 191 QTIQDEEGP--LCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSL 242
+ E P L CPH C CL E +P+ CP C + L
Sbjct: 124 VRLPPERAPRLLSCPHRSCR-----DCLRHYLRLEISESRVPI--SCPECSERL 170
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 5/72 (6%)
Query: 98 GPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPP 157
GP L F H+ VL ++L++ P RLP V P LR PP H+PLA P
Sbjct: 577 GPGLASAVDFKHHIEVLHYLLQSWPDPRLPRQSPDVAPYLRPK--RQPPLHLPLA---DP 631
Query: 158 PQAPAPRRRAGP 169
PR R GP
Sbjct: 632 EVVTRPRGRGGP 643
>gi|47132519 Ras association and pleckstrin homology domains 1
isoform 1 [Homo sapiens]
Length = 1250
Score = 38.9 bits (89), Expect = 0.005
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQ-GDPG 183
PPPP L F PPPP +P P P A P PD+ G PG
Sbjct: 918 PPPPESSLVF-PPPPPSPVPAPPPPPPPTASPTPDKSGSPG 957
Score = 30.4 bits (67), Expect = 1.8
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEP 175
PPPP P PPPP P P + A A P
Sbjct: 631 PPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAP 662
Score = 29.3 bits (64), Expect = 3.9
Identities = 12/21 (57%), Positives = 12/21 (57%)
Query: 143 LPPPPHVPLAFGPPPPQAPAP 163
LPPPP P PPPP P P
Sbjct: 628 LPPPPPPPPPPPPPPPPPPPP 648
>gi|157041215 SPR1 protein [Homo sapiens]
Length = 136
Score = 38.1 bits (87), Expect = 0.008
Identities = 25/63 (39%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 122 PWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEP--EPDQ 179
PW LP T W+ R D PP P P GP PP+ P P P D P EPD
Sbjct: 72 PWRDLPETGVWLPEPPRTDPPQPPRPDDPWPAGPQPPENPWP---PAPEVDNRPQEEPDL 128
Query: 180 GDP 182
P
Sbjct: 129 DPP 131
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 37.0 bits (84), Expect = 0.019
Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCCP 203
P P P PPP+AP+P RA PF P P G + + + GP+
Sbjct: 640 PMGPTCPTPAPVPPPEAPSP-FRAPPFHPPGPMPSVGSMPSAGPMPSAGPMPSAGPVPSA 698
Query: 204 HPGCLLRAHVICLAEEFLQEEPGQLLP 230
PG A+ + L+ L P +LLP
Sbjct: 699 RPGPPTTANHLGLSVPGLVSVPPRLLP 725
Score = 30.0 bits (66), Expect = 2.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 9/37 (24%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQG 180
PPPP +P A PPP++P P EPEP+ G
Sbjct: 977 PPPPTLPPAL--PPPESP-------PKVQPEPEPEPG 1004
Score = 29.6 bits (65), Expect = 3.0
Identities = 36/124 (29%), Positives = 47/124 (37%), Gaps = 19/124 (15%)
Query: 143 LPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEGPLCC 202
LPP P P + PPP AP A P A+ EP++ + GPL
Sbjct: 795 LPPLPPPPPSGATPPPIAPTGPPTASPPVPAKEEPEE-------------LPAAPGPLPP 841
Query: 203 PHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCPCCEKSLLWGDLIWLCQMDTEKEVEDS 262
P P + L L E P G P E+ L +I + D E+E E+
Sbjct: 842 PPPPPPPVPGPVTLPPPQLVPEG---TPGGGGPPALEEDL---TVININSSDEEEEEEEE 895
Query: 263 ELEE 266
E EE
Sbjct: 896 EEEE 899
>gi|122937271 WAS protein homolog associated with actin, golgi
membranes and microtubules [Homo sapiens]
Length = 809
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 139 QDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQDEEG 198
++L LPPPP P PPPP P P R A + G A D+
Sbjct: 634 EELSLPPPPPPPPPPPPPPPPPPPPLRALSSSSQAATHQNLG-------FRAPVKDDQPR 686
Query: 199 PLCCPHP 205
PL C P
Sbjct: 687 PLVCESP 693
>gi|46852392 chromobox homolog 6 [Homo sapiens]
Length = 412
Score = 36.6 bits (83), Expect = 0.024
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 127 PLTLRWVRPDLRQDLCLPP---------PPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEP 177
P W P++ DL LPP PP V A GP PP AP P AG A EP
Sbjct: 302 PSAPSWREPEVL-DLSLPPESAATSKRAPPEVTAAAGPAPPTAPEP---AG----ASSEP 353
Query: 178 DQGDPGACCSLCAQTI 193
+ GD S C+ +
Sbjct: 354 EAGDWRPEMSPCSNVV 369
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 36.6 bits (83), Expect = 0.024
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 133 VRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQT 192
V+P+ + LPPPP PPPQ PAP + +PE ++ +L +
Sbjct: 1048 VKPEKTEKKDLPPPP--------PPPQPPAPIQPQSVPPPIQPEAEKFPSTETATLAQKP 1099
Query: 193 IQDEEGPL 200
QD E PL
Sbjct: 1100 SQDTEKPL 1107
Score = 30.0 bits (66), Expect = 2.3
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 143 LPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGD 181
LPPPP + LA PPP A R GPF + D+ +
Sbjct: 406 LPPPPKL-LAQQHPPPDRQAVPGRPGPFPSKQQVADEDE 443
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 35.8 bits (81), Expect = 0.042
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 145 PPPHVPLAFGPPPPQAPAPRRRAGP-FDDAEPEPDQGDPGACCSLCAQTIQDEEGPLC 201
PP P A PPP AP+PRR P + EP P + C + + + E G C
Sbjct: 315 PPRPPPAARRPPPATAPSPRRAGSPPTREEEPRPRRSAARPQCPVQCECLLMETGCFC 372
>gi|149944526 additional sex combs like 3 [Homo sapiens]
Length = 2248
Score = 35.8 bits (81), Expect = 0.042
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 19/71 (26%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDP----------------GACCS 187
PPPP PLA PPPP P P +AE DQ P G C +
Sbjct: 2022 PPPPPPPLALPPPPPPPPP---LPPPLPNAEVPSDQKQPPVTMETTKRLSWPQSTGICSN 2078
Query: 188 LCAQTIQDEEG 198
+ ++ + EEG
Sbjct: 2079 IKSEPLSFEEG 2089
>gi|55925576 insulin-like growth factor binding protein 2, 36kDa
[Homo sapiens]
Length = 328
Score = 35.4 bits (80), Expect = 0.054
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 18/91 (19%)
Query: 142 CLPPPPHVPLAFGPPPPQAPAPRRRAG-----PFDDAEPEPDQGDPGACCSLCAQ----- 191
C P P A GPPP PA P + EP G CCS+CA+
Sbjct: 45 CPPCTPERLAACGPPPVAPPAAVAAVAGGARMPCAELVREPGCG----CCSVCARLEGEA 100
Query: 192 ----TIQDEEGPLCCPHPGCLLRAHVICLAE 218
T + +G C PHPG L + + E
Sbjct: 101 CGVYTPRCGQGLRCYPHPGSELPLQALVMGE 131
>gi|32483397 dopamine receptor D4 [Homo sapiens]
Length = 419
Score = 35.4 bits (80), Expect = 0.054
Identities = 25/62 (40%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 147 PHVPLAFGPPPPQAPAPRRRAGPF--DDAEPEP--DQGDPGACCSLCAQTI-QDEEGPLC 201
P P GPP P PAPR P D A P P +G G C+ A ++ QD GP C
Sbjct: 235 PRRPSGPGPPSPTPPAPRLPQDPCGPDCAPPAPGLPRGPCGPDCAPAAPSLPQDPCGPDC 294
Query: 202 CP 203
P
Sbjct: 295 AP 296
>gi|239748752 PREDICTED: hypothetical protein XP_002346787 [Homo
sapiens]
Length = 278
Score = 35.0 bits (79), Expect = 0.071
Identities = 46/147 (31%), Positives = 54/147 (36%), Gaps = 33/147 (22%)
Query: 90 ASRRLAHVG-PRLRGETAFAFHLRVLAHMLRAPPWARLPLTLR----WV-------RPDL 137
A RR+A G RL A V + PP ARLP R W P
Sbjct: 10 AWRRVARAGRARLYKALPIAGGAVVDVEVRPRPPPARLPRNGRRGPLWKGRGPAGRAPAA 69
Query: 138 RQDLCLPPPPHVPL-AFGPPPPQAPAPRR-RAGPFDDAEPEPDQGD-------------P 182
+ LP P P GP P ++P PR RA A PEP GD P
Sbjct: 70 SAETALPRPREPPEPGAGPSPKRSPPPRAPRASSL--AAPEPQVGDWTSREGRRGGPCLP 127
Query: 183 GACCSLCAQTIQDEEGP----LCCPHP 205
GA L + ++ GP C PHP
Sbjct: 128 GARRRLFSLSVSRSSGPPRARSCAPHP 154
>gi|111118994 brain-specific angiogenesis inhibitor 1 precursor [Homo
sapiens]
Length = 1584
Score = 35.0 bits (79), Expect = 0.071
Identities = 34/100 (34%), Positives = 44/100 (44%), Gaps = 20/100 (20%)
Query: 95 AHVGPRLRGETAFAFHLRV-----LAHMLRAPPWARLPLTLRWVRPDLRQDLCLPP---P 146
A + P+ + E ++ H+ L H+ AP A LP P RQ PP P
Sbjct: 1353 ATLRPKPKEEPKYSIHIDQMPQTRLIHLSTAPE-ASLPAR----SPPSRQ----PPSGGP 1403
Query: 147 PHVPLAFGPPPP--QAPAPRRRAGPFDDAEPEPDQ-GDPG 183
P P A PPPP P P++ P + EP P GDPG
Sbjct: 1404 PEAPPAQPPPPPPPPPPPPQQPLPPPPNLEPAPPSLGDPG 1443
Score = 29.6 bits (65), Expect = 3.0
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDD-AEPEPDQG 180
PPPP PL PPP PAP P + A P P G
Sbjct: 1419 PPPPQQPLP--PPPNLEPAPPSLGDPGEPAAHPGPSTG 1454
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 35.0 bits (79), Expect = 0.071
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 141 LCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDP 182
L +PPPP +P PP + P P+ P + E EP GDP
Sbjct: 123 LPIPPPPALP----PPASKEPPPQPPLAPLERPEIEPFSGDP 160
>gi|47078278 choline kinase alpha isoform b [Homo sapiens]
Length = 439
Score = 34.7 bits (78), Expect = 0.093
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 12/40 (30%)
Query: 141 LCLPPPPHVPLAF---GPPPPQAPAPRRRAGPFDDAEPEP 177
L LPPPP +PL PPPPQ PA D +PEP
Sbjct: 55 LALPPPPPLPLPLPLPQPPPPQPPA---------DEQPEP 85
>gi|47078276 choline kinase alpha isoform a [Homo sapiens]
Length = 457
Score = 34.7 bits (78), Expect = 0.093
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 12/40 (30%)
Query: 141 LCLPPPPHVPLAF---GPPPPQAPAPRRRAGPFDDAEPEP 177
L LPPPP +PL PPPPQ PA D +PEP
Sbjct: 55 LALPPPPPLPLPLPLPQPPPPQPPA---------DEQPEP 85
>gi|23592232 mediator complex subunit 19 [Homo sapiens]
Length = 194
Score = 34.7 bits (78), Expect = 0.093
Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 144 PPPPHVPLAFGP-PPPQAPAPRRRAGPFDDAEPEPDQGDPGA 184
PPPP L FGP PP P P GP P PGA
Sbjct: 14 PPPPPTALGFGPGKPPPPPPPPAGGGPGTAPPPTAATAPPGA 55
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 34.7 bits (78), Expect = 0.093
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 135 PDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQ 194
P ++ L L PP P GPP P P P GP + P P G PG+ S +
Sbjct: 847 PGHQEVLNLQGPPGPPGPRGPPGPSIPGPPGPRGPPGEGLPGP-PGPPGSFLSNSETFLS 905
Query: 195 DEEGPLCCPHP 205
GP P P
Sbjct: 906 GPPGPPGPPGP 916
Score = 33.9 bits (76), Expect = 0.16
Identities = 21/44 (47%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 141 LCLPPPPHVPLAFGPP-PPQAPAPRRRAGPFDDAEPEPDQGDPG 183
L +P PP P A GPP PP AP P AG E QG PG
Sbjct: 817 LTVPGPPGPPGAMGPPGPPGAPGPAGPAGLPGHQEVLNLQGPPG 860
Score = 30.4 bits (67), Expect = 1.8
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 10/73 (13%)
Query: 143 LPPPPHVPLAF---------GPP-PPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLCAQT 192
LP PP P +F GPP PP P P+ GP + +QG PG S +
Sbjct: 886 LPGPPGPPGSFLSNSETFLSGPPGPPGPPGPKGDQGPPGPRGHQGEQGLPGFSTSGSSSF 945
Query: 193 IQDEEGPLCCPHP 205
+ +GP P P
Sbjct: 946 GLNLQGPPGPPGP 958
>gi|110431370 espin [Homo sapiens]
Length = 854
Score = 34.7 bits (78), Expect = 0.093
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGP 169
PPPP +P A PPP P P AGP
Sbjct: 601 PPPPPLPEAASSPPPAPPLPLESAGP 626
Score = 32.0 bits (71), Expect = 0.60
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGP 169
PPPP PPPP PAP+ GP
Sbjct: 439 PPPPPPGTQLPPPPPGYPAPKPPVGP 464
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 34.3 bits (77), Expect = 0.12
Identities = 18/46 (39%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 144 PPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEP------EPDQGDPG 183
PPPP P PPPP PAP GP P P+ D G
Sbjct: 24 PPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALPPEAADEG 69
Score = 28.1 bits (61), Expect = 8.7
Identities = 19/40 (47%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
Query: 144 PPPPHV-PLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDP 182
PPPP P GP PPQ P PR A P + A D+G P
Sbjct: 37 PPPPPAPPPGPGPAPPQHP-PRAEALPPEAA----DEGGP 71
>gi|150378503 leiomodin 2 (cardiac) [Homo sapiens]
Length = 547
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 9/81 (11%)
Query: 119 RAPPWA--RLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPE 176
R PW+ +LP ++ VR + PPPP PPPP P P + P P
Sbjct: 394 RHSPWSSPKLPKKVQTVRSRPLSPVATPPPP-------PPPPPPPPPSSQRLPPPPPPPP 446
Query: 177 PDQGDPGACCSLCAQTIQDEE 197
P + A+ I+ +E
Sbjct: 447 PPLPEKKLITRNIAEVIKQQE 467
>gi|116256475 zinc finger protein 827 [Homo sapiens]
Length = 1077
Score = 33.9 bits (76), Expect = 0.16
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 7/57 (12%)
Query: 144 PPPPHVPLAFGPPPPQA------PAPRRRAGPFDDAEPEPDQGDPGACCSLCAQTIQ 194
PPPP P PPPPQ+ P P+ R ++ E + G P C +C I+
Sbjct: 329 PPPPPPPPPPPPPPPQSLELLLLPVPKGRVSKPSNSASEEESGKPFQ-CPICGLVIK 384
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 33.9 bits (76), Expect = 0.16
Identities = 29/84 (34%), Positives = 33/84 (39%), Gaps = 21/84 (25%)
Query: 86 QHPHASRRLAHVGPRLRGETAFAFHLRVLAHMLRAPPWARLPLTLRWVRPDLRQDLCLPP 145
QHPH P L G A AF +R P + L +W+ PD L PP
Sbjct: 368 QHPHQHH------PHLPG-AAGAF-----LRYMRQP--IKQELICKWIDPDELAGLPPPP 413
Query: 146 PPHVPLAFGPPPPQAPAPRRRAGP 169
PP PPPP P P A P
Sbjct: 414 PP-------PPPPPPPPPAGGAKP 430
Score = 28.1 bits (61), Expect = 8.7
Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 10/94 (10%)
Query: 130 LRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEPEPDQGDPGACCSLC 189
LR++R ++Q+L LA PPPP P P P A+P CS
Sbjct: 385 LRYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAGGAKP----------CSKT 434
Query: 190 AQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQE 223
T+ + + H G ++ +C E+ +E
Sbjct: 435 FGTMHELVNHVTVEHVGGPEQSSHVCFWEDCPRE 468
>gi|110225353 sprouty-related, EVH1 domain containing 3 isoform a
[Homo sapiens]
Length = 410
Score = 33.9 bits (76), Expect = 0.16
Identities = 34/145 (23%), Positives = 48/145 (33%), Gaps = 28/145 (19%)
Query: 122 PWARLPLTLRWVRPDLRQDLCLPPPPHVPLAFGPPPPQAPAPRRRAGPFDDAEP---EPD 178
P A +R+ + + L PP +P P AP R GP + P P+
Sbjct: 231 PLALSTCVVRFAKTGALRGAALGPPAALPAPLTEAAPPAPPARPPPGPGPSSAPAKASPE 290
Query: 179 QGDPGAC--CSLCAQTIQDEEGPLCCPHPGCLLRAHVICLAEEFLQEEPGQLLPLEGQCP 236
+ C C + D G C P +PG+LL C
Sbjct: 291 AEEAARCVHCRALFRRRADGRGGRCAEAP------------------DPGRLLVRRLSCL 332
Query: 237 CCEKSLLWGDLIWLCQMDTEKEVED 261
C +SLL+ C D E + D
Sbjct: 333 WCAESLLYH-----CLSDAEGDFSD 352
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.495
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,509,572
Number of Sequences: 37866
Number of extensions: 1004950
Number of successful extensions: 8759
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 262
Number of HSP's that attempted gapping in prelim test: 6566
Number of HSP's gapped (non-prelim): 1847
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.