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Search of human proteins with 10880983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|10880983 gephyrin isoform 1 [Homo sapiens]
(769 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|10880983 gephyrin isoform 1 [Homo sapiens] 1533 0.0
gi|66932975 gephyrin isoform 2 [Homo sapiens] 1445 0.0
gi|190341107 N-acetyltransferase 12 [Homo sapiens] 38 0.041
gi|195947369 junction-mediating and regulatory protein [Homo sap... 37 0.069
gi|158534059 formin binding protein 4 [Homo sapiens] 37 0.090
gi|27501458 CTF18, chromosome transmission fidelity factor 18 ho... 37 0.090
gi|182765442 homeobox A10 isoform a [Homo sapiens] 36 0.12
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 36 0.12
gi|15529980 leucine rich repeat containing 46 [Homo sapiens] 36 0.12
gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens] 35 0.20
gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens] 35 0.20
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 35 0.34
gi|239743293 PREDICTED: mucin 12 [Homo sapiens] 35 0.34
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 35 0.34
gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo ... 35 0.34
gi|31581524 cordon-bleu homolog [Homo sapiens] 35 0.34
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 34 0.45
gi|148612879 polyhomeotic like 3 [Homo sapiens] 34 0.45
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 34 0.45
gi|12232415 hypothetical protein LOC64762 [Homo sapiens] 34 0.59
gi|21361472 neural precursor cell expressed, developmentally dow... 34 0.59
gi|222352094 neural precursor cell expressed, developmentally do... 34 0.59
gi|222352092 neural precursor cell expressed, developmentally do... 34 0.59
gi|222352090 neural precursor cell expressed, developmentally do... 34 0.59
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.59
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 34 0.59
gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens] 34 0.59
gi|239508973 PREDICTED: similar to Mucin-3A [Homo sapiens] 34 0.59
gi|62460633 RNA-binding motif protein 16 [Homo sapiens] 34 0.59
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.59
>gi|10880983 gephyrin isoform 1 [Homo sapiens]
Length = 769
Score = 1533 bits (3969), Expect = 0.0
Identities = 769/769 (100%), Positives = 769/769 (100%)
Query: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
Query: 241 AAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTP 300
AAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTP
Sbjct: 241 AAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTP 300
Query: 301 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD 360
SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD
Sbjct: 301 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD 360
Query: 361 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR 420
KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR
Sbjct: 361 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR 420
Query: 421 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI 480
FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI
Sbjct: 421 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI 480
Query: 481 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG 540
LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG
Sbjct: 481 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG 540
Query: 541 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV 600
NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV
Sbjct: 541 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV 600
Query: 601 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN 660
IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN
Sbjct: 601 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN 660
Query: 661 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP 720
PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP
Sbjct: 661 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP 720
Query: 721 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 769
WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
Sbjct: 721 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 769
>gi|66932975 gephyrin isoform 2 [Homo sapiens]
Length = 736
Score = 1445 bits (3741), Expect = 0.0
Identities = 736/769 (95%), Positives = 736/769 (95%), Gaps = 33/769 (4%)
Query: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP
Sbjct: 1 MATEGMILTNHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP 60
Query: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL
Sbjct: 61 DEIEEIKETLIDWCDEKELNLILTTGGTGFAPRDVTPEATKEVIEREAPGMALAMLMGSL 120
Query: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH
Sbjct: 121 NVTPLGMLSRPVCGIRGKTLIINLPGSKKGSQECFQFILPALPHAIDLLRDAIVKVKEVH 180
Query: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI
Sbjct: 181 DELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAI 240
Query: 241 AAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTP 300
AAK IPDSIISRGVQVLPRDTASLSTTP
Sbjct: 241 AAK---------------------------------IPDSIISRGVQVLPRDTASLSTTP 267
Query: 301 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD 360
SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD
Sbjct: 268 SESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMD 327
Query: 361 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR 420
KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR
Sbjct: 328 KAFITVLEMTPVLGTEIINYRDGMGRVLAQDVYAKDNLPPFPASVKDGYAVRAADGPGDR 387
Query: 421 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI 480
FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI
Sbjct: 388 FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQVEDTELIRESDDGTEELEVRI 447
Query: 481 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG 540
LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG
Sbjct: 448 LVQARPGQDIRPIGHDIKRGECVLAKGTHMGPSEIGLLATVGVTEVEVNKFPVVAVMSTG 507
Query: 541 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV 600
NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV
Sbjct: 508 NELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADV 567
Query: 601 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN 660
IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN
Sbjct: 568 IITSGGVSMGEKDYLKQVLDIDLHAQIHFGRVFMKPGLPTTFATLDIDGVRKIIFALPGN 627
Query: 661 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP 720
PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP
Sbjct: 628 PVSAVVTCNLFVVPALRKMQGILDPRPTIIKARLSCDVKLDPRPEYHRCILTWHHQEPLP 687
Query: 721 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 769
WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL
Sbjct: 688 WAQSTGNQMSSRLMSMRSANGLLMLPPKTEQYVELHKGEVVDVMVIGRL 736
>gi|190341107 N-acetyltransferase 12 [Homo sapiens]
Length = 362
Score = 37.7 bits (86), Expect = 0.041
Identities = 39/147 (26%), Positives = 60/147 (40%), Gaps = 18/147 (12%)
Query: 183 LEDLPSPPPPLSPPPTTSPHKQTEDK-------GVQC--EEEEEEKKDSGVASTEDSSSS 233
+ ++P P L PPP E + + C E+EE++++ G S +
Sbjct: 1 MAEVPPGPSSLLPPPAPPAPAAVEPRCPFPAGAALACCSEDEEDDEEHEGGGSRSPAGGE 60
Query: 234 HITAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDT 293
+A +AAK HP P +Q + GLI S R S+ S+ + V +
Sbjct: 61 ---SATVAAKGHPCLRCPQPPQE--QQQLNGLI--SPELRHLRAAASLKSKVLSVA--EV 111
Query: 294 ASLSTTPSESPRAQATSRLSTASCPTP 320
A+ + TP PRA AT S P
Sbjct: 112 AATTATPDGGPRATATKGAGVHSGERP 138
>gi|195947369 junction-mediating and regulatory protein [Homo
sapiens]
Length = 988
Score = 37.0 bits (84), Expect = 0.069
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 161 ALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKK 220
+LP + L V + + L P PPPP PPP P +D G + E++ +K
Sbjct: 785 SLPLLNNNLEPCSVTINPLPSPLPPTPPPPPPPPPPPPPPPLPVAKDSGPETLEKDLPRK 844
Query: 221 DSG---VASTEDSSSSHI--TAAAIAAKK 244
+ + + + S+H+ ++ ++A+K
Sbjct: 845 EGNEKRIPKSASAPSAHLFDSSQLVSARK 873
>gi|158534059 formin binding protein 4 [Homo sapiens]
Length = 1017
Score = 36.6 bits (83), Expect = 0.090
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQ-CEEEEEEKKDSGVASTEDSS 231
P PPPP SPPP P ED +Q E E+E ++ TE+ +
Sbjct: 714 PPPPPPESPPPPPPPPPPAEDGEIQEVEMEDEGSEEPPAPGTEEDT 759
>gi|27501458 CTF18, chromosome transmission fidelity factor 18
homolog [Homo sapiens]
Length = 975
Score = 36.6 bits (83), Expect = 0.090
Identities = 37/140 (26%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 161 ALPHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKK 220
+LPHA + R + VK ++ E++ PPPP S P +P ED E
Sbjct: 92 SLPHAPRIKRPRLQVVKRLNFRSEEMEEPPPPDSSPTDITPPPSPEDLA--------ELW 143
Query: 221 DSGVASTEDSSSSHITAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDS 280
GV +E ++ +T A+ AA ++P P P L +Y H ++ E +
Sbjct: 144 GHGV--SEAAADVGLTRASPAA-RNPVLRRP-----------PILEDYVHVTSTEGVRAY 189
Query: 281 IISRGVQVLPRDTASLSTTP 300
++ R + P SL P
Sbjct: 190 LVLRADPMAPGVQGSLLHVP 209
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 36.2 bits (82), Expect = 0.12
Identities = 32/111 (28%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 163 PHAIDLLRDAIVKVKEVHDELEDLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS 222
P IDL DA + E D P PPP PPP P Q + C + K++S
Sbjct: 112 PSPIDLWLDA---PRSCRMEPPDGPPPPPQQQPPPPPQP-PQPAPQATSCSFAQNIKEES 167
Query: 223 GVASTEDSSSSHITAAAIAAKKHPFYTSP----AVVMAHGEQPIPGLINYS 269
DS+ +A AA+ PF P + P+PG S
Sbjct: 168 SYC-LYDSADKCPKVSATAAELAPFPRGPPPDGCALGTSSGVPVPGYFRLS 217
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.2 bits (82), Expect = 0.12
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 283 SRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDI 342
S+G P ++S ++P P+++ T+R + S P PK +SR + R+S S+ ++
Sbjct: 1642 SKGRGPSPEGSSSTESSPEHPPKSR-TARRGSRSSPEPKTKSRTPPRR---RSSRSSPEL 1697
Query: 343 TKVARRHRMS 352
T+ AR R S
Sbjct: 1698 TRKARLSRRS 1707
Score = 33.1 bits (74), Expect = 1.00
Identities = 36/166 (21%), Positives = 66/166 (39%), Gaps = 29/166 (17%)
Query: 180 HDELEDLPSPPPPLS----PPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHI 235
H+ + +P+P P S PP +T + + +Q +E S +S+ SSSS
Sbjct: 2490 HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSS 2549
Query: 236 TAAA--------------------IAAKKHPFYT-SPAVVMAHGEQPIPGLINYSHHSTD 274
++++ +A K+ P T +P + G P P S+
Sbjct: 2550 SSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSS 2609
Query: 275 ERIPDSIISRGVQVLPRDTASLSTTPSESPRAQATSRLSTASCPTP 320
S S ++S S++ S S + ++S S++S P+P
Sbjct: 2610 SSSSSSSSSSS----SSSSSSSSSSSSSSSSSSSSSSSSSSSSPSP 2651
Score = 32.7 bits (73), Expect = 1.3
Identities = 39/162 (24%), Positives = 57/162 (35%), Gaps = 22/162 (13%)
Query: 192 PLSPPPTTS------PHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKH 245
P S P TTS P T+ E+++++KK+ S T
Sbjct: 309 PFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTG------PE 362
Query: 246 PFYTSPAVVMAHGEQPIP----GLINYSHHSTDERIP--DSIISRGVQVLPRDTASLSTT 299
P +P + HG P P L + E P D + + LP+ ++S S+
Sbjct: 363 PPAPTPLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSP 422
Query: 300 PSESP----RAQATSRLSTASCPTPKVQSRCSSKENILRASH 337
PS P R ++S S P P SS SH
Sbjct: 423 PSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSH 464
Score = 32.7 bits (73), Expect = 1.3
Identities = 44/190 (23%), Positives = 67/190 (35%), Gaps = 37/190 (19%)
Query: 183 LEDLPSPPP----------PLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSS 232
L+ +PSP P P P P + + S +S+ SSS
Sbjct: 2576 LKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2635
Query: 233 SHITAAAIAAKKHPFYTSPAVVM----AHGEQPIPGLINYSHHSTDERIP-DSIISRGVQ 287
S ++++ ++ P P A ++P PG S R P DS+
Sbjct: 2636 SSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPG----ERRSRSPRKPIDSL------ 2685
Query: 288 VLPRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASH-SAVDITKVA 346
RD+ SLS +P E R P+P+ Q SS+ R + +
Sbjct: 2686 ---RDSRSLSYSPVERRRPSPQ--------PSPRDQQSSSSERGSRRGQRGDSRSPSHKR 2734
Query: 347 RRHRMSPFPL 356
RR SP P+
Sbjct: 2735 RRETPSPRPM 2744
Score = 30.8 bits (68), Expect = 5.0
Identities = 30/139 (21%), Positives = 47/139 (33%), Gaps = 1/139 (0%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPF 247
S P P +P P P + + E S +S E S + P
Sbjct: 1620 SSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPK 1679
Query: 248 YTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLS-TTPSESPRA 306
S + P L + S R S + PR S S ++P + ++
Sbjct: 1680 TKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSSPEPAEKS 1739
Query: 307 QATSRLSTASCPTPKVQSR 325
+++ R +AS P K SR
Sbjct: 1740 RSSRRRRSASSPRTKTTSR 1758
>gi|15529980 leucine rich repeat containing 46 [Homo sapiens]
Length = 321
Score = 36.2 bits (82), Expect = 0.12
Identities = 47/195 (24%), Positives = 82/195 (42%), Gaps = 32/195 (16%)
Query: 140 LIINLPGSKKGSQECF-QFILPALPHAIDLLRDAIVKVKEVHDELEDLPSPP--PPLSPP 196
LI+NL G+ +Q+ + + + ALP +DL +V+ + + DE ++ S P LS P
Sbjct: 135 LILNLSGNSCTNQDGYRELVTEALPLLLDLDGQPVVE-RWISDEEDEASSDEEFPELSGP 193
Query: 197 PTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPFYT------- 249
+ ++G E E+E + E + +T + + P T
Sbjct: 194 FCS-------ERGFLKELEQELSRHR-----EHRQQTALTEHLLRMEMQPTLTDLPLLPG 241
Query: 250 -------SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQ--VLPRDTASLSTTP 300
SP+ A GE+ +P ++ S+ + P S+I RG Q R A +T P
Sbjct: 242 VPMAGDSSPSATPAQGEETVPEAVSSPQASSPTKKPCSLIPRGHQSSFWGRKGARAATAP 301
Query: 301 SESPRAQATSRLSTA 315
S ++ +TA
Sbjct: 302 KASVAEAPSTTKTTA 316
>gi|125858485 hypothetical protein LOC80209 isoform 2 [Homo sapiens]
Length = 922
Score = 35.4 bits (80), Expect = 0.20
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSH------ITAAAIAA 242
PPPP +P P + ++ + + + S + S S+ S TA+ + A
Sbjct: 210 PPPPYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKA 269
Query: 243 KKHPFYTSPAVV----MAHGEQPI-PGLINYSHHSTDERIPDSIISRGVQVLPRDTASLS 297
HP ++ A V + + P+ PG ++ + H+ IP+ + R
Sbjct: 270 INHPSASAAATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNPTVIR------------- 316
Query: 298 TTPSESPRAQATSRLSTASCPTPKVQS 324
TPS P A TS ST + P P + S
Sbjct: 317 -TPS-LPTAPVTSIHSTTTTPVPSIFS 341
>gi|125656155 hypothetical protein LOC80209 isoform 1 [Homo sapiens]
Length = 944
Score = 35.4 bits (80), Expect = 0.20
Identities = 36/147 (24%), Positives = 60/147 (40%), Gaps = 26/147 (17%)
Query: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSH------ITAAAIAA 242
PPPP +P P + ++ + + + S + S S+ S TA+ + A
Sbjct: 232 PPPPYTPNPVGTENEDLSNPSKPIQNQTFSTPASQLFSPHGSNPSTPAATPVPTASPVKA 291
Query: 243 KKHPFYTSPAVV----MAHGEQPI-PGLINYSHHSTDERIPDSIISRGVQVLPRDTASLS 297
HP ++ A V + + P+ PG ++ + H+ IP+ + R
Sbjct: 292 INHPSASAAATVSGMNLLNTVLPVFPGQVSSAVHTPQPSIPNPTVIR------------- 338
Query: 298 TTPSESPRAQATSRLSTASCPTPKVQS 324
TPS P A TS ST + P P + S
Sbjct: 339 -TPS-LPTAPVTSIHSTTTTPVPSIFS 363
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 34.7 bits (78), Expect = 0.34
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 291 RDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHR 350
R A + + SPRA+A +S S P P SR S+ L A S D K + R+R
Sbjct: 120 RAGARMRSAAPASPRARAARAISNQSSPPPPPPSRARSRSLRLSAPGSRHDAEKASERNR 179
Query: 351 M 351
+
Sbjct: 180 L 180
>gi|239743293 PREDICTED: mucin 12 [Homo sapiens]
Length = 5478
Score = 34.7 bits (78), Expect = 0.34
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS----GVASTEDSSSSHITAAAIAAK 243
SP LSP +TSP Q E Q S A E+S++ H + +
Sbjct: 1115 SPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTT 1174
Query: 244 KHPFYT-----SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISR------GVQVLPRD 292
P + S + H G S HST +S SR + LP
Sbjct: 1175 HFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGS 1234
Query: 293 T-----ASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV 340
T + STT SPR+ T+ LS AS + V ++ + ++HS V
Sbjct: 1235 TTTPGLSEASTTFYSSPRSPTTT-LSPASMTSLGVGEESTTSRSQPGSTHSTV 1286
Score = 34.7 bits (78), Expect = 0.34
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS----GVASTEDSSSSHITAAAIAAK 243
SP LSP +TSP Q E Q S A E+S++ H + +
Sbjct: 2198 SPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTT 2257
Query: 244 KHPFYT-----SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISR------GVQVLPRD 292
P + S + H G S HST +S SR + LP
Sbjct: 2258 HFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGS 2317
Query: 293 T-----ASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV 340
T + STT SPR+ T+ LS AS + V ++ + ++HS V
Sbjct: 2318 TTTPGLSEASTTFYSSPRSPTTT-LSPASMTSLGVGEESTTSRSQPGSTHSTV 2369
Score = 34.7 bits (78), Expect = 0.34
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS----GVASTEDSSSSHITAAAIAAK 243
SP LSP +TSP Q E Q S A E+S++ H + +
Sbjct: 3755 SPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTT 3814
Query: 244 KHPFYT-----SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISR------GVQVLPRD 292
P + S + H G S HST +S SR + LP
Sbjct: 3815 HFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGS 3874
Query: 293 T-----ASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV 340
T + STT SPR+ T+ LS AS + V ++ + ++HS V
Sbjct: 3875 TTTPGLSEASTTFYSSPRSPTTT-LSPASMTSLGVGEESTTSRSQPGSTHSTV 3926
Score = 33.9 bits (76), Expect = 0.59
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS----GVASTEDSSSSHITAAAIAAK 243
SP LSP +TSP Q E Q S A E+S++ H + +
Sbjct: 2672 SPRTTLSPASSTSPGLQGESTTFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTT 2731
Query: 244 KHPFYT-----SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISR------GVQVLPRD 292
P + S + H G S HST +S SR + LP
Sbjct: 2732 HFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGS 2791
Query: 293 T-----ASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV 340
T + STT SPR+ T+ LS AS + V ++ + ++HS V
Sbjct: 2792 TTTPGLSEASTTFYSSPRSPTTT-LSPASMTSLGVGEESTTSRSQPGSTHSTV 2843
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 34.7 bits (78), Expect = 0.34
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 291 RDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHR 350
R A + + SPRA+A +S S P P SR S+ L A S D K + R+R
Sbjct: 120 RAGARMRSAAPASPRARAARAISNQSSPPPPPPSRARSRSLRLSAPGSRHDAEKASERNR 179
Query: 351 M 351
+
Sbjct: 180 L 180
>gi|239508976 PREDICTED: mucin 12, cell surface associated [Homo
sapiens]
Length = 2036
Score = 34.7 bits (78), Expect = 0.34
Identities = 45/173 (26%), Positives = 64/173 (36%), Gaps = 21/173 (12%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDS----GVASTEDSSSSHITAAAIAAK 243
SP LSP +TSP Q E Q S A E+S++ H + +
Sbjct: 602 SPRTTLSPASSTSPGLQGESTAFQTHPASTHTTPSPPSTATAPVEESTTYHRSPGSTPTT 661
Query: 244 KHPFYT-----SPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISR------GVQVLPRD 292
P + S + H G S HST +S SR + LP
Sbjct: 662 HFPASSTTSGHSEKSTIFHSSPDASGTTPSSAHSTTSGRGESTTSRISPGSTEITTLPGS 721
Query: 293 T-----ASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAV 340
T + STT SPR+ T+ LS AS + V ++ + ++HS V
Sbjct: 722 TTTPGLSEASTTFYSSPRSPTTT-LSPASMTSLGVGEESTTSRSQPGSTHSTV 773
>gi|31581524 cordon-bleu homolog [Homo sapiens]
Length = 1261
Score = 34.7 bits (78), Expect = 0.34
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSH 234
P+PPPP PPP+ +TEDK EE + S + S S SH
Sbjct: 336 PAPPPPQPPPPSPLIPNRTEDK--------EENRKSTMVSLPLGSGSH 375
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 34.3 bits (77), Expect = 0.45
Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 23/96 (23%)
Query: 186 LPSPPPPLS--PPPTTSPHKQ------------------TEDKGVQ--CEEEEEEKKDSG 223
+PS PPP + PPP +P Q TE+ GV+ EEEEEE+++
Sbjct: 973 VPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEE 1032
Query: 224 VASTEDSSSSHITAAAIAAKKHPFYTSPAVVMAHGE 259
E+ T A A P T+P+ G+
Sbjct: 1033 EEEEEEEQQPATTTATSTAAAAP-STAPSAGSTAGD 1067
Score = 30.4 bits (67), Expect = 6.5
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVAST 227
P+ P S T SP ++ E++ + EEEE+E+++ G++ +
Sbjct: 253 PTGSNPSSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQS 293
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 34.3 bits (77), Expect = 0.45
Identities = 41/191 (21%), Positives = 68/191 (35%), Gaps = 23/191 (12%)
Query: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPFY 248
PP P+ PP Q ED CEEE E+ D V ++ AAI +
Sbjct: 588 PPAPVDPPVVY----QVEDV---CEEEMPEESDECVRMDRTPPPPTLSPAAITVGRGEDL 640
Query: 249 TSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTPSESPRAQA 308
TS ++ E P + +S V P D + +S P A
Sbjct: 641 TSEHPLLEQVELPAV----------------ASVSASVIKSPSDPSHVSVPPPPLLLPAA 684
Query: 309 TSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMDKAFITVLE 368
T+R ++ S + + I++ I + + PFP++ ++
Sbjct: 685 TTRSNSTSMHSSIPSIENKPPQAIVKPQILTHVIEGFVIQEGLEPFPVSRSSLLIEQPVK 744
Query: 369 MTPVLGTEIIN 379
P+L ++IN
Sbjct: 745 KRPLLDNQVIN 755
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 34.3 bits (77), Expect = 0.45
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 12/128 (9%)
Query: 189 PPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPFY 248
PPP L PP T+P + V+ +EE + +A HI+ A + P
Sbjct: 1567 PPPSLRSPPETAPEPAGPELDVEAAADEEA---ATLAEPGPQPCLHISIAGSGLEMTP-- 1621
Query: 249 TSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTPSESPRAQA 308
+ G+ P P L+ + S DE P + Q R T S S E+P ++
Sbjct: 1622 -----GLGEGD-PRPELVPFDSDSDDESSPSPSGTLQSQA-SRSTISSSFGNEETPSSKE 1674
Query: 309 TSRLSTAS 316
+ +T+S
Sbjct: 1675 ATAETTSS 1682
>gi|12232415 hypothetical protein LOC64762 [Homo sapiens]
Length = 875
Score = 33.9 bits (76), Expect = 0.59
Identities = 40/164 (24%), Positives = 62/164 (37%), Gaps = 27/164 (16%)
Query: 196 PPTTSPHKQTEDKGVQCEEEEEEKKDSGVAST----------EDSSSSHITAAAIAAKKH 245
P P++ + D G E ++ +G+ E+ SH ++K+
Sbjct: 417 PHDILPYQDSGDSGSDYLFPEASEESAGIPGKSELPYEELWLEEGKPSHQPLTRSLSEKN 476
Query: 246 ---PFYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSII---SRGVQ----------VL 289
F S A PIPG + + S+D +P + S V+ V
Sbjct: 477 RCDQFRGSVRSKCATSPLPIPGTLGAAVKSSDTALPPPPVPPKSEAVREECRLLNAPPVP 536
Query: 290 PRDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENIL 333
PR LST+PS PR +R T S P+P + S NI+
Sbjct: 537 PRSAKPLSTSPSIPPRTVKPARQQTRS-PSPTLSYYSSGLHNIV 579
>gi|21361472 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 3 [Homo sapiens]
Length = 955
Score = 33.9 bits (76), Expect = 0.59
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 186 LPSPPPPLSPPPTTSPHKQTED--KGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAK 243
L PPPP SP TSP + +E+ + +Q + ++ S + E SS + A
Sbjct: 289 LALPPPPASPGSRTSPQELSEELSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDAVA 348
Query: 244 KHPFYTSPAVVMAHGEQPIP----------GLINYSHHSTDERIPDSIISRGVQVLPRDT 293
+ P+V H +P G Y +H+ + +R + L D
Sbjct: 349 EQGHLPPPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNN----RTTTWTRPIMQLAEDG 404
Query: 294 ASLSTTPSES 303
AS S T S +
Sbjct: 405 ASGSATNSNN 414
>gi|222352094 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 6 [Homo sapiens]
Length = 834
Score = 33.9 bits (76), Expect = 0.59
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 186 LPSPPPPLSPPPTTSPHKQTED--KGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAK 243
L PPPP SP TSP + +E+ + +Q + ++ S + E SS + A
Sbjct: 168 LALPPPPASPGSRTSPQELSEELSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDAVA 227
Query: 244 KHPFYTSPAVVMAHGEQPIP----------GLINYSHHSTDERIPDSIISRGVQVLPRDT 293
+ P+V H +P G Y +H+ + +R + L D
Sbjct: 228 EQGHLPPPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNN----RTTTWTRPIMQLAEDG 283
Query: 294 ASLSTTPSES 303
AS S T S +
Sbjct: 284 ASGSATNSNN 293
>gi|222352092 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 6 [Homo sapiens]
Length = 834
Score = 33.9 bits (76), Expect = 0.59
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 186 LPSPPPPLSPPPTTSPHKQTED--KGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAK 243
L PPPP SP TSP + +E+ + +Q + ++ S + E SS + A
Sbjct: 168 LALPPPPASPGSRTSPQELSEELSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDAVA 227
Query: 244 KHPFYTSPAVVMAHGEQPIP----------GLINYSHHSTDERIPDSIISRGVQVLPRDT 293
+ P+V H +P G Y +H+ + +R + L D
Sbjct: 228 EQGHLPPPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNN----RTTTWTRPIMQLAEDG 283
Query: 294 ASLSTTPSES 303
AS S T S +
Sbjct: 284 ASGSATNSNN 293
>gi|222352090 neural precursor cell expressed, developmentally
down-regulated 4-like isoform 5 [Homo sapiens]
Length = 947
Score = 33.9 bits (76), Expect = 0.59
Identities = 32/130 (24%), Positives = 51/130 (39%), Gaps = 16/130 (12%)
Query: 186 LPSPPPPLSPPPTTSPHKQTED--KGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAK 243
L PPPP SP TSP + +E+ + +Q + ++ S + E SS + A
Sbjct: 281 LALPPPPASPGSRTSPQELSEELSRRLQITPDSNGEQFSSLIQREPSSRLRSCSVTDAVA 340
Query: 244 KHPFYTSPAVVMAHGEQPIP----------GLINYSHHSTDERIPDSIISRGVQVLPRDT 293
+ P+V H +P G Y +H+ + +R + L D
Sbjct: 341 EQGHLPPPSVAYVHTTPGLPSGWEERKDAKGRTYYVNHNN----RTTTWTRPIMQLAEDG 396
Query: 294 ASLSTTPSES 303
AS S T S +
Sbjct: 397 ASGSATNSNN 406
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 33.9 bits (76), Expect = 0.59
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKK-- 244
P P PP PPP + + E S +S+ SSSS ++++ AKK
Sbjct: 64 PPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123
Query: 245 ---HPFYTSPAVVMAHGEQPIP--GLINYSHH 271
P + +P + P P G+++ S H
Sbjct: 124 PPLPPAFGAPPPPLFDAAFPTPQWGIVDLSGH 155
Score = 31.2 bits (69), Expect = 3.8
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPF 247
+P PP PPP P + + + E S +S+ SSSS ++++ ++
Sbjct: 61 APGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAK 120
Query: 248 YTSPAVVMAHGEQPIP 263
P + A G P P
Sbjct: 121 KPDPPLPPAFGAPPPP 136
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 33.9 bits (76), Expect = 0.59
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 7/92 (7%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKK-- 244
P P PP PPP + + E S +S+ SSSS ++++ AKK
Sbjct: 64 PPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAKKPD 123
Query: 245 ---HPFYTSPAVVMAHGEQPIP--GLINYSHH 271
P + +P + P P G+++ S H
Sbjct: 124 PPLPPAFGAPPPPLFDAAFPTPQWGIVDLSGH 155
Score = 31.2 bits (69), Expect = 3.8
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 188 SPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHPF 247
+P PP PPP P + + + E S +S+ SSSS ++++ ++
Sbjct: 61 APGPPPQPPPQPPPPQYDYPPQSTFKPKAEVPSSSSSSSSSSSSSSSSSSSSSSSSSQAK 120
Query: 248 YTSPAVVMAHGEQPIP 263
P + A G P P
Sbjct: 121 KPDPPLPPAFGAPPPP 136
>gi|239743291 PREDICTED: mucin 3A, intestinal [Homo sapiens]
Length = 1486
Score = 33.9 bits (76), Expect = 0.59
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 249 TSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIIS--RGVQVLPRDTASLSTTPSESPRA 306
+SP+ A E PI + S +TD +I S R + P T S+ TT S +P
Sbjct: 188 SSPSTTTAR-ETPIVTVTPSSVSATDTTFHTTISSTTRTTERTPLPTGSIHTTTSPTP-- 244
Query: 307 QATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMDKAFITV 366
+ L TA T + S +S + + +A P ++ T+
Sbjct: 245 -VFTTLKTAVTSTSPITSSITSTNTVTSMTTTA-----------SQPTATNTLSSPTRTI 292
Query: 367 LEMTPVLGTEII 378
L TPVL TE I
Sbjct: 293 LSSTPVLSTETI 304
Score = 32.7 bits (73), Expect = 1.3
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 25/208 (12%)
Query: 185 DLPSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSG---------VASTEDSSSSHI 235
D PS P +S PT + H + +Q E + + TE++ S
Sbjct: 671 DFPSIPTDISTLPTRT-HIISSSPSIQSTETSSLVGTTSPTMSTVRMTLRITENTPISSF 729
Query: 236 TAAAIAAKKHPFYTSPAVVMAHGEQPIPGLINYSHHSTDERIP-----------DSIISR 284
+ + + + P T P + A G Q P + STD +I+S
Sbjct: 730 STSIVVIPETPTQTPPVLTSATGTQTSPAPTTVTFGSTDSSTSTLHTLTPSTALSTIVST 789
Query: 285 GVQVLP-RDTASLSTTPSESPRAQATSRLSTASCPTPKVQSRCSSKENILRASHSAVDIT 343
+P +++L TTPS +P Q TS ST+ T +R S+ N + S S + +
Sbjct: 790 SQVPIPSTHSSTLQTTPS-TPSLQ-TSLTSTSEFTTESF-TRGSTSTNAILTSFSTIIWS 846
Query: 344 KVARRHRMSPFPLTSMDKAFITVLEMTP 371
S S+ F T + P
Sbjct: 847 STPTIIMSSSPSSASITPVFSTTIHSVP 874
>gi|239508973 PREDICTED: similar to Mucin-3A [Homo sapiens]
Length = 596
Score = 33.9 bits (76), Expect = 0.59
Identities = 36/132 (27%), Positives = 53/132 (40%), Gaps = 17/132 (12%)
Query: 249 TSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIIS--RGVQVLPRDTASLSTTPSESPRA 306
+SP+ A E PI + S +TD +I S R + P T S+ TT S +P
Sbjct: 188 SSPSTTTAR-ETPIVTVTPSSVSATDTTFHTTISSTTRTTERTPLPTGSIHTTTSPTP-- 244
Query: 307 QATSRLSTASCPTPKVQSRCSSKENILRASHSAVDITKVARRHRMSPFPLTSMDKAFITV 366
+ L TA T + S +S + + +A P ++ T+
Sbjct: 245 -VFTTLKTAVTSTSPITSSITSTNTVTSMTTTA-----------SQPTATNTLSSPTRTI 292
Query: 367 LEMTPVLGTEII 378
L TPVL TE I
Sbjct: 293 LSSTPVLSTETI 304
>gi|62460633 RNA-binding motif protein 16 [Homo sapiens]
Length = 1271
Score = 33.9 bits (76), Expect = 0.59
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 3/100 (3%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHP 246
P PPP+ PPPT P T E KD G S S + A +A
Sbjct: 695 PPVPPPVVPPPTIPPVVPTSLVQPSLSMTPETVKDVGFGSLVIPGGSVASNLATSALPAG 754
Query: 247 FYTSPAVVMAHGEQPIPGLINY---SHHSTDERIPDSIIS 283
+ A E+ +P LI++ S +T IP+ I S
Sbjct: 755 NVFNAPTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISS 794
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 33.9 bits (76), Expect = 0.59
Identities = 94/427 (22%), Positives = 147/427 (34%), Gaps = 59/427 (13%)
Query: 187 PSPPPPLSPPPTTSPHKQTEDKGVQCEEEEEEKKDSGVASTEDSSSSHITAAAIAAKKHP 246
PSP L PP TSP + EK + A +S +T +++ K P
Sbjct: 1594 PSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSL--KDSP 1651
Query: 247 FYTSPAVVMAHGEQPIPGLINYSHHSTDERIPDSIISRGVQVLPRDTASLSTTPSESPRA 306
TSPA V +P S ++ P ++ V P T ++ + P+
Sbjct: 1652 --TSPASVTCKMGATVP---QASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQT 1706
Query: 307 QATSRLSTASCPTPK-------------------VQSRCSSKENILRASHSAVDITKVAR 347
+ +S S CP P VQ S ASHS +A
Sbjct: 1707 KKSSATSPPICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSPKG--PLAP 1764
Query: 348 RHRMSPFPLTSMDKAFITVLEMTPVLGTEIINYRDGMGRVLAQDVY-----AKDNLPPFP 402
+ PLT+ AF VL P + + LA + LP P
Sbjct: 1765 PESKASTPLTA--AAFEKVLP-KPESASVSAAPSPPVSLPLAPSPVPTLPPKQQFLPSSP 1821
Query: 403 ASVKDGYAVRAADGPGDR---FIIGESQAGEQPTQTVMPGQVMRVTTGAPIPCGADAVVQ 459
V + + A D I E +G P Q+V+ + G P+P +
Sbjct: 1822 GLVLESPSKPLAPADEDELLPLIPPEPISGGVPFQSVLVNMPTPKSAGIPVPTPSAKQPV 1881
Query: 460 VEDTE---LIRESDDGTEELEVRILVQARPGQ---------DIRPIGHDIKRGECVLAKG 507
++ + +SD+ ELE + QA Q D P+ K + K
Sbjct: 1882 TKNNKGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEIDEEPVS---KAKQSRSEKK 1938
Query: 508 THMGPSEIGLLATVGVTEVEVNKFP-VVAVMSTGNELLNPEDDLL----PGKIRDSNRST 562
S++GL GVT V + K ++ V++ + +P D KI D ++
Sbjct: 1939 ARKAMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQA 1998
Query: 563 LLATIQE 569
LA ++
Sbjct: 1999 QLAAAEK 2005
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,849,889
Number of Sequences: 37866
Number of extensions: 1698705
Number of successful extensions: 13059
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 134
Number of HSP's that attempted gapping in prelim test: 12040
Number of HSP's gapped (non-prelim): 917
length of query: 769
length of database: 18,247,518
effective HSP length: 110
effective length of query: 659
effective length of database: 14,082,258
effective search space: 9280208022
effective search space used: 9280208022
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.