Guide to the Human Genome
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Name: HSBP1 Sequence: fasta or formatted (76aa) NCBI GI: 4557647
Description:

heat shock factor binding protein 1

Referenced in:

Heat-Shock Proteins and Chaperonins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3          4           1
 C cysteine            0.0          0           0
 D aspartate          11.8          9           2
 E glutamate           7.9          6           2
 F phenylalanine       1.3          1           1
 G glycine             2.6          2           1
 H histidine           0.0          0           0
 I isoleucine          7.9          6           2
 K lysine              6.6          5           1
 L leucine             7.9          6           2
 M methionine          6.6          5           1
 N asparagine          2.6          2           1
 P proline             2.6          2           1
 Q glutamine          11.8          9           2
 R arginine            2.6          2           1
 S serine              7.9          6           2
 T threonine           9.2          7           1
 V valine              5.3          4           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   heat shock factor binding protein 1 
LOC100291861          0.820   PREDICTED: similar to heat shock factor binding pro...
LOC100290361          0.820   PREDICTED: hypothetical protein XP_002346659 
LOC100288483          0.820   PREDICTED: hypothetical protein XP_002342506 
LOC440498             0.213   heat shock factor binding protein 1-like 
LAMA2                 0.033   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.033   laminin alpha 2 subunit isoform a precursor 
SYNE2                 0.033   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.033   spectrin repeat containing, nuclear envelope 2 isof...
L1TD1                 0.033   LINE-1 type transposase domain containing 1 
CCDC114               0.033   coiled-coil domain containing 114 isoform 2 
GOLGA4                0.025   golgi autoantigen, golgin subfamily a, 4 
MYH9                  0.016   myosin, heavy polypeptide 9, non-muscle 
ADH1A                 0.016   class I alcohol dehydrogenase, alpha subunit 
ADH1B                 0.016   class I alcohol dehydrogenase, beta subunit 
ADH1C                 0.016   class I alcohol dehydrogenase, gamma subunit 
CEP250                0.016   centrosomal protein 2 
MYH3                  0.016   myosin, heavy chain 3, skeletal muscle, embryonic [H...
FILIP1L               0.016   filamin A interacting protein 1-like isoform 3 [Hom...
FILIP1L               0.016   filamin A interacting protein 1-like isoform 2 [Hom...
FILIP1L               0.016   filamin A interacting protein 1-like isoform 1 [Hom...
SCARA3                0.016   scavenger receptor class A, member 3 isoform 1 [Homo...
SCARA3                0.016   scavenger receptor class A, member 3 isoform 2 [Homo...
CASC5                 0.016   cancer susceptibility candidate 5 isoform 2 
CASC5                 0.016   cancer susceptibility candidate 5 isoform 1 
MYH13                 0.016   myosin, heavy polypeptide 13, skeletal muscle [Homo...
DST                   0.016   dystonin isoform 4 
DST                   0.016   dystonin isoform 3 
DST                   0.016   dystonin isoform 2 
DST                   0.016   dystonin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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