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Search of human proteins with 4507341
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
(129 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens] 261 1e-70
gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens] 224 1e-59
gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens] 213 3e-56
gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens] 177 3e-45
gi|117938256 tachykinin 4 isoform alpha [Homo sapiens] 29 0.90
gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor... 28 1.5
gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens] 28 1.5
gi|117938258 tachykinin 4 isoform beta [Homo sapiens] 28 1.5
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 27 4.5
gi|41406055 amyloid beta A4 protein isoform b precursor [Homo sa... 27 4.5
gi|4502167 amyloid beta A4 protein isoform a precursor [Homo sap... 27 4.5
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 27 4.5
gi|209915573 amyloid beta A4 protein isoform f precursor [Homo s... 27 4.5
gi|39753957 lamina-associated polypeptide 1B [Homo sapiens] 27 4.5
gi|207028821 RNA binding motif protein 44 [Homo sapiens] 26 7.6
gi|31543535 R3H domain containing 1 [Homo sapiens] 26 9.9
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 26 9.9
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 26 9.9
>gi|4507341 tachykinin 1 isoform beta precursor [Homo sapiens]
Length = 129
Score = 261 bits (667), Expect = 1e-70
Identities = 129/129 (100%), Positives = 129/129 (100%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
Query: 121 AMQNYERRR 129
AMQNYERRR
Sbjct: 121 AMQNYERRR 129
>gi|7770077 tachykinin 1 isoform gamma precursor [Homo sapiens]
Length = 114
Score = 224 bits (572), Expect = 1e-59
Identities = 114/129 (88%), Positives = 114/129 (88%), Gaps = 15/129 (11%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
PQQFFGLMGKRDA GHGQISHKRHKTDSFVGLMGKRALNSVAYERS
Sbjct: 61 PQQFFGLMGKRDA---------------GHGQISHKRHKTDSFVGLMGKRALNSVAYERS 105
Query: 121 AMQNYERRR 129
AMQNYERRR
Sbjct: 106 AMQNYERRR 114
>gi|7770075 tachykinin 1 isoform alpha precursor [Homo sapiens]
Length = 111
Score = 213 bits (543), Expect = 3e-56
Identities = 110/129 (85%), Positives = 111/129 (86%), Gaps = 18/129 (13%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK +AYERS
Sbjct: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHK------------------MAYERS 102
Query: 121 AMQNYERRR 129
AMQNYERRR
Sbjct: 103 AMQNYERRR 111
>gi|7770079 tachykinin 1 isoform delta precursor [Homo sapiens]
Length = 96
Score = 177 bits (448), Expect = 3e-45
Identities = 95/129 (73%), Positives = 96/129 (74%), Gaps = 33/129 (25%)
Query: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK
Sbjct: 1 MKILVALAVFFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRIARRPK 60
Query: 61 PQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYERS 120
PQQFFGLMGKRDA GHGQISHK +AYERS
Sbjct: 61 PQQFFGLMGKRDA---------------GHGQISHK------------------MAYERS 87
Query: 121 AMQNYERRR 129
AMQNYERRR
Sbjct: 88 AMQNYERRR 96
>gi|117938256 tachykinin 4 isoform alpha [Homo sapiens]
Length = 113
Score = 29.3 bits (64), Expect = 0.90
Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 19/84 (22%)
Query: 42 EELPEPFEHLLQRIARRPKPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKT- 100
EE P L + + K QFFGLMGKR + G I +R K
Sbjct: 41 EEGAGPSIQLQLQEVKTGKASQFFGLMGKR---------------VGGRPLIQPRRKKAY 85
Query: 101 ---DSFVGLMGKRALNSVAYERSA 121
+F GL+GKR+L + E A
Sbjct: 86 QLEHTFQGLLGKRSLFTEGREDEA 109
>gi|4503273 angiotensin I converting enzyme 1 isoform 1 precursor
[Homo sapiens]
Length = 1306
Score = 28.5 bits (62), Expect = 1.5
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 10 FFLVSTQLFAEEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQRI 55
F +S + + ++ G D YW WY+S +++L EHL Q++
Sbjct: 207 FTALSNEAYKQD-GFTDTGAYWRSWYNSPTFEDDL----EHLYQQL 247
>gi|117938264 tachykinin 4 isoform alpha-2 [Homo sapiens]
Length = 107
Score = 28.5 bits (62), Expect = 1.5
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 60 KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKT----DSFVGLMGKRALNSV 115
K QFFGLMGKR + G I +R K +F GL+GKR+L +
Sbjct: 53 KASQFFGLMGKR---------------VGGRPLIQPRRKKAYQLEHTFQGLLGKRSLFTE 97
Query: 116 AYERSA 121
E A
Sbjct: 98 GREDEA 103
>gi|117938258 tachykinin 4 isoform beta [Homo sapiens]
Length = 96
Score = 28.5 bits (62), Expect = 1.5
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 22/62 (35%)
Query: 60 KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKRALNSVAYER 119
K QFFGLMGKR G Q+ H +F GL+GKR+L + E
Sbjct: 53 KASQFFGLMGKR----------------VGAYQLEH------TFQGLLGKRSLFTEGRED 90
Query: 120 SA 121
A
Sbjct: 91 EA 92
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|41406055 amyloid beta A4 protein isoform b precursor [Homo
sapiens]
Length = 751
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|4502167 amyloid beta A4 protein isoform a precursor [Homo
sapiens]
Length = 770
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 238 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 268
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|209915573 amyloid beta A4 protein isoform f precursor [Homo
sapiens]
Length = 714
Score = 26.9 bits (58), Expect = 4.5
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query: 20 EEIGANDDLNYWSDWYDSDQIKEELPEPFEHLLQR 54
EE A+DD D D D+++EE EP+E +R
Sbjct: 182 EEEEADDD----EDDEDGDEVEEEAEEPYEEATER 212
>gi|39753957 lamina-associated polypeptide 1B [Homo sapiens]
Length = 583
Score = 26.9 bits (58), Expect = 4.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 35 YDSDQIKEELPEPFEHLLQRIARRPKPQQ 63
+ SD KEE+ E +L R R+P+PQ+
Sbjct: 90 FRSDSAKEEVRESAYYLRSRQRRQPRPQE 118
>gi|207028821 RNA binding motif protein 44 [Homo sapiens]
Length = 1052
Score = 26.2 bits (56), Expect = 7.6
Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 14 STQLFAEEIGANDDLNY----WSDWYDSDQIKEELPEPFEHLLQRIARRPKPQQFFGLMG 69
STQ + E+ + D + +S Y ++K+E P L ++ K + FF ++
Sbjct: 92 STQFQSSELEDSTDYAFLNKTYSIPYSESKLKKESLTPLSSELDPEVQK-KEEVFFNILE 150
Query: 70 KRDADSSIEKQVALLKALYGHGQISHKRHKTD 101
+D +E+ + A Y ++H TD
Sbjct: 151 HQDKTVGLERIYNISDANYRESAEDTQKHDTD 182
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 25.8 bits (55), Expect = 9.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 37 SDQIKEELPEPFEHLLQRIARRPKPQQFFGLMGKRDADSSIEKQVALL 84
S+ + L E EH ++ +P Q FG GKR SS K V L
Sbjct: 35 SENYGKILVEKNEHCIENNIDLQRPLQSFGQTGKRSKSSSKLKLVRSL 82
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 25.8 bits (55), Expect = 9.9
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 54 RIARRP---KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKR 110
RIA RP P+ L +R S + +++ + Y +S++R S + M +R
Sbjct: 978 RIAPRPYRLAPRPLM-LASRRSMMMSYAAERSMMSS-YERSMMSYER----SMMSPMAER 1031
Query: 111 ALNSVAYERSAMQNYER 127
++ S AYERS M YER
Sbjct: 1032 SMMS-AYERSMMSAYER 1047
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 25.8 bits (55), Expect = 9.9
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 54 RIARRP---KPQQFFGLMGKRDADSSIEKQVALLKALYGHGQISHKRHKTDSFVGLMGKR 110
RIA RP P+ L +R S + +++ + Y +S++R S + M +R
Sbjct: 978 RIAPRPYRLAPRPLM-LASRRSMMMSYAAERSMMSS-YERSMMSYER----SMMSPMAER 1031
Query: 111 ALNSVAYERSAMQNYER 127
++ S AYERS M YER
Sbjct: 1032 SMMS-AYERSMMSAYER 1047
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.135 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,527,945
Number of Sequences: 37866
Number of extensions: 188909
Number of successful extensions: 461
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 22
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.