Search of human proteins with 4506743

Search of human proteins with 4506743

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506743 ribosomal protein S8 [Homo sapiens]
         (208 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506743 ribosomal protein S8 [Homo sapiens]                        428   e-120
gi|14149793 glutamine rich 2 [Homo sapiens]                            33   0.13 
gi|223972685 IQ motif and ubiquitin domain containing [Homo sapi...    33   0.17 
gi|110832835 ATP-binding cassette, sub-family C, member 9 isofor...    31   0.85 
gi|110832837 ATP-binding cassette, sub-family C, member 9 isofor...    31   0.85 
gi|14140236 solute carrier family 5 (low affinity glucose cotran...    30   1.5  
gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo...    30   1.9  
gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens]    29   2.5  
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]            29   3.2  
gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo sapi...    29   3.2  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           28   4.2  
gi|222446611 R-spondin family, member 2 [Homo sapiens]                 28   5.5  
gi|189083802 myosin VIIA isoform 2 [Homo sapiens]                      28   5.5  
gi|189083800 myosin VIIA isoform 3 [Homo sapiens]                      28   5.5  
gi|189083798 myosin VIIA isoform 1 [Homo sapiens]                      28   5.5  
gi|221316624 dystonin isoform 4 [Homo sapiens]                         28   5.5  
gi|221316622 dystonin isoform 3 [Homo sapiens]                         28   5.5  
gi|221316618 dystonin isoform 2 [Homo sapiens]                         28   5.5  
gi|34577047 dystonin isoform 1 [Homo sapiens]                          28   5.5  
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]              28   5.5  
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]    28   5.5  
gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]    28   5.5  
gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]           28   5.5  
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap...    28   5.5  
gi|153791492 eukaryotic translation initiation factor 3, subunit...    28   7.2  
gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]       28   7.2  
gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]       28   7.2  
gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]       28   7.2  
gi|4506123 PRP18 pre-mRNA processing factor 18 homolog [Homo sap...    28   7.2  
gi|83700233 eukaryotic translation initiation factor 3, subunit ...    28   7.2  

>gi|4506743 ribosomal protein S8 [Homo sapiens]
          Length = 208

 Score =  428 bits (1101), Expect = e-120
 Identities = 208/208 (100%), Positives = 208/208 (100%)

Query: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60
           MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL
Sbjct: 1   MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRL 60

Query: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120
           DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP
Sbjct: 61  DVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALP 120

Query: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180
           LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG
Sbjct: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPG 180

Query: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208
           QCGRADGYVLEGKELEFYLRKIKARKGK
Sbjct: 181 QCGRADGYVLEGKELEFYLRKIKARKGK 208


>gi|14149793 glutamine rich 2 [Homo sapiens]
          Length = 1663

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 109  YRQWYESHYALPLGR-KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQ 167
            Y Q  +   +L + R  K AKL  ++EE+L + +S  +Q + D  K N   S+L+E+  Q
Sbjct: 1231 YEQLQDMVNSLAVSRPSKKAKLQRQDEELLGRVQSAILQVQGDCEKLNITTSNLIEDHRQ 1290

Query: 168  QGKLLACI 175
            + K +A +
Sbjct: 1291 KQKDIAML 1298


>gi|223972685 IQ motif and ubiquitin domain containing [Homo
           sapiens]
          Length = 791

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 102 VLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYD-ERKKNAKISS 160
           V++  T YRQW+   +   L R+K  +L  E ++ L K R K+   K D  R+ N K + 
Sbjct: 342 VIVIQTYYRQWHAKIFVENLRRQKSLRLEWETQQELRKIREKEEWIKLDYHRRHNPKTNE 401

Query: 161 LLE 163
             E
Sbjct: 402 DFE 404


>gi|110832835 ATP-binding cassette, sub-family C, member 9 isoform
           SUR2A [Homo sapiens]
          Length = 1549

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 3   ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIH-------TVRVRGGNKKY 55
           I  D+W    +TG    P+   +K+   +P    +  P R H       T R+R    + 
Sbjct: 614 IGDDSW----RTGESSLPFESCKKHTGVQPKTINRKQPGRYHLDSYEQSTRRLRPAETED 669

Query: 56  RALRLDVGNFSWGSECCT 73
            A+++  G FSWGS   T
Sbjct: 670 IAIKVTNGYFSWGSGLAT 687


>gi|110832837 ATP-binding cassette, sub-family C, member 9 isoform
           SUR2B [Homo sapiens]
          Length = 1549

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 3   ISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIH-------TVRVRGGNKKY 55
           I  D+W    +TG    P+   +K+   +P    +  P R H       T R+R    + 
Sbjct: 614 IGDDSW----RTGESSLPFESCKKHTGVQPKTINRKQPGRYHLDSYEQSTRRLRPAETED 669

Query: 56  RALRLDVGNFSWGSECCT 73
            A+++  G FSWGS   T
Sbjct: 670 IAIKVTNGYFSWGSGLAT 687


>gi|14140236 solute carrier family 5 (low affinity glucose
           cotransporter), member 4 [Homo sapiens]
          Length = 659

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/24 (62%), Positives = 17/24 (70%)

Query: 117 YALPLGRKKGAKLTPEEEEILNKK 140
           Y L  G +KG KLT EEEE L+KK
Sbjct: 603 YDLFCGLQKGPKLTKEEEEALSKK 626


>gi|14670392 bromodomain adjacent to zinc finger domain, 1B [Homo
           sapiens]
          Length = 1483

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/59 (25%), Positives = 31/59 (52%)

Query: 110 RQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 168
           R   +  Y L   +K+ A ++ E+ +   KK+ ++++KK  E+ K  +   +LE   +Q
Sbjct: 519 RSLVQKRYELLEHKKRWASMSEEQRKEYLKKKREELKKKLKEKAKERREKEMLERLEKQ 577


>gi|61743930 zinc finger and BTB domain containing 41 [Homo sapiens]
          Length = 909

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 114 ESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKIS-----SLLEEQFQQ 168
           ++H +L LG+K G K+          KR++K   K+D+   + + S     +L +E F +
Sbjct: 228 KTHRSLLLGKKHGLKMLERSFSARRSKRNRKCPVKFDDTSDDEQESGDGSDNLNQENFDK 287

Query: 169 GKLLACIASRPGQCGRADGYVLEGKELEFY 198
            K     +  PG    A+   LE +  + Y
Sbjct: 288 EKSDRNDSEDPGSEYNAEEDELEEEMSDEY 317


>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 248

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/39 (35%), Positives = 24/39 (61%)

Query: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSL 161
           ++K  +   E+E+   KK+ KK +KK  ++K NAK+  L
Sbjct: 82  KEKEKEKEKEKEKEKEKKKKKKKKKKKKKKKLNAKVCGL 120


>gi|41327771 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 [Homo
           sapiens]
          Length = 820

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 28/119 (23%), Positives = 54/119 (45%), Gaps = 5/119 (4%)

Query: 41  RRIHTVRVR--GGNKKYRALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVK 98
           + +H ++ R  GG KK R  R  + +  +  E    +   ID  YN    E  + + L +
Sbjct: 245 KELHAIKERYLGGIKKRRRTR-HLNDRKFVFEWDASEDTSID--YNPLYKERHQVQLLGR 301

Query: 99  NCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK 157
             I  ID    ++     Y   + +++  +   +EE  L K R K+ ++++D+R  + K
Sbjct: 302 GFIAGIDLKQQKREQSRFYGDLMEKRRTLEEKEQEEARLRKLRKKEAKQRWDDRHWSQK 360


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 131  PEEEEILNKKRSKKIQKKYDERKKNAKISSLLEE 164
            PEEEE L +KR + I+KK    +K  +  + +EE
Sbjct: 1792 PEEEERLGRKREQLIEKKMKLAQKRERWINSMEE 1825


>gi|222446611 R-spondin family, member 2 [Homo sapiens]
          Length = 243

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 8/93 (8%)

Query: 61  DVGNFS-WGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYAL 119
           +VG++S WG+  C+R  R     +          K  VK+ I+       R+   +    
Sbjct: 146 EVGHWSEWGT--CSRNNRTCGFKWGLETRTRQIVKKPVKDTILCPTIAESRRCKMTMRHC 203

Query: 120 PLGRKKGAKLTPEEEEILNKKRSKKIQKKYDER 152
           P     G K TP+ +E  NKK+ +K+ ++  E+
Sbjct: 204 P-----GGKRTPKAKEKRNKKKKRKLIERAQEQ 231


>gi|189083802 myosin VIIA isoform 2 [Homo sapiens]
          Length = 2175

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 168
           L R +  K+   EEE L K+ S K  K+  ERK   +++ L  E  ++
Sbjct: 864 LWRLEAEKMRLAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAER 911


>gi|189083800 myosin VIIA isoform 3 [Homo sapiens]
          Length = 1204

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 168
           L R +  K+   EEE L K+ S K  K+  ERK   +++ L  E  ++
Sbjct: 864 LWRLEAEKMRLAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAER 911


>gi|189083798 myosin VIIA isoform 1 [Homo sapiens]
          Length = 2215

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 121 LGRKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 168
           L R +  K+   EEE L K+ S K  K+  ERK   +++ L  E  ++
Sbjct: 864 LWRLEAEKMRLAEEEKLRKEMSAKKAKEEAERKHQERLAQLAREDAER 911


>gi|221316624 dystonin isoform 4 [Homo sapiens]
          Length = 5526

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 124  KKGAKLTPEEEEILNKKRSKKIQKKYD----ERKKNAKISSLLEEQFQQ 168
            K+G  L+PEE+E L +K  K+++  Y+    E +K  K++  L+E+ ++
Sbjct: 1823 KQGQYLSPEEKEKL-QKNMKELKVHYETALAESEKKMKLTHSLQEELEK 1870


>gi|221316622 dystonin isoform 3 [Homo sapiens]
          Length = 5537

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 124  KKGAKLTPEEEEILNKKRSKKIQKKYD----ERKKNAKISSLLEEQFQQ 168
            K+G  L+PEE+E L +K  K+++  Y+    E +K  K++  L+E+ ++
Sbjct: 1834 KQGQYLSPEEKEKL-QKNMKELKVHYETALAESEKKMKLTHSLQEELEK 1881


>gi|221316618 dystonin isoform 2 [Homo sapiens]
          Length = 5675

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 124  KKGAKLTPEEEEILNKKRSKKIQKKYD----ERKKNAKISSLLEEQFQQ 168
            K+G  L+PEE+E L +K  K+++  Y+    E +K  K++  L+E+ ++
Sbjct: 1972 KQGQYLSPEEKEKL-QKNMKELKVHYETALAESEKKMKLTHSLQEELEK 2019


>gi|34577047 dystonin isoform 1 [Homo sapiens]
          Length = 5497

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 124  KKGAKLTPEEEEILNKKRSKKIQKKYD----ERKKNAKISSLLEEQFQQ 168
            K+G  L+PEE+E L +K  K+++  Y+    E +K  K++  L+E+ ++
Sbjct: 1794 KQGQYLSPEEKEKL-QKNMKELKVHYETALAESEKKMKLTHSLQEELEK 1841


>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
          Length = 5171

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 124  KKGAKLTPEEEEILNKKRSKKIQKKYD----ERKKNAKISSLLEEQFQQ 168
            K+G  L+PEE+E L +K  K+++  Y+    E +K  K++  L+E+ ++
Sbjct: 1468 KQGQYLSPEEKEKL-QKNMKELKVHYETALAESEKKMKLTHSLQEELEK 1515


>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
          Length = 237

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS 160
           R K  K + E E+   K + KK  KK+ ++KK    SS
Sbjct: 195 RAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASS 232


>gi|91206456 hypothetical protein LOC257415 isoform 1 [Homo sapiens]
          Length = 247

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 14/38 (36%), Positives = 20/38 (52%)

Query: 123 RKKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISS 160
           R K  K + E E+   K + KK  KK+ ++KK    SS
Sbjct: 205 RAKKKKSSEEREKATEKTKKKKKHKKHSKKKKKKAASS 242


>gi|119703749 hydrocephalus inducing isoform a [Homo sapiens]
          Length = 5120

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 119  LPLGRKKGAKLTPEEEEILNKKRSKK--IQKKYDERKKNAKISSLLEEQFQQGK 170
            +PLG ++G K    E E L K+R++K  ++++  ER++  K+ +L E    +G+
Sbjct: 2499 VPLGGRRGRK--DRERERLEKERTEKERLEREKAERERLEKLRALEERSDWEGE 2550


>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo
           sapiens]
          Length = 2603

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 128 KLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQ 168
           +LT E+ E LNK R ++IQKK    ++  K+   L+ + QQ
Sbjct: 842 QLTKEKIEELNKTREEQIQKKQKILEELQKVERELQLKTQQ 882


>gi|153791492 eukaryotic translation initiation factor 3, subunit
           C-like [Homo sapiens]
          Length = 914

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 125 KGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
           K A  T E+++   KKR  K +KK+D + K
Sbjct: 258 KKAPTTDEDKKAAEKKREDKAKKKHDRKSK 287


>gi|239755011 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
          Length = 1363

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLE-EQFQQGKLLACIASRPGQCGRA---DGYV 189
           EE++ KK ++  Q+  D + +NA+++S LE E+  + +L A + S       A      +
Sbjct: 485 EEMITKKVAQYSQQLNDLKAENARLNSKLEKEKHNKERLEAEVESLHSNLATAINEYNEI 544

Query: 190 LEGKELEFYL 199
           LE K+LE  L
Sbjct: 545 LERKDLELVL 554


>gi|239749555 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
          Length = 1366

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLE-EQFQQGKLLACIASRPGQCGRA---DGYV 189
           EE++ KK ++  Q+  D + +NA+++S LE E+  + +L A + S       A      +
Sbjct: 514 EEMITKKVAQYSQQLNDLKAENARLNSKLEKEKHNKERLEAEVESLHSNLATAINEYNEI 573

Query: 190 LEGKELEFYL 199
           LE K+LE  L
Sbjct: 574 LERKDLELVL 583


>gi|239743705 PREDICTED: ankyrin repeat domain 18B [Homo sapiens]
          Length = 1139

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)

Query: 134 EEILNKKRSKKIQKKYDERKKNAKISSLLE-EQFQQGKLLACIASRPGQCGRA---DGYV 189
           EE++ KK ++  Q+  D + +NA+++S LE E+  + +L A + S       A      +
Sbjct: 514 EEMITKKVAQYSQQLNDLKAENARLNSKLEKEKHNKERLEAEVESLHSNLATAINEYNEI 573

Query: 190 LEGKELEFYL 199
           LE K+LE  L
Sbjct: 574 LERKDLELVL 583


>gi|4506123 PRP18 pre-mRNA processing factor 18 homolog [Homo
           sapiens]
          Length = 342

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 88  NELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKKRSKKIQK 147
           +E++R + LV++  +L+++  Y               K ++L  +EEE   ++   KIQ 
Sbjct: 6   SEILRKRQLVEDRNLLVENKKYF--------------KRSELAKKEEEAYFERCGYKIQP 51

Query: 148 KYDERKKNAKISSLLEEQFQQGKL 171
           K +++K     + +LE +  + KL
Sbjct: 52  KEEDQKPLTSSNPVLELELAEEKL 75


>gi|83700233 eukaryotic translation initiation factor 3, subunit C
           [Homo sapiens]
          Length = 913

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)

Query: 125 KGAKLTPEEEEILNKKRSKKIQKKYDERKK 154
           K A  T E+++   KKR  K +KK+D + K
Sbjct: 258 KKAPTTDEDKKAAEKKREDKAKKKHDRKSK 287


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,310,023
Number of Sequences: 37866
Number of extensions: 371002
Number of successful extensions: 1799
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1743
Number of HSP's gapped (non-prelim): 78
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.