Guide to the Human Genome
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Name: PTPN20A Sequence: fasta or formatted (64aa) NCBI GI: 109138575
Description:

protein tyrosine phosphatase, non-receptor type 20A isoform 10

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [420aa] protein tyrosine phosphatase, non-receptor type 20A isoform 1
alt prot [226aa] protein tyrosine phosphatase, non-receptor type 20A isoform 2
alt prot [411aa] protein tyrosine phosphatase, non-receptor type 20A isoform 3
alt prot [269aa] protein tyrosine phosphatase, non-receptor type 20A isoform 4
alt prot [228aa] protein tyrosine phosphatase, non-receptor type 20A isoform 5
alt prot [217aa] protein tyrosine phosphatase, non-receptor type 20A isoform 6
alt prot [136aa] protein tyrosine phosphatase, non-receptor type 20A isoform 7
alt prot [145aa] protein tyrosine phosphatase, non-receptor type 20A isoform 9
alt prot [339aa] protein tyrosine phosphatase, non-receptor type 20A isoform 8
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4          6           2
 C cysteine            1.6          1           1
 D aspartate           3.1          2           1
 E glutamate           7.8          5           2
 F phenylalanine       3.1          2           1
 G glycine             9.4          6           1
 H histidine           4.7          3           2
 I isoleucine          0.0          0           0
 K lysine              0.0          0           0
 L leucine             9.4          6           3
 M methionine          1.6          1           1
 N asparagine          3.1          2           1
 P proline             6.2          4           1
 Q glutamine           3.1          2           1
 R arginine            9.4          6           2
 S serine             12.5          8           2
 T threonine           4.7          3           2
 V valine              3.1          2           1
 W tryptophan          4.7          3           1
 Y tyrosine            3.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   protein tyrosine phosphatase, non-receptor type 20A... 
PTPN20B               1.000   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               1.000   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               1.000   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.435   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.435   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.435   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.435   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.435   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.435   protein tyrosine phosphatase, non-receptor type 20 i...
PTPN20B               0.391   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20A               0.391   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.391   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.391   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20A               0.391   protein tyrosine phosphatase, non-receptor type 20A...
PTPN20B               0.391   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.391   protein tyrosine phosphatase, non-receptor type 20 ...
PTPN20B               0.391   protein tyrosine phosphatase, non-receptor type 20 ...
ZNF263                0.017   zinc finger protein 263 
IRF2BP2               0.017   interferon regulatory factor 2 binding protein 2 is...
IRF2BP2               0.017   interferon regulatory factor 2 binding protein 2 is...
NPAS4                 0.009   neuronal PAS domain protein 4 
HLX                   0.009   H2.0-like homeobox 
CA14                  0.009   carbonic anhydrase XIV precursor 
CD248                 0.009   tumor endothelial marker 1 precursor 
ZNF554                0.009   zinc finger protein 554 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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