Guide to the Human Genome
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Name: PTPN20B Sequence: fasta or formatted (136aa) NCBI GI: 108802615
Description:

protein tyrosine phosphatase, non-receptor type 20 isoform 7

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [420aa] protein tyrosine phosphatase, non-receptor type 20 isoform 1
alt prot [411aa] protein tyrosine phosphatase, non-receptor type 20 isoform 3
alt prot [269aa] protein tyrosine phosphatase, non-receptor type 20 isoform 4
alt prot [228aa] protein tyrosine phosphatase, non-receptor type 20 isoform 5
alt prot [217aa] protein tyrosine phosphatase, non-receptor type 20 isoform 6
alt prot [339aa] protein tyrosine phosphatase, non-receptor type 20 isoform 8
alt prot [145aa] protein tyrosine phosphatase, non-receptor type 20 isoform 9
alt prot [64aa] protein tyrosine phosphatase, non-receptor type 20 isoform 10
alt prot [226aa] protein tyrosine phosphatase, non-receptor type 20 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          7           2
 C cysteine            0.7          1           1
 D aspartate           5.9          8           1
 E glutamate          11.8         16           2
 F phenylalanine       4.4          6           1
 G glycine             5.9          8           1
 H histidine           2.9          4           2
 I isoleucine          0.7          1           1
 K lysine              2.9          4           1
 L leucine             7.4         10           3
 M methionine          1.5          2           1
 N asparagine          7.4         10           1
 P proline             6.6          9           1
 Q glutamine           2.2          3           1
 R arginine            6.6          9           2
 S serine             14.0         19           3
 T threonine           3.7          5           2
 V valine              5.1          7           1
 W tryptophan          2.2          3           1
 Y tyrosine            2.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, non-receptor type 20 ... 
PTPN20A               1.000   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.727   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.727   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.727   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.727   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.727   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.727   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.715   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.715   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.715   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.715   protein tyrosine phosphatase, non-receptor type 20 i...
PTPN20B               0.442   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.442   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.192   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.192   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.173   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.173   protein tyrosine phosphatase, non-receptor type 20 ...
ZNF496                0.023   zinc finger protein 496 
DDX10                 0.023   DEAD (Asp-Glu-Ala-Asp) box polypeptide 10 
ZNF18                 0.015   zinc finger protein 18 
SLFNL1                0.015   schlafen-like 1 
ARID1A                0.012   AT rich interactive domain 1A isoform a 
ARID1A                0.012   AT rich interactive domain 1A isoform b 
ZNF263                0.012   zinc finger protein 263 
IRF2BP2               0.012   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.012   interferon regulatory factor 2 binding protein 2 is...
MUC16                 0.012   mucin 16 
ZNF500                0.012   zinc finger protein 500 
C1orf168              0.012   hypothetical protein LOC199920 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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