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Search of human proteins with 10880985
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10880985 interferon, alpha 17 [Homo sapiens]
(189 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10880985 interferon, alpha 17 [Homo sapiens] 374 e-104
gi|10835103 interferon, alpha 4 [Homo sapiens] 358 2e-99
gi|4504589 interferon, alpha 10 [Homo sapiens] 357 3e-99
gi|71143135 interferon, alpha 7 [Homo sapiens] 344 3e-95
gi|169791013 interferon, alpha 21 [Homo sapiens] 340 4e-94
gi|4504593 interferon, alpha 16 [Homo sapiens] 327 5e-90
gi|4504597 interferon, alpha 5 [Homo sapiens] 320 4e-88
gi|170763491 interferon, alpha 14 [Homo sapiens] 317 3e-87
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 302 1e-82
gi|13128950 interferon, alpha 1 [Homo sapiens] 300 4e-82
gi|11067751 interferon, alpha 2 [Homo sapiens] 300 4e-82
gi|11128015 interferon, alpha 6 [Homo sapiens] 300 5e-82
gi|42476083 interferon, alpha 8 [Homo sapiens] 295 1e-80
gi|4504605 interferon, omega 1 [Homo sapiens] 212 2e-55
gi|28882045 interferon, epsilon [Homo sapiens] 107 6e-24
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 100 1e-21
gi|112789564 interferon kappa precursor [Homo sapiens] 86 2e-17
gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens] 30 1.2
gi|4557873 uroporphyrinogen III synthase [Homo sapiens] 29 2.1
gi|5032281 dystrophin Dp427c isoform [Homo sapiens] 28 3.6
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens] 28 3.6
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens] 28 3.6
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens] 28 3.6
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens] 28 3.6
gi|5032285 dystrophin Dp427l isoform [Homo sapiens] 28 3.6
gi|5032283 dystrophin Dp427m isoform [Homo sapiens] 28 3.6
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens] 28 6.1
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens] 28 6.1
gi|34577120 mitochondrial translational release factor 1 [Homo s... 28 6.1
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 374 bits (961), Expect = e-104
Identities = 189/189 (100%), Positives = 189/189 (100%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE
Sbjct: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKILRRKD 189
LQKILRRKD
Sbjct: 181 LQKILRRKD 189
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 358 bits (919), Expect = 2e-99
Identities = 181/189 (95%), Positives = 185/189 (97%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
P+EEFDG+QFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN+LE
Sbjct: 61 FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVG+EETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKILRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 357 bits (917), Expect = 3e-99
Identities = 180/189 (95%), Positives = 184/189 (97%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRISPFSCLKDRHDF
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
+PQEEFDGNQFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN+LE
Sbjct: 61 IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVG+EETPLMNEDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKILRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 344 bits (882), Expect = 3e-95
Identities = 174/189 (92%), Positives = 180/189 (95%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILLAQMGRISPFSCLKDRH+F
Sbjct: 1 MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
P+EEFDG+QFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN+LE
Sbjct: 61 FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVG+EETPLMNED ILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LQKILRRKD 189
L+K LRRKD
Sbjct: 181 LKKGLRRKD 189
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 340 bits (872), Expect = 4e-94
Identities = 172/189 (91%), Positives = 178/189 (94%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK QAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLN+LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVG+EETPLMN DSILAV+KYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180
Query: 181 LQKILRRKD 189
Q+ LRRK+
Sbjct: 181 FQERLRRKE 189
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 327 bits (837), Expect = 5e-90
Identities = 165/189 (87%), Positives = 174/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRIS FSCLKDR+DFG
Sbjct: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQE FDGNQFQK QAIS HEMIQQTFNLFST+DSSAAW+++LL+KF EL+QQLN+LE
Sbjct: 61 FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACV QEVG+EE LMNEDSILAVRKYFQRITLYL KKYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180
Query: 181 LQKILRRKD 189
LQK LRRKD
Sbjct: 181 LQKGLRRKD 189
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 320 bits (821), Expect = 4e-88
Identities = 156/189 (82%), Positives = 174/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++AQMGRISPFSCLKDRHDFG
Sbjct: 1 MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK QAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLN+LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
AC++QEVG+E+TPLMN DSIL VRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180
Query: 181 LQKILRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 317 bits (813), Expect = 3e-87
Identities = 157/189 (83%), Positives = 175/189 (92%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+AQM RISPFSCLKDRHDF
Sbjct: 1 MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK QAISVLHEM+QQTFNLFST++SSAAW+++LLEKF EL+QQ+N+LE
Sbjct: 61 FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQEVG+EETPLMNEDSILAV+KYFQRITLYL EKKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180
Query: 181 LQKILRRKD 189
LQK LRRKD
Sbjct: 181 LQKRLRRKD 189
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 302 bits (773), Expect = 1e-82
Identities = 150/189 (79%), Positives = 168/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 2 MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLN+LE
Sbjct: 62 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACV+QE + ETPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181
Query: 181 LQKILRRKD 189
LQ+ LRRK+
Sbjct: 182 LQERLRRKE 190
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 300 bits (769), Expect = 4e-82
Identities = 149/189 (78%), Positives = 167/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MA F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDFG
Sbjct: 1 MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLN+LE
Sbjct: 61 FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACV+QE + ETPLMN DSILAV+KYF+RITLYLTEKKYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180
Query: 181 LQKILRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 300 bits (769), Expect = 4e-82
Identities = 152/189 (80%), Positives = 169/189 (89%), Gaps = 1/189 (0%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LLAQM RIS FSCLKDRHDFG
Sbjct: 1 MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEF GNQFQK + I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLN+LE
Sbjct: 61 FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACVIQ VG+ ETPLM EDSILAVRKYFQRITLYL EKKYSPCAWEVVRAEIMRS S STN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179
Query: 181 LQKILRRKD 189
LQ+ LR K+
Sbjct: 180 LQESLRSKE 188
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 300 bits (768), Expect = 5e-82
Identities = 151/189 (79%), Positives = 168/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LLAQM RIS FSCLKDRHDF
Sbjct: 1 MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFDGNQFQK +AISVLHE+IQQTFNLFST+DSS AW++ LL+K TELYQQLN+LE
Sbjct: 61 FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
ACV+QEV + TPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180
Query: 181 LQKILRRKD 189
LQ+ LRRK+
Sbjct: 181 LQERLRRKE 189
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 295 bits (756), Expect = 1e-80
Identities = 151/189 (79%), Positives = 168/189 (88%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL+F LL+A++VLSYKS SLGCDLPQTHSLGNRRALILLAQM RISPFSCLKDRHDF
Sbjct: 1 MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQEEFD QFQK QAISVLHEMIQQTFNLFST+DSSAA +++LL++F EL QQLN+LE
Sbjct: 61 FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
+CV+QEVG+ E+PLM EDSILAVRKYFQRITLYLTEKKYS CAWEVVRAEIMRS S S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
Query: 181 LQKILRRKD 189
LQK L+ K+
Sbjct: 181 LQKRLKSKE 189
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 212 bits (539), Expect = 2e-55
Identities = 109/189 (57%), Positives = 133/189 (70%)
Query: 1 MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60
MAL F LL A+++ SY + SLGCDLPQ H L +R L+LL QM RISPF CLKDR DF
Sbjct: 1 MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60
Query: 61 LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120
PQE G+Q QK +SVLHEM+QQ F+LF TE SSAAW +LL++ T L+QQL +LE
Sbjct: 61 FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120
Query: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180
C++Q VG E+ L +R+YFQ I +YL EKKYS CAWEVVR EIM+SL STN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180
Query: 181 LQKILRRKD 189
+Q+ LR KD
Sbjct: 181 MQERLRSKD 189
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 107 bits (267), Expect = 6e-24
Identities = 60/155 (38%), Positives = 90/155 (58%)
Query: 34 NRRALILLAQMGRISPFSCLKDRHDFGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFST 93
N+ +L LL ++ +S CL R +F LPQ+ Q+QK +++LHEM+QQ F+LF
Sbjct: 35 NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94
Query: 94 EDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYFQRITLY 153
S WE++ EKF +L+QQL LEA + E L +++ L V+ YF+RI Y
Sbjct: 95 NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154
Query: 154 LTEKKYSPCAWEVVRAEIMRSLSFSTNLQKILRRK 188
L + YS CAW +V+ EI R L F +L + L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 99.8 bits (247), Expect = 1e-21
Identities = 49/135 (36%), Positives = 78/135 (57%)
Query: 52 CLKDRHDFGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
CLKDR +F +P+E QFQK A ++EM+Q F +F + SS W ++++E
Sbjct: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
Query: 112 LYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
+Y Q+N+L+ + +++ E+ S L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
Query: 172 MRSLSFSTNLQKILR 186
+R+ F L LR
Sbjct: 172 LRNFYFINRLTGYLR 186
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 85.5 bits (210), Expect = 2e-17
Identities = 66/203 (32%), Positives = 92/203 (45%), Gaps = 24/203 (11%)
Query: 3 LSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRA----LILLAQMGRISPFSCLKDRHD 58
L +LM + + SL C+L H RR L L+ M P CL++
Sbjct: 12 LWLEILMGIFIAG---TLSLDCNLLNVHL---RRVTWQNLRHLSSMSNSFPVECLRENIA 65
Query: 59 FGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNN 118
F LPQE Q K +EM Q FN+FS + + W++ L++ L QQ
Sbjct: 66 FELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEY 124
Query: 119 LEACVIQEVGM-EETPLMNED------------SILAVRKYFQRITLYLTEKKYSPCAWE 165
L C+ ++ E+ M E+ S L +R+YF RI +L EKKYS CAWE
Sbjct: 125 LNQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWE 184
Query: 166 VVRAEIMRSLSFSTNLQKILRRK 188
+VR EI R L + + RRK
Sbjct: 185 IVRVEIRRCLYYFYKFTALFRRK 207
>gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens]
Length = 163
Score = 30.0 bits (66), Expect = 1.2
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 73 KTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVGMEET 132
K Q ++L + ++ + +DSS A+E++ L S +L + + ++ V+ +V + T
Sbjct: 81 KGQTGAILQDTVESLSKTWCAQDSSLAYERAFL-AVSVKLLEYMAHIAPEVVGQVAIPMT 139
Query: 133 PLMNEDSILAVRKYFQ 148
++N + A+R++ Q
Sbjct: 140 GMINGNQ--AIREFIQ 153
>gi|4557873 uroporphyrinogen III synthase [Homo sapiens]
Length = 265
Score = 29.3 bits (64), Expect = 2.1
Identities = 14/67 (20%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 64 EEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACV 123
E++ G F +A+ ++Q + + WE+SL EK++ + + N A +
Sbjct: 54 EDYGGLIFTSPRAVEAAELCLEQN-------NKTEVWERSLKEKWNAKSVYVVGNATASL 106
Query: 124 IQEVGME 130
+ ++G++
Sbjct: 107 VSKIGLD 113
>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
Length = 3677
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 1775 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1822
>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
Length = 2341
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 439 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 486
>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
Length = 2344
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 442 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 489
>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
Length = 3562
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707
>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
Length = 3681
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 1779 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1826
>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
Length = 3562
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707
>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
Length = 3685
Score = 28.5 bits (62), Expect = 3.6
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 105 LEKFSTELYQQLNNLEACVIQEVGMEETPL---MNEDSILAVRKYFQR 149
LE+F++++ + L LEA + Q V ++E MNED+ V++ QR
Sbjct: 1783 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1830
>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
Length = 561
Score = 27.7 bits (60), Expect = 6.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 76 AISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTEL 112
A+S+LHE+ + ED S A +Q + EK S L
Sbjct: 62 AVSILHELCVDSLPTLDDEDLSVATKQCVPEKVSEPL 98
>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
Length = 416
Score = 27.7 bits (60), Expect = 6.1
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 110 TELYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYF 147
T +YQ LN C+ E+G+ + + +++S+ + R+YF
Sbjct: 225 TGIYQVLNGSRLCIKAEMGI-QLIVQDKESVFSPRRYF 261
>gi|34577120 mitochondrial translational release factor 1 [Homo
sapiens]
Length = 445
Score = 27.7 bits (60), Expect = 6.1
Identities = 12/53 (22%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 79 VLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLEACVIQEVGMEE 131
+LH + + + +D+ W+ L+K+ L ++ LE C +Q + + E
Sbjct: 49 ILHLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQC-LQHIPVNE 100
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,357,978
Number of Sequences: 37866
Number of extensions: 248746
Number of successful extensions: 530
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 509
Number of HSP's gapped (non-prelim): 29
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.