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Search of human proteins with 4506713
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|208022622 ubiquitin and ribosomal protein S27a precursor [Hom... 323 5e-89
gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo ... 323 5e-89
gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens] 193 4e-50
gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens] 193 4e-50
gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens] 193 4e-50
gi|11024714 ubiquitin B precursor [Homo sapiens] 151 2e-37
gi|67191208 ubiquitin C [Homo sapiens] 151 2e-37
gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo s... 151 2e-37
gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo ... 151 2e-37
gi|5453760 neural precursor cell expressed, developmentally down... 97 6e-21
gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens] 72 1e-13
gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens] 72 1e-13
gi|7657667 ubiquitin-like 4 [Homo sapiens] 63 1e-10
gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30... 55 3e-08
gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens] 54 5e-08
gi|4506387 UV excision repair protein RAD23 homolog B [Homo sapi... 52 2e-07
gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Hom... 52 3e-07
gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo... 52 3e-07
gi|115430235 ubiquitin-like with PHD and ring finger domains 1 i... 51 3e-07
gi|115430233 ubiquitin-like with PHD and ring finger domains 1 i... 51 3e-07
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 51 5e-07
gi|169790971 parkin isoform 2 [Homo sapiens] 50 6e-07
gi|169790969 parkin isoform 1 [Homo sapiens] 50 6e-07
gi|222352096 ubiquitin D [Homo sapiens] 50 6e-07
gi|44662819 ubiquitin-like 4B [Homo sapiens] 50 6e-07
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 49 2e-06
gi|13376439 ubiquitin domain containing 1 [Homo sapiens] 48 3e-06
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 7e-06
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 7e-06
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 47 7e-06
>gi|208022622 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 323 bits (827), Expect = 5e-89
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
Query: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Sbjct: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>gi|4506713 ubiquitin and ribosomal protein S27a precursor [Homo
sapiens]
Length = 156
Score = 323 bits (827), Expect = 5e-89
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE
Sbjct: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRE 120
Query: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK
Sbjct: 121 CPSDECGAGVFMASHFDRHYCGKCCLTYCFNKPEDK 156
>gi|239757745 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 193 bits (491), Expect = 4e-50
Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184
>gi|239752254 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 193 bits (491), Expect = 4e-50
Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184
>gi|239746765 PREDICTED: similar to hCG1790904 [Homo sapiens]
Length = 334
Score = 193 bits (491), Expect = 4e-50
Identities = 103/117 (88%), Positives = 105/117 (89%), Gaps = 1/117 (0%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+QIFVKTL GKTITLEVEPSD IENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD N
Sbjct: 69 LQIFVKTLRGKTITLEVEPSDAIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDCN 128
Query: 61 IQKESTLHLVLRLRGGAKKRKKKSYTTPKKNKHKRKKVKLAVLKYYKVDENGKISRL 117
IQKE TLHL+LRL G AKKR KKSY TPKKNKHKRKKVKL VLK YKVDEN KIS L
Sbjct: 129 IQKEPTLHLLLRLCGVAKKR-KKSYPTPKKNKHKRKKVKLDVLKCYKVDENDKISAL 184
>gi|11024714 ubiquitin B precursor [Homo sapiens]
Length = 229
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>gi|67191208 ubiquitin C [Homo sapiens]
Length = 685
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 229 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 305 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 381 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 440
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 441 IQKESTLHLVLRLRGG 456
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 457 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 516
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 517 IQKESTLHLVLRLRGG 532
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 533 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 592
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 593 IQKESTLHLVLRLRGG 608
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 609 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 668
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 669 IQKESTLHLVLRLRGG 684
Score = 148 bits (373), Expect = 2e-36
Identities = 75/76 (98%), Positives = 75/76 (98%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP DQQRLIFAGKQLEDGRTLSDYN
Sbjct: 153 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPSDQQRLIFAGKQLEDGRTLSDYN 212
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
>gi|4507761 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|77539055 ubiquitin and ribosomal protein L40 precursor [Homo
sapiens]
Length = 128
Score = 151 bits (381), Expect = 2e-37
Identities = 76/76 (100%), Positives = 76/76 (100%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 61 IQKESTLHLVLRLRGG 76
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>gi|5453760 neural precursor cell expressed, developmentally
down-regulated 8 [Homo sapiens]
Length = 81
Score = 97.1 bits (240), Expect = 6e-21
Identities = 45/81 (55%), Positives = 61/81 (75%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M I VKTLTGK I +++EP+D +E +K ++++KEGIPP QQRLI++GKQ+ D +T +DY
Sbjct: 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYK 60
Query: 61 IQKESTLHLVLRLRGGAKKRK 81
I S LHLVL LRGG R+
Sbjct: 61 ILGGSVLHLVLALRGGGGLRQ 81
>gi|190341072 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.4 bits (176), Expect = 1e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGG 76
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
>gi|190341070 AN1, ubiquitin-like, homolog [Homo sapiens]
Length = 727
Score = 72.4 bits (176), Expect = 1e-13
Identities = 37/76 (48%), Positives = 52/76 (68%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M++F++TLTG L V P +T+ +VKAKI+ EGIP +Q LI+ +LE+ L+DYN
Sbjct: 28 MELFIETLTGTCFELRVSPFETVISVKAKIRRLEGIPICRQHLIWNNMELENDYCLNDYN 87
Query: 61 IQKESTLHLVLRLRGG 76
I + TL LVL +RGG
Sbjct: 88 ISEGCTLKLVLAMRGG 103
>gi|7657667 ubiquitin-like 4 [Homo sapiens]
Length = 157
Score = 62.8 bits (151), Expect = 1e-10
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+ VK L G+ +L+V + + +K + +K +P QQRL+F GK L DG+ LSDY+
Sbjct: 1 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYS 60
Query: 61 IQKESTLHLVLR 72
I S L+LV++
Sbjct: 61 IGPNSKLNLVVK 72
>gi|4503659 ubiquitin-like protein fubi and ribosomal protein S30
precursor [Homo sapiens]
Length = 133
Score = 54.7 bits (130), Expect = 3e-08
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
MQ+FV+ + T EV +T+ +KA + EGI P+ Q ++ AG LED TL
Sbjct: 1 MQLFVRAQ--ELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCG 58
Query: 61 IQKESTLHLVLRLRGG-----AKKRKKKSYTTPKKNKHKRKKVK 99
++ +TL + R+ GG + K TPK K ++KK K
Sbjct: 59 VEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK 102
>gi|4826774 ISG15 ubiquitin-like modifier [Homo sapiens]
Length = 165
Score = 53.9 bits (128), Expect = 5e-08
Identities = 28/76 (36%), Positives = 44/76 (57%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+ I V+ G++ T EV + T+ ++K ++ EG+ D L F GK LED L +Y
Sbjct: 82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYG 141
Query: 61 IQKESTLHLVLRLRGG 76
++ ST+ + LRLRGG
Sbjct: 142 LKPLSTVFMNLRLRGG 157
>gi|4506387 UV excision repair protein RAD23 homolog B [Homo
sapiens]
Length = 409
Score = 52.0 bits (123), Expect = 2e-07
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 11/91 (12%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG---IPPDQQRLIFAGKQLEDGRTLS 57
MQ+ +KTL +T ++++P +T++ +K KI+ ++G P Q+LI+AGK L D L
Sbjct: 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK 60
Query: 58 DYNIQKESTLHLVLRLRGGAKKRKKKSYTTP 88
+Y I +++ + +++ K K+ +TP
Sbjct: 61 EYKIDEKNFVVVMV--------TKPKAVSTP 83
>gi|53831995 splicing factor 3a, subunit 1, 120kDa isoform 2 [Homo
sapiens]
Length = 728
Score = 51.6 bits (122), Expect = 3e-07
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 657 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 716
Query: 68 HLVLRLRGGAKK 79
HL L+ RGG KK
Sbjct: 717 HLALKERGGRKK 728
>gi|5032087 splicing factor 3a, subunit 1, 120kDa isoform 1 [Homo
sapiens]
Length = 793
Score = 51.6 bits (122), Expect = 3e-07
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 8 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 67
L G+ + + +D + +K KI + G+P +Q+L + G ++D +L+ YN+ + +
Sbjct: 722 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVI 781
Query: 68 HLVLRLRGGAKK 79
HL L+ RGG KK
Sbjct: 782 HLALKERGGRKK 793
>gi|115430235 ubiquitin-like with PHD and ring finger domains 1
isoform 1 [Homo sapiens]
Length = 793
Score = 51.2 bits (121), Expect = 3e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 60
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 61 YEVRLNDTIQLLVR 74
>gi|115430233 ubiquitin-like with PHD and ring finger domains 1
isoform 2 [Homo sapiens]
Length = 806
Score = 51.2 bits (121), Expect = 3e-07
Identities = 28/74 (37%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTGK-TITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G+ T T++ + +E ++ KIQ+ + P QRL + GKQ+EDG TL D
Sbjct: 14 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFD 73
Query: 59 YNIQKESTLHLVLR 72
Y ++ T+ L++R
Sbjct: 74 YEVRLNDTIQLLVR 87
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 50.8 bits (120), Expect = 5e-07
Identities = 26/69 (37%), Positives = 40/69 (57%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+Q+FVK G + + P+ I +K +I+D++G+P QQ+L F G+ L+D L Y
Sbjct: 434 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYG 493
Query: 61 IQKESTLHL 69
IQ TL L
Sbjct: 494 IQDSDTLIL 502
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 50.4 bits (119), Expect = 6e-07
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 50.4 bits (119), Expect = 6e-07
Identities = 23/72 (31%), Positives = 45/72 (62%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M +FV+ + +EV+ +I +K + ++G+P DQ R+IFAGK+L + T+ + +
Sbjct: 1 MIVFVRFNSSHGFPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELRNDWTVQNCD 60
Query: 61 IQKESTLHLVLR 72
+ ++S +H+V R
Sbjct: 61 LDQQSIVHIVQR 72
>gi|222352096 ubiquitin D [Homo sapiens]
Length = 165
Score = 50.4 bits (119), Expect = 6e-07
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 15 LEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 74
L+V S ++ VKA I+ K GI P+ Q + GK+LEDG+ ++DY I+K + L L
Sbjct: 104 LQVRRSSSVAQVKAMIETKTGIIPETQIVTCNGKRLEDGKMMADYGIRKGNLLFLACYCI 163
Query: 75 GG 76
GG
Sbjct: 164 GG 165
Score = 50.1 bits (118), Expect = 8e-07
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 3 IFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 62
+ V++ +T + P D+++ +K ++ K +P Q L+ K L+ R+LS Y I
Sbjct: 10 VHVRSEEWDLMTFDANPYDSVKKIKEHVRSKTKVPVQDQVLLLGSKILKPRRSLSSYGID 69
Query: 63 KESTLHLVLRL 73
KE T+HL L++
Sbjct: 70 KEKTIHLTLKV 80
>gi|44662819 ubiquitin-like 4B [Homo sapiens]
Length = 174
Score = 50.4 bits (119), Expect = 6e-07
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 8/128 (6%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
M + VK L G+ +L+V +++ +K + + +P +QQ L+F G+ LED + LSDY
Sbjct: 1 MFLTVKLLLGQRCSLKVSGQESVATLKRLVSRRLKVPEEQQHLLFRGQLLEDDKHLSDYC 60
Query: 61 IQKESTLHLVLR-LRGGAKKRKKKSYTTPKKN-------KHKRKKVKLAVLKYYKVDENG 112
I ++++++++ L A K + T P + KH + AVL+ + +
Sbjct: 61 IGPNASINVIMQPLEKMALKEAHQPQTQPLWHQLGLVLAKHFEPQDAKAVLQLLRQEHEE 120
Query: 113 KISRLRRE 120
++ ++ E
Sbjct: 121 RLQKISLE 128
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2
[Homo sapiens]
Length = 802
Score = 48.9 bits (115), Expect = 2e-06
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 1 MQIFVKTLTG-KTITLE-VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSD 58
M I V+T+ G KT T+E V TIE ++ ++ + P+ QRL + GKQLE+G TL D
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFD 60
Query: 59 YNIQKESTLHLVLR 72
Y++ + L++R
Sbjct: 61 YDVGLNDIIQLLVR 74
>gi|13376439 ubiquitin domain containing 1 [Homo sapiens]
Length = 227
Score = 48.1 bits (113), Expect = 3e-06
Identities = 23/67 (34%), Positives = 37/67 (55%)
Query: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 64
V+ TGK + L DT+ +K ++ +EGI P QR F+GK L D L + IQK+
Sbjct: 153 VRLSTGKDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKD 212
Query: 65 STLHLVL 71
+ +++
Sbjct: 213 FVIQVII 219
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 7e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 7e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo
sapiens]
Length = 1126
Score = 47.0 bits (110), Expect = 7e-06
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
+++ VKTL +T T V ++ K I IP ++QRLI+ G+ L+D + L +YN
Sbjct: 17 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYN 76
Query: 61 IQKESTLHLVLR 72
+ + +HLV R
Sbjct: 77 VGGK-VIHLVER 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,326,115
Number of Sequences: 37866
Number of extensions: 271527
Number of successful extensions: 1372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1237
Number of HSP's gapped (non-prelim): 116
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.