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Search of human proteins with 4506651
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506651 ribosomal protein L36a-like protein [Homo sapiens]
(106 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506651 ribosomal protein L36a-like protein [Homo sapiens] 224 9e-60
gi|10445223 ribosomal protein L36a [Homo sapiens] 223 2e-59
gi|239754295 PREDICTED: similar to ribosomal protein L36a [Homo ... 171 2e-43
gi|239748834 PREDICTED: hypothetical protein XP_002346832 [Homo ... 171 2e-43
gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo ... 129 7e-31
gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo ... 129 7e-31
gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo ... 129 7e-31
gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo ... 129 7e-31
gi|209969819 hypothetical protein LOC253143 [Homo sapiens] 29 0.72
gi|7019349 gremlin-1 precursor [Homo sapiens] 28 1.6
gi|109637791 transcription factor-like nuclear regulator [Homo s... 28 2.1
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 27 4.6
gi|38788260 bromodomain PHD finger transcription factor isoform ... 27 4.6
gi|38788274 bromodomain PHD finger transcription factor isoform ... 27 4.6
gi|7657496 RAB guanine nucleotide exchange factor (GEF) 1 [Homo ... 27 4.6
gi|40068059 CBF1 interacting corepressor [Homo sapiens] 26 6.1
gi|60097902 filaggrin [Homo sapiens] 26 6.1
gi|71999153 hypothetical protein LOC23334 [Homo sapiens] 26 6.1
gi|162417982 zinc finger protein 64 isoform d [Homo sapiens] 26 6.1
gi|71143137 high-mobility group box 3 [Homo sapiens] 26 6.1
gi|40806227 zinc finger protein 64 isoform c [Homo sapiens] 26 6.1
gi|40806223 zinc finger protein 64 isoform a [Homo sapiens] 26 6.1
gi|239754871 PREDICTED: similar to Coiled-coil domain-containing... 26 7.9
gi|239749410 PREDICTED: similar to Coiled-coil domain-containing... 26 7.9
gi|239743545 PREDICTED: hypothetical protein XP_002342885 [Homo ... 26 7.9
>gi|4506651 ribosomal protein L36a-like protein [Homo sapiens]
Length = 106
Score = 224 bits (572), Expect = 9e-60
Identities = 106/106 (100%), Positives = 106/106 (100%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
Query: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>gi|10445223 ribosomal protein L36a [Homo sapiens]
Length = 106
Score = 223 bits (569), Expect = 2e-59
Identities = 105/106 (99%), Positives = 106/106 (100%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQG+RRYDRKQSGYGGQTKPIFRKKA
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGKRRYDRKQSGYGGQTKPIFRKKA 60
Query: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF
Sbjct: 61 KTTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
>gi|239754295 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 105
Score = 171 bits (432), Expect = 2e-43
Identities = 80/105 (76%), Positives = 89/105 (84%)
Query: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAK 61
+N+PK+ +TF KK GKHQPHKV QYKKGK+SLYAQ ++ YDRKQ YGGQTKPI +KK K
Sbjct: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
Query: 62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
T KKIVLRLEC+EPNCR KRMLA K CKHFELGGDK RK QVIQF
Sbjct: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
>gi|239748834 PREDICTED: hypothetical protein XP_002346832 [Homo
sapiens]
Length = 105
Score = 171 bits (432), Expect = 2e-43
Identities = 80/105 (76%), Positives = 89/105 (84%)
Query: 2 VNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAK 61
+N+PK+ +TF KK GKHQPHKV QYKKGK+SLYAQ ++ YDRKQ YGGQTKPI +KK K
Sbjct: 1 MNIPKSHQTFYKKYGKHQPHKVIQYKKGKNSLYAQRKQHYDRKQGSYGGQTKPISQKKVK 60
Query: 62 TTKKIVLRLECVEPNCRSKRMLAIKRCKHFELGGDKKRKGQVIQF 106
T KKIVLRLEC+EPNCR KRMLA K CKHFELGGDK RK QVIQF
Sbjct: 61 TIKKIVLRLECMEPNCRCKRMLASKTCKHFELGGDKTRKDQVIQF 105
>gi|239754757 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 129 bits (323), Expect = 7e-31
Identities = 64/93 (68%), Positives = 71/93 (76%), Gaps = 9/93 (9%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSL+AQG+RRYDRKQSGYGGQTKPIFRKK
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKG 60
Query: 61 K---------TTKKIVLRLECVEPNCRSKRMLA 84
+ T + L CV+P + +LA
Sbjct: 61 QVVLADEALATVRTTEGPLACVQPPVVQQVLLA 93
>gi|239749285 PREDICTED: hypothetical protein XP_002346982 [Homo
sapiens]
Length = 348
Score = 129 bits (323), Expect = 7e-31
Identities = 64/93 (68%), Positives = 71/93 (76%), Gaps = 9/93 (9%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSL+AQG+RRYDRKQSGYGGQTKPIFRKK
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKG 60
Query: 61 K---------TTKKIVLRLECVEPNCRSKRMLA 84
+ T + L CV+P + +LA
Sbjct: 61 QVVLADEALATVRTTEGPLACVQPPVVQQVLLA 93
>gi|239743375 PREDICTED: hypothetical protein XP_002342844 [Homo
sapiens]
Length = 348
Score = 129 bits (323), Expect = 7e-31
Identities = 64/93 (68%), Positives = 71/93 (76%), Gaps = 9/93 (9%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSL+AQG+RRYDRKQSGYGGQTKPIFRKK
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKG 60
Query: 61 K---------TTKKIVLRLECVEPNCRSKRMLA 84
+ T + L CV+P + +LA
Sbjct: 61 QVVLADEALATVRTTEGPLACVQPPVVQQVLLA 93
>gi|239509069 PREDICTED: similar to ribosomal protein L36a [Homo
sapiens]
Length = 348
Score = 129 bits (323), Expect = 7e-31
Identities = 64/93 (68%), Positives = 71/93 (76%), Gaps = 9/93 (9%)
Query: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKA 60
MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSL+AQG+RRYDRKQSGYGGQTKPIFRKK
Sbjct: 1 MVNVPKTRRTFCKKCGKHQPHKVTQYKKGKDSLHAQGKRRYDRKQSGYGGQTKPIFRKKG 60
Query: 61 K---------TTKKIVLRLECVEPNCRSKRMLA 84
+ T + L CV+P + +LA
Sbjct: 61 QVVLADEALATVRTTEGPLACVQPPVVQQVLLA 93
>gi|209969819 hypothetical protein LOC253143 [Homo sapiens]
Length = 2151
Score = 29.3 bits (64), Expect = 0.72
Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 15 CGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVE 74
CG Q Q +DS RR D +G GQ A T + ++ C E
Sbjct: 1079 CGARQEKLAFQ----EDSRSTLSRRELDAAHTGTTGQDSDFPVTAASTVDFLKIKKSCEE 1134
Query: 75 PNCRSKRMLAIKRC 88
CRS + +++C
Sbjct: 1135 NVCRSLKDCEMEKC 1148
>gi|7019349 gremlin-1 precursor [Homo sapiens]
Length = 184
Score = 28.1 bits (61), Expect = 1.6
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 16/93 (17%)
Query: 8 RRTFCKKCGKHQPHKVTQYKKGKDS-------LYAQGRR----RYDRKQSGYGGQTKPIF 56
+R +CK QP K T +++G +S Y Q R+ RK+ G Q+
Sbjct: 90 KRDWCKT----QPLKQTIHEEGCNSRTIINRFCYGQCNSFYIPRHIRKEEG-SFQSCSFC 144
Query: 57 RKKAKTTKKIVLRLECVEPNCRSKRMLAIKRCK 89
+ K TT + L ++P + KR+ +K+C+
Sbjct: 145 KPKKFTTMMVTLNCPELQPPTKKKRVTRVKQCR 177
>gi|109637791 transcription factor-like nuclear regulator [Homo
sapiens]
Length = 2624
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Query: 16 GKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVE- 74
G+ Q K + GK S+ +QG+ + K S + +K K +LR+E E
Sbjct: 614 GRFQRPKPNLSRAGKKSVLSQGKTESESKNSHSKTSVEKNHVEKDKMNTLDILRMETTER 673
Query: 75 --PNCRSKRMLAIKRC 88
P + +L K C
Sbjct: 674 ENPEAETVSVLGEKNC 689
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 26.6 bits (57), Expect = 4.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 46 SGYGGQTKPIFRKKAKTTKKIV-LRLECV-EPN 76
+G G P+F KK KK+V L +EC+ EPN
Sbjct: 1994 NGVMGDGHPLFHKKKGNRKKLVELEVECMEEPN 2026
>gi|38788260 bromodomain PHD finger transcription factor isoform 2
[Homo sapiens]
Length = 2903
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 35 AQGRRRYDRKQSGYGGQTKPIFRKKAKTTKK-IVLRLECVEPNCRSKRMLAIKRCKHFEL 93
+Q R+R + K S + K + +K TKK L C P SK + RC+++
Sbjct: 2691 SQKRKREEEKDSSSKSKKKKMISTTSKETKKDTKLYCICKTPYDESKFYIGCDRCQNWYH 2750
Query: 94 G 94
G
Sbjct: 2751 G 2751
>gi|38788274 bromodomain PHD finger transcription factor isoform 1
[Homo sapiens]
Length = 2920
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 35 AQGRRRYDRKQSGYGGQTKPIFRKKAKTTKK-IVLRLECVEPNCRSKRMLAIKRCKHFEL 93
+Q R+R + K S + K + +K TKK L C P SK + RC+++
Sbjct: 2708 SQKRKREEEKDSSSKSKKKKMISTTSKETKKDTKLYCICKTPYDESKFYIGCDRCQNWYH 2767
Query: 94 G 94
G
Sbjct: 2768 G 2768
>gi|7657496 RAB guanine nucleotide exchange factor (GEF) 1 [Homo
sapiens]
Length = 491
Score = 26.6 bits (57), Expect = 4.6
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 11 FCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRK-----QSGYGGQTKPIFRKKAKTTKK 65
FC KC + + HK Q + +D A+ +R + + QS G Q+ + + K T +
Sbjct: 34 FCSKCWREEYHKARQKQIQEDWELAERLQREEEEAFASSQSSQGAQSLTFSKFEEKKTNE 93
Query: 66 IVLRLECVE 74
++ V+
Sbjct: 94 KTRKVTTVK 102
>gi|40068059 CBF1 interacting corepressor [Homo sapiens]
Length = 450
Score = 26.2 bits (56), Expect = 6.1
Identities = 15/59 (25%), Positives = 23/59 (38%)
Query: 6 KTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTK 64
+ ++ F K KH+ HK + S + +S + K I RKK K K
Sbjct: 240 RKKKKFQKSRSKHKKHKSSSSSSSSSSSSSSTETSESSSESESNNKEKKIQRKKRKKNK 298
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 26.2 bits (56), Expect = 6.1
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 16 GKHQPHKVTQYK----KGKDSLYAQGRRRYDRKQSGYGGQ 51
G H H +Q + +G+ + R+ YD++QSG G +
Sbjct: 2165 GSHHSHTTSQGRSDASRGQSGSRSASRKTYDKEQSGDGSR 2204
>gi|71999153 hypothetical protein LOC23334 [Homo sapiens]
Length = 2533
Score = 26.2 bits (56), Expect = 6.1
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 29 GKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPNCRSKRMLA 84
G DS + +RR + + G G P+F + A+ + ++++ C + S M++
Sbjct: 1596 GSDSGAQRQKRRTTQLEEGEVGTLHPVFARVAQRWMEFMVQIGCASVSRSSAHMVS 1651
>gi|162417982 zinc finger protein 64 isoform d [Homo sapiens]
Length = 645
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 57 RKKAKTTKKIVLRLECVEPNCRSKRMLAIKRC-KHFEL-GGDKKRKGQV 103
R K TT RL C P C+ K +K +H ++ GDK K +V
Sbjct: 131 RTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEV 179
>gi|71143137 high-mobility group box 3 [Homo sapiens]
Length = 200
Score = 26.2 bits (56), Expect = 6.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 4 VPKTRRTFCKKCGKHQPHKVTQYKKGKDSLYAQGRRRYDRKQSGYG 49
VP F KKC + + K D + + RYDR+ YG
Sbjct: 34 VPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVRYDREMKDYG 79
>gi|40806227 zinc finger protein 64 isoform c [Homo sapiens]
Length = 679
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 57 RKKAKTTKKIVLRLECVEPNCRSKRMLAIKRC-KHFEL-GGDKKRKGQV 103
R K TT RL C P C+ K +K +H ++ GDK K +V
Sbjct: 129 RTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEV 177
>gi|40806223 zinc finger protein 64 isoform a [Homo sapiens]
Length = 681
Score = 26.2 bits (56), Expect = 6.1
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 57 RKKAKTTKKIVLRLECVEPNCRSKRMLAIKRC-KHFEL-GGDKKRKGQV 103
R K TT RL C P C+ K +K +H ++ GDK K +V
Sbjct: 131 RTKKPTTPPAQKRLNCCYPGCQFKTAYGMKDMERHLKIHTGDKPHKCEV 179
>gi|239754871 PREDICTED: similar to Coiled-coil domain-containing
protein 144C [Homo sapiens]
Length = 264
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPN 76
+K D LY +G RK+ YG + I ++ +T K + L V N
Sbjct: 101 RKDADMLYKKGSEELKRKEEEYGKDVE-INQQLKRTLKTRAMELRTVRKN 149
>gi|239749410 PREDICTED: similar to Coiled-coil domain-containing
protein 144C [Homo sapiens]
Length = 264
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPN 76
+K D LY +G RK+ YG + I ++ +T K + L V N
Sbjct: 101 RKDADMLYKKGSEELKRKEEEYGKDVE-INQQLKRTLKTRAMELRTVRKN 149
>gi|239743545 PREDICTED: hypothetical protein XP_002342885 [Homo
sapiens]
Length = 264
Score = 25.8 bits (55), Expect = 7.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 27 KKGKDSLYAQGRRRYDRKQSGYGGQTKPIFRKKAKTTKKIVLRLECVEPN 76
+K D LY +G RK+ YG + I ++ +T K + L V N
Sbjct: 101 RKDADMLYKKGSEELKRKEEEYGKDVE-INQQLKRTLKTRAMELRTVRKN 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,099,366
Number of Sequences: 37866
Number of extensions: 155306
Number of successful extensions: 413
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 30
length of query: 106
length of database: 18,247,518
effective HSP length: 76
effective length of query: 30
effective length of database: 15,369,702
effective search space: 461091060
effective search space used: 461091060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.