Guide to the Human Genome
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Name: SPINK1 Sequence: fasta or formatted (79aa) NCBI GI: 45505132
Description:

serine protease inhibitor, Kazal type 1 precursor

Referenced in:

Protease Inhibitors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          4           1
 C cysteine            7.6          6           1
 D aspartate           3.8          3           1
 E glutamate           5.1          4           1
 F phenylalanine       2.5          2           1
 G glycine            10.1          8           1
 H histidine           0.0          0           0
 I isoleucine          5.1          4           1
 K lysine              6.3          5           1
 L leucine            12.7         10           2
 M methionine          1.3          1           1
 N asparagine          7.6          6           1
 P proline             3.8          3           1
 Q glutamine           2.5          2           1
 R arginine            3.8          3           1
 S serine              7.6          6           1
 T threonine           7.6          6           1
 V valine              3.8          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            3.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   serine protease inhibitor, Kazal type 1 precursor [H... 
SPINK2                0.204   serine protease inhibitor, Kazal type 2 (acrosin-try...
SPINK5                0.183   serine peptidase inhibitor, Kazal type 5 isoform b p...
SPINK5                0.183   serine peptidase inhibitor, Kazal type 5 isoform a ...
SPINK5                0.176   serine peptidase inhibitor, Kazal type 5 isoform c ...
SPINK9                0.176   serine peptidase inhibitor, Kazal type 9 
SPINK6                0.169   serine protease inhibitor, Kazal type 6 
AGRN                  0.155   agrin 
SPINK4                0.148   serine peptidase inhibitor, Kazal type 4 
SPINK5L2              0.141   Kazal type serine protease inhibitor 5-like 2 
SPINK7                0.127   esophagus cancer-related gene-2 
TMEFF2                0.120   transmembrane protein with EGF-like and two follista...
TMEFF1                0.120   transmembrane protein with EGF-like and two follista...
SPINK5L3              0.120   serine PI Kazal type 5-like 3 
FST                   0.099   follistatin isoform FST317 precursor 
FST                   0.099   follistatin isoform FST344 precursor 
HTRA4                 0.063   HtrA serine peptidase 4 precursor 
FSTL4                 0.056   follistatin-like 4 
HTRA1                 0.049   HtrA serine peptidase 1 precursor 
SLCO1A2               0.049   organic anion transporting polypeptide A 
SLCO1A2               0.049   organic anion transporting polypeptide A 
FSTL5                 0.049   follistatin-like 5 isoform c 
FSTL5                 0.049   follistatin-like 5 isoform b 
FSTL5                 0.049   follistatin-like 5 isoform a 
SPOCK3                0.049   testican 3 isoform 1 
SPOCK3                0.049   testican 3 isoform 2 
HTRA3                 0.049   HtrA serine peptidase 3 
SLCO5A1               0.042   solute carrier organic anion transporter family, me...
SLCO5A1               0.042   solute carrier organic anion transporter family, me...
SLCO5A1               0.042   solute carrier organic anion transporter family, me...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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