Guide to the Human Genome
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Name: RPS8 Sequence: fasta or formatted (208aa) NCBI GI: 4506743
Description:

ribosomal protein S8

Referenced in:

Ribosomes
Small RNAs in RNA Processing

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         11           2
 C cysteine            2.4          5           2
 D aspartate           2.9          6           1
 E glutamate           6.7         14           4
 F phenylalanine       1.4          3           1
 G glycine             8.2         17           2
 H histidine           1.9          4           1
 I isoleucine          5.8         12           2
 K lysine             14.9         31           2
 L leucine             8.2         17           2
 M methionine          0.5          1           1
 N asparagine          4.8         10           2
 P proline             3.4          7           1
 Q glutamine           2.9          6           2
 R arginine           11.1         23           2
 S serine              4.8         10           2
 T threonine           4.3          9           1
 V valine              4.3          9           2
 W tryptophan          1.4          3           1
 Y tyrosine            4.8         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ribosomal protein S8 
QRICH2                0.020   glutamine rich 2 
IQUB                  0.020   IQ motif and ubiquitin domain containing 
ABCC9                 0.015   ATP-binding cassette, sub-family C, member 9 isofor...
ABCC9                 0.015   ATP-binding cassette, sub-family C, member 9 isofor...
SLC5A4                0.012   solute carrier family 5 (low affinity glucose cotran...
BAZ1B                 0.012   bromodomain adjacent to zinc finger domain, 1B [Homo...
ZBTB41                0.010   zinc finger and BTB domain containing 41 
LOC100133698          0.010   PREDICTED: hypothetical protein 
DDX23                 0.010   DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 
WDR87                 0.007   NYD-SP11 protein 
RSPO2                 0.007   R-spondin family, member 2 
MYO7A                 0.007   myosin VIIA isoform 2 
MYO7A                 0.007   myosin VIIA isoform 3 
MYO7A                 0.007   myosin VIIA isoform 1 
DST                   0.007   dystonin isoform 4 
DST                   0.007   dystonin isoform 3 
DST                   0.007   dystonin isoform 2 
DST                   0.007   dystonin isoform 1 
DST                   0.007   dystonin isoform 1eA precursor 
FAM133B               0.007   hypothetical protein LOC257415 isoform 2 
FAM133B               0.007   hypothetical protein LOC257415 isoform 1 
HYDIN                 0.007   hydrocephalus inducing isoform a 
ANKRD17               0.007   ankyrin repeat domain protein 17 isoform a 
EIF3CL                0.007   eukaryotic translation initiation factor 3, subunit...
ANKRD18B              0.007   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.007   PREDICTED: ankyrin repeat domain 18B 
ANKRD18B              0.007   PREDICTED: ankyrin repeat domain 18B 
PRPF18                0.007   PRP18 pre-mRNA processing factor 18 homolog 
EIF3C                 0.007   eukaryotic translation initiation factor 3, subunit ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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