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Search of human proteins with 4506339
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506339 peroxisomal biogenesis factor 19 isoform a [Homo
sapiens]
(299 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506339 peroxisomal biogenesis factor 19 isoform a [Homo sapi... 595 e-170
gi|197085595 peroxisomal biogenesis factor 19 isoform b [Homo sa... 421 e-118
gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Hom... 40 0.003
gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens] 39 0.007
gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens] 37 0.016
gi|115648142 centrosomal protein 164kDa [Homo sapiens] 37 0.028
gi|56961680 coiled-coil domain containing 147 [Homo sapiens] 36 0.047
gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho... 35 0.061
gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo s... 35 0.061
gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo... 35 0.080
gi|169215927 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|239752137 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|169215514 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo sap... 35 0.080
gi|223029410 talin 1 [Homo sapiens] 35 0.10
gi|116812573 CWC15 homolog [Homo sapiens] 35 0.10
gi|117606347 F-box protein 43 isoform a [Homo sapiens] 34 0.14
gi|117606351 F-box protein 43 isoform b [Homo sapiens] 34 0.14
gi|110611218 ribosome binding protein 1 [Homo sapiens] 34 0.18
gi|110611220 ribosome binding protein 1 [Homo sapiens] 34 0.18
gi|4757902 caltractin [Homo sapiens] 34 0.18
gi|33946313 ninein isoform 4 [Homo sapiens] 34 0.18
gi|33946321 ninein isoform 5 [Homo sapiens] 34 0.18
gi|148536871 ninein isoform 1 [Homo sapiens] 34 0.18
gi|148536869 ninein isoform 2 [Homo sapiens] 34 0.18
gi|16262452 cingulin [Homo sapiens] 33 0.23
gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens] 33 0.23
gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens] 33 0.23
gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens] 33 0.23
gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens] 33 0.23
>gi|4506339 peroxisomal biogenesis factor 19 isoform a [Homo
sapiens]
Length = 299
Score = 595 bits (1534), Expect = e-170
Identities = 299/299 (100%), Positives = 299/299 (100%)
Query: 1 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK 60
MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK
Sbjct: 1 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK 60
Query: 61 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT 120
DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT
Sbjct: 61 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT 120
Query: 121 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ 180
SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ
Sbjct: 121 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQ 180
Query: 181 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS 240
NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS
Sbjct: 181 NLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDS 240
Query: 241 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM 299
ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM
Sbjct: 241 ETTQKARFEMVLDLMQQLQDLGHPPKELAGEMPPGLNFDLDALNLSGPPGASGEQCLIM 299
>gi|197085595 peroxisomal biogenesis factor 19 isoform b [Homo
sapiens]
Length = 209
Score = 421 bits (1082), Expect = e-118
Identities = 209/209 (100%), Positives = 209/209 (100%)
Query: 91 MKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSE 150
MKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSE
Sbjct: 1 MKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSE 60
Query: 151 EELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESL 210
EELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESL
Sbjct: 61 EELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESL 120
Query: 211 PPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAG 270
PPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAG
Sbjct: 121 PPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDLGHPPKELAG 180
Query: 271 EMPPGLNFDLDALNLSGPPGASGEQCLIM 299
EMPPGLNFDLDALNLSGPPGASGEQCLIM
Sbjct: 181 EMPPGLNFDLDALNLSGPPGASGEQCLIM 209
>gi|156766068 CDC42 binding protein kinase gamma (DMPK-like) [Homo
sapiens]
Length = 1551
Score = 39.7 bits (91), Expect = 0.003
Identities = 56/244 (22%), Positives = 98/244 (40%), Gaps = 28/244 (11%)
Query: 16 RELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELF 75
RELE+L + D+ ++ + D GP SPG + L ++ +EL
Sbjct: 444 RELEQLRKEVQTLRDRLPEMLRDKASLSQTD--GPPAGSPGQDSD--LRQELDRLHRELA 499
Query: 76 DSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKET--- 132
+ QA + EL + E Q+L EA R + + + +S L+E
Sbjct: 500 EGRAGLQAQEQ------ELCRAQGQQEELLQRLQEAQEREAATASQTRALSSQLEEARAA 553
Query: 133 -------LSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSK 185
+S L++ T LQ E+ L ++ + + + P + L K
Sbjct: 554 QRELEAQVSSLSRQVTQLQGQW--EQRLEESSQAKTIHTASETNGMGPPEGGPQEAQLRK 611
Query: 186 DVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQK 245
+V +L+E E+ SHR S E + QE++ + + E+ EAE + E+ Q+
Sbjct: 612 EVA--ALREQLEQ----AHSHRPSGKEEALCQLQEENRRLSREQERLEAELAQEQESKQR 665
Query: 246 ARFE 249
E
Sbjct: 666 LEGE 669
>gi|190194412 thyroid hormone receptor interactor 11 [Homo sapiens]
Length = 1979
Score = 38.5 bits (88), Expect = 0.007
Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 12/165 (7%)
Query: 68 EKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVG----------- 116
+K+ Q L +E+ Q E ++++ + EE HL E+ ++L E R
Sbjct: 832 DKYSQALRKNEILRQTIEEKDRSLGSMKEENNHLQEELERLREEQSRTAPVADPKTLDSV 891
Query: 117 SDMTSQQEFTSCLKETLSGLAKNATDL-QNSSMSEEELTKAMEGLGMDEGDGEGNILPIM 175
+++ S+ + +KE L K+ + ++ + S+ +L ++++ + + +
Sbjct: 892 TELASEVSQLNTIKEHLEEEIKHHQKIIEDQNQSKMQLLQSLQEQKKEMDEFRYQHEQMN 951
Query: 176 QSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQE 220
+ Q L KD SL++ E+ L R+ + + + +QE
Sbjct: 952 ATHTQLFLEKDEEIKSLQKTIEQIKTQLHEERQDIQTDNSDIFQE 996
>gi|32189362 PTPRF interacting protein alpha 3 [Homo sapiens]
Length = 1194
Score = 37.4 bits (85), Expect = 0.016
Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 37/196 (18%)
Query: 80 ASQATAEFEKAMK-------ELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKET 132
+++ TAE E+A++ +L E L Q +L E G ++ +E S L+
Sbjct: 231 SNRRTAELEEALERQRAEVCQLRERLAVLCRQMSQLEEELGTAHRELGKAEEANSKLQRD 290
Query: 133 LSGLAKNATDLQN--SSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
L D++ +++ + L+ E + + + + + L SK+ LY
Sbjct: 291 LKEALAQREDMEERITTLEKRYLSAQREATSLHDANDK---------LENELASKESLYR 341
Query: 191 SLKEITEKYPEWLQSHRESLP---------PE----------QFEKYQEQHSVMCKICEQ 231
+E + + EWL ++ L PE K +E+H + Q
Sbjct: 342 QSEEKSRQLAEWLDDAKQKLQQTLQKAETLPEIEAQLAQRVAALNKAEERHGNFEERLRQ 401
Query: 232 FEAETPTDSETTQKAR 247
EA+ ++ Q+AR
Sbjct: 402 LEAQLEEKNQELQRAR 417
>gi|115648142 centrosomal protein 164kDa [Homo sapiens]
Length = 1460
Score = 36.6 bits (83), Expect = 0.028
Identities = 57/234 (24%), Positives = 98/234 (41%), Gaps = 41/234 (17%)
Query: 51 QKRSPGDTAKDALFASQEKFFQELFDSELASQATAE---FEKAMKELAEEEPHLVEQFQK 107
Q +S +D + A QE Q+L + EL SQ AE E+ +++ E+ +E +K
Sbjct: 676 QVQSSTQADEDQIRAEQEASLQKLRE-ELESQQKAERASLEQKNRQMLEQLKEEIEASEK 734
Query: 108 LSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDG 167
+AA + QQ L+E L G K A + E+E + +E L
Sbjct: 735 SEQAALNAAKEKALQQ-----LREQLEGERKEAV-----ATLEKEHSAELERLCSSLEAK 784
Query: 168 EGNILPIMQSIMQNLLSKDV--LYPSLKEITEKYPE--------------WLQSHRESLP 211
++ +Q +Q K+ L L ++ + + L+ R+ +
Sbjct: 785 HREVVSSLQKKIQEAQQKEEAQLQKCLGQVEHRVHQKSYHVAGYEHELSSLLREKRQEVE 844
Query: 212 PE---QFEKYQEQHS-VMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDL 261
E + +K +E+H VM K EQ+EAE +K R E++ L +L+ L
Sbjct: 845 GEHERRLDKMKEEHQQVMAKAREQYEAE-------ERKQRAELLGHLTGELERL 891
>gi|56961680 coiled-coil domain containing 147 [Homo sapiens]
Length = 872
Score = 35.8 bits (81), Expect = 0.047
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 17/174 (9%)
Query: 92 KELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKE----TLSGLAKNATDLQNSS 147
+E+ +E L+ + KL E+ + T QQ+ T KE +S + QN +
Sbjct: 156 EEVTKERDQLLSEVVKLRESLAQT----TEQQQETERSKEEAEHAISQFQQEIQQRQNEA 211
Query: 148 MSE----EELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYPSLKE---ITEKYP 200
E E+L K ++ + D + I + Q + ++ L LKE + E+
Sbjct: 212 SREFRKKEKLEKELKQIQADMDSRQTEIKALQQYVQKSKEELQKLEQQLKEQKILNERAA 271
Query: 201 EWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDL 254
+ L+ + + + ++ EQHS++C+ Q + + + ++ +M LD+
Sbjct: 272 KELEQFQ--MRNAKLQQENEQHSLVCEQLSQENQQKALELKAKEEEVHQMRLDI 323
>gi|195927037 DNA (cytosine-5-)-methyltransferase 1 isoform a [Homo
sapiens]
Length = 1632
Score = 35.4 bits (80), Expect = 0.061
Identities = 57/245 (23%), Positives = 95/245 (38%), Gaps = 49/245 (20%)
Query: 31 KAKPSPAP--------PSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQ 82
+A+PSP+P +T T+ A GP KR P + ++ A S E +E D + +
Sbjct: 164 RAEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERA--KSDESIKEEDKDQDEKRR 221
Query: 83 ATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSGLAKNATD 142
E+ + L EEP + G+ ++E ++ L K T
Sbjct: 222 RVTSRERVARPLPAEEPE-----------RAKSGTRTEKEEERDEKEEKRLRSQTKEPTP 270
Query: 143 LQNSSMSEEELTKAMEGLGMDEG-DGEGNILPIMQSIMQNLLSKDVLYPSLKEITEKYPE 201
Q + EE +A G+ DE DG+ +S ++L +K + EK PE
Sbjct: 271 KQ--KLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK-------RRPEEKEPE 321
Query: 202 WLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDLMQQLQDL 261
+ P EK +++ E+ TP + + AR + V++
Sbjct: 322 KVN------PQISDEKDEDEKE------EKRRKTTPKEPTEKKMARAKTVMN------SK 363
Query: 262 GHPPK 266
HPPK
Sbjct: 364 THPPK 368
>gi|30089962 CDC42-binding protein kinase alpha isoform B [Homo
sapiens]
Length = 1719
Score = 35.4 bits (80), Expect = 0.061
Identities = 44/186 (23%), Positives = 73/186 (39%), Gaps = 22/186 (11%)
Query: 61 DALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT 120
D + E QEL +E A + +A+ A ++ L EQ + S+ +
Sbjct: 608 DLVMQKVESLRQELRRTERAKKELEVHTEALAAEASKDRKLREQSEHYSKQLENELEGLK 667
Query: 121 SQQEFTS---CLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDE--------GDGEG 169
+Q S C E + K TDL+ S+ EE EG+ +E D EG
Sbjct: 668 QKQISYSPGVCSIEHQQEITKLKTDLEKKSIFYEEELSKREGIHANEIKNLKKELHDSEG 727
Query: 170 NILPIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKIC 229
L + + IM LK+ EK QS RE E ++Y+ + ++ +
Sbjct: 728 QQLALNKEIM-----------ILKDKLEKTRRESQSEREEFESEFKQQYEREKVLLTEEN 776
Query: 230 EQFEAE 235
++ +E
Sbjct: 777 KKLTSE 782
>gi|4503351 DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo
sapiens]
Length = 1616
Score = 35.0 bits (79), Expect = 0.080
Identities = 59/252 (23%), Positives = 96/252 (38%), Gaps = 49/252 (19%)
Query: 24 SALDDFDKAKPSPAP--------PSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELF 75
S D K +PSP+P +T T+ A GP KR P + ++ A S E +E
Sbjct: 141 SKSDGEAKPEPSPSPRITRKSTRQTTITSHFAKGPAKRKPQEESERA--KSDESIKEEDK 198
Query: 76 DSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETLSG 135
D + + E+ + L EEP + G+ ++E ++ L
Sbjct: 199 DQDEKRRRVTSRERVARPLPAEEPE-----------RAKSGTRTEKEEERDEKEEKRLRS 247
Query: 136 LAKNATDLQNSSMSEEELTKAMEGLGMDEG-DGEGNILPIMQSIMQNLLSKDVLYPSLKE 194
K T Q + EE +A G+ DE DG+ +S ++L +K +
Sbjct: 248 QTKEPTPKQ--KLKEEPDREARAGVQADEDEDGDEKDEKKHRSQPKDLAAK-------RR 298
Query: 195 ITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEMVLDL 254
EK PE + P EK +++ E+ TP + + AR + V++
Sbjct: 299 PEEKEPEKVN------PQISDEKDEDEKE------EKRRKTTPKEPTEKKMARAKTVMN- 345
Query: 255 MQQLQDLGHPPK 266
HPPK
Sbjct: 346 -----SKTHPPK 352
>gi|169215927 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 38 PPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEE 97
PP T A GP+ + A+ A+QE Q D+ Q E EK M+ L E
Sbjct: 23 PPIVTPASRRLGPRGGRHLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAE 82
Query: 98 EPHLVEQFQKLSE 110
L ++ Q LSE
Sbjct: 83 SESLNQRLQDLSE 95
>gi|239752137 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 38 PPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEE 97
PP T A GP+ + A+ A+QE Q D+ Q E EK M+ L E
Sbjct: 23 PPIVTPASRRLGPRGGRHLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAE 82
Query: 98 EPHLVEQFQKLSE 110
L ++ Q LSE
Sbjct: 83 SESLNQRLQDLSE 95
>gi|169215514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 357
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 38 PPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEE 97
PP T A GP+ + A+ A+QE Q D+ Q E EK M+ L E
Sbjct: 23 PPIVTPASRRLGPRGGRHLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAE 82
Query: 98 EPHLVEQFQKLSE 110
L ++ Q LSE
Sbjct: 83 SESLNQRLQDLSE 95
>gi|169215483 PREDICTED: hypothetical protein isoform 2 [Homo
sapiens]
Length = 356
Score = 35.0 bits (79), Expect = 0.080
Identities = 24/73 (32%), Positives = 32/73 (43%)
Query: 38 PPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEE 97
PP T A GP+ + A+ A+QE Q D+ Q E EK M+ L E
Sbjct: 23 PPIVTPASRRLGPRGGRHLGSVSTAMAATQELLLQLQKDNRDGRQRKQELEKLMRGLEAE 82
Query: 98 EPHLVEQFQKLSE 110
L ++ Q LSE
Sbjct: 83 SESLNQRLQDLSE 95
>gi|223029410 talin 1 [Homo sapiens]
Length = 2541
Score = 34.7 bits (78), Expect = 0.10
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 19/169 (11%)
Query: 1 MAAAEEGCSVGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAK 60
+A A EGC ++A E +LL + A+G D A
Sbjct: 743 VAKAVEGCVSASQAATEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQAT 802
Query: 61 DALFASQEKFFQELFDS-------ELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAG 113
D + E F + D+ + +QAT++ A+K AE E L E +KL AA
Sbjct: 803 DTILTVTENIFSSMGDAGEMVRQARILAQATSDLVNAIKADAEGESDL-ENSRKLLSAA- 860
Query: 114 RVGSDMTSQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGM 162
++ +D T++ + AK A +S ++ L +A EGL M
Sbjct: 861 KILADATAK----------MVEAAKGAAAHPDSEEQQQRLREAAEGLRM 899
>gi|116812573 CWC15 homolog [Homo sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.10
Identities = 32/98 (32%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 16 RELEELLESALDDFDKAKPSPAPPSTTTAPDASGP---QKRSPGDTAKDALFASQEKFFQ 72
RELEE +A + K + P TT++ + P Q + A D L +++ F+
Sbjct: 61 RELEERERAAARE--KNRDRPTREHTTSSSVSKKPRLDQIPAANLDADDPLTDEEDEDFE 118
Query: 73 ELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSE 110
E D + + AE EK KE AEE+ EQ QK E
Sbjct: 119 EESDDDDTAALLAELEKIKKERAEEQAR-KEQEQKAEE 155
>gi|117606347 F-box protein 43 isoform a [Homo sapiens]
Length = 674
Score = 34.3 bits (77), Expect = 0.14
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 34 PSPAPPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEF------ 87
PSP + + P+ SG S + ++D+L + QE FQEL + +
Sbjct: 286 PSPEVRGSISTPEDSGFNSLSL-EKSEDSL-SDQEGSFQELLQKHKGTPKVGDTIRKTRH 343
Query: 88 -----------EKAMKELAEEEPHLVE-QFQKLSEAAGRVGSDMTSQQEFTSCLKETLSG 135
E++ + EEE +V +K + AA + S E + L +L
Sbjct: 344 LGRSRRLSTLREQSSQSETEEEKQIVHPDSEKRAAAASAISEGQLSSDE-SGDLTFSLKN 402
Query: 136 LAKN-ATDLQNSSMSEEELTKAMEGLG---MDEGDGEGNILPIMQSIMQNLLSKDVLYPS 191
L+K A L + + + + E G +++GDGE + ++Q I+ L+ K +
Sbjct: 403 LSKTPALQLVHELFMKSKRKRLQENSGHEFLEQGDGEK--IAVLQCILAGLIGKKMGIEK 460
Query: 192 LKEITE 197
L +TE
Sbjct: 461 LDILTE 466
>gi|117606351 F-box protein 43 isoform b [Homo sapiens]
Length = 708
Score = 34.3 bits (77), Expect = 0.14
Identities = 44/186 (23%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 34 PSPAPPSTTTAPDASGPQKRSPGDTAKDALFASQEKFFQELFDSELASQATAEF------ 87
PSP + + P+ SG S + ++D+L + QE FQEL + +
Sbjct: 320 PSPEVRGSISTPEDSGFNSLSL-EKSEDSL-SDQEGSFQELLQKHKGTPKVGDTIRKTRH 377
Query: 88 -----------EKAMKELAEEEPHLVE-QFQKLSEAAGRVGSDMTSQQEFTSCLKETLSG 135
E++ + EEE +V +K + AA + S E + L +L
Sbjct: 378 LGRSRRLSTLREQSSQSETEEEKQIVHPDSEKRAAAASAISEGQLSSDE-SGDLTFSLKN 436
Query: 136 LAKN-ATDLQNSSMSEEELTKAMEGLG---MDEGDGEGNILPIMQSIMQNLLSKDVLYPS 191
L+K A L + + + + E G +++GDGE + ++Q I+ L+ K +
Sbjct: 437 LSKTPALQLVHELFMKSKRKRLQENSGHEFLEQGDGEK--IAVLQCILAGLIGKKMGIEK 494
Query: 192 LKEITE 197
L +TE
Sbjct: 495 LDILTE 500
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 78 ELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCL-------K 130
EL+ A + + +++L E+ P L++ +E + + S + +E S L +
Sbjct: 640 ELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYR 699
Query: 131 ETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
L+ DLQ S EE++ +A G +E + ++ I++ L +
Sbjct: 700 SILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSD 759
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
++E T L+ H + E + Y ++ + + ++ + +++ QK E+
Sbjct: 760 QVREHTSHLEAELEKHMAAASAE-CQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDEL 818
Query: 251 VLDLMQQLQDL 261
L + QQL ++
Sbjct: 819 AL-VRQQLSEM 828
Score = 31.6 bits (70), Expect = 0.89
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 12 AEADRELEEL---------LESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAKDA 62
+EA ++ +EL ++S ++D D A AP S+ AP P ++ P
Sbjct: 809 SEAQKQSDELALVRQQLSEMKSHVEDGDIAG---APASSPEAP----PAEQDP------V 855
Query: 63 LFASQEKFFQELFDSELASQA--TAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT 120
+Q ++ + + + E + TAEFE+A L E+ +KL A G +
Sbjct: 856 QLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACR----LQEELEKLRTA----GPLES 907
Query: 121 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAME 158
S+ E S LKE L K +DL ++ +EL K +
Sbjct: 908 SETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQ 945
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 33.9 bits (76), Expect = 0.18
Identities = 37/191 (19%), Positives = 82/191 (42%), Gaps = 9/191 (4%)
Query: 78 ELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCL-------K 130
EL+ A + + +++L E+ P L++ +E + + S + +E S L +
Sbjct: 640 ELSVLAQQNYTEWLQDLKEKGPTLLKHPPAPAEPSSDLASKLREAEETQSTLQAECDQYR 699
Query: 131 ETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
L+ DLQ S EE++ +A G +E + ++ I++ L +
Sbjct: 700 SILAETEGMLRDLQKSVEEEEQVWRAKVGAAEEELQKSRVTVKHLEEIVEKLKGELESSD 759
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
++E T L+ H + E + Y ++ + + ++ + +++ QK E+
Sbjct: 760 QVREHTSHLEAELEKHMAAASAE-CQNYAKEVAGLRQLLLESQSQLDAAKSEAQKQSDEL 818
Query: 251 VLDLMQQLQDL 261
L + QQL ++
Sbjct: 819 AL-VRQQLSEM 828
Score = 31.6 bits (70), Expect = 0.89
Identities = 42/158 (26%), Positives = 70/158 (44%), Gaps = 32/158 (20%)
Query: 12 AEADRELEEL---------LESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPGDTAKDA 62
+EA ++ +EL ++S ++D D A AP S+ AP P ++ P
Sbjct: 809 SEAQKQSDELALVRQQLSEMKSHVEDGDIAG---APASSPEAP----PAEQDP------V 855
Query: 63 LFASQEKFFQELFDSELASQA--TAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMT 120
+Q ++ + + + E + TAEFE+A L E+ +KL A G +
Sbjct: 856 QLKTQLEWTEAILEDEQTQRQKLTAEFEEAQTSACR----LQEELEKLRTA----GPLES 907
Query: 121 SQQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAME 158
S+ E S LKE L K +DL ++ +EL K +
Sbjct: 908 SETEEASQLKERLEKEKKLTSDLGRAATRLQELLKTTQ 945
>gi|4757902 caltractin [Homo sapiens]
Length = 172
Score = 33.9 bits (76), Expect = 0.18
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 51 QKRSPGDTAKDALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSE 110
QK S DT ++ L K F+ D E + ++ KEL E E+ Q++ +
Sbjct: 95 QKMSEKDTKEEIL-----KAFKLFDDDETGKISFKNLKRVAKELGENLTD--EELQEMID 147
Query: 111 AAGRVGSDMTSQQEFTSCLKET 132
A R G S+QEF +K+T
Sbjct: 148 EADRDGDGEVSEQEFLRIMKKT 169
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 78 ELASQATAEFEKAMKELA----EEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETL 133
E +AT E+ K+L EE+ HL E+ + + + E + L +
Sbjct: 694 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLR------------LQHEMELKARLTQAQ 741
Query: 134 SGLAKNATDLQNSSMSEEE---LTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
+ + LQ+S+ +EE+ LT+ +E ++ + + ++ L K+ L
Sbjct: 742 ASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQ---------LTSLVEKHTLEKEELR- 791
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
KE+ EK+ LQ RE + E + + I QF+++ +E + A +
Sbjct: 792 --KELLEKHQRELQEGREKMETECNRRTSQ-------IEAQFQSDCQKVTERCESALQSL 842
Query: 251 VLDLMQQLQDLGHPPKE 267
Q+L+DL +E
Sbjct: 843 EGRYRQELKDLQEQQRE 859
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 42/262 (16%)
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFT 126
QE+ E + L SQ A EK +L + Q ++ R+ SD+ Q+
Sbjct: 1751 QEQKSWEHQSASLKSQLVASQEKVQ--------NLEDTVQNVNLQMSRMKSDLRVTQQEK 1802
Query: 127 SCLKETLSGLAKNATDLQNSSMSEEELT------KAMEGLGMDEGD----GEGNIL---- 172
LK+ + L K + S + E T + L D+ D E +L
Sbjct: 1803 EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQEN 1862
Query: 173 PIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCK-ICEQ 231
+Q+++QN +K L S +++ + L H++ L P EQ + K C+Q
Sbjct: 1863 ERLQTMVQN--TKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQ 1920
Query: 232 FEAE-TPTDSETTQKARFEMVLD---------------LMQQLQDLGHPPKELAGEMPPG 275
F+ E +P + + +Q E L+ L +QL ++ H + A P
Sbjct: 1921 FQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQH-LRSTATPSPSP 1979
Query: 276 LNFDLDALNLSGPPGASGEQCL 297
+DL L P EQ L
Sbjct: 1980 HAWDLQLLQQQACPMVPREQFL 2001
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 78 ELASQATAEFEKAMKELA----EEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETL 133
E +AT E+ K+L EE+ HL E+ + + + E + L +
Sbjct: 688 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLR------------LQHEMELKARLTQAQ 735
Query: 134 SGLAKNATDLQNSSMSEEE---LTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
+ + LQ+S+ +EE+ LT+ +E ++ + + ++ L K+ L
Sbjct: 736 ASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQ---------LTSLVEKHTLEKEELR- 785
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
KE+ EK+ LQ RE + E + + I QF+++ +E + A +
Sbjct: 786 --KELLEKHQRELQEGREKMETECNRRTSQ-------IEAQFQSDCQKVTERCESALQSL 836
Query: 251 VLDLMQQLQDLGHPPKE 267
Q+L+DL +E
Sbjct: 837 EGRYRQELKDLQEQQRE 853
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 42/262 (16%)
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFT 126
QE+ E + L SQ A EK +L + Q ++ R+ SD+ Q+
Sbjct: 1745 QEQKSWEHQSASLKSQLVASQEKVQ--------NLEDTVQNVNLQMSRMKSDLRVTQQEK 1796
Query: 127 SCLKETLSGLAKNATDLQNSSMSEEELT------KAMEGLGMDEGD----GEGNIL---- 172
LK+ + L K + S + E T + L D+ D E +L
Sbjct: 1797 EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQEN 1856
Query: 173 PIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCK-ICEQ 231
+Q+++QN +K L S +++ + L H++ L P EQ + K C+Q
Sbjct: 1857 ERLQTMVQN--TKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQ 1914
Query: 232 FEAE-TPTDSETTQKARFEMVLD---------------LMQQLQDLGHPPKELAGEMPPG 275
F+ E +P + + +Q E L+ L +QL ++ H + A P
Sbjct: 1915 FQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQH-LRSTATPSPSP 1973
Query: 276 LNFDLDALNLSGPPGASGEQCL 297
+DL L P EQ L
Sbjct: 1974 HAWDLQLLQQQACPMVPREQFL 1995
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 78 ELASQATAEFEKAMKELA----EEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETL 133
E +AT E+ K+L EE+ HL E+ + + + E + L +
Sbjct: 688 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLR------------LQHEMELKARLTQAQ 735
Query: 134 SGLAKNATDLQNSSMSEEE---LTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
+ + LQ+S+ +EE+ LT+ +E ++ + + ++ L K+ L
Sbjct: 736 ASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQ---------LTSLVEKHTLEKEELR- 785
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
KE+ EK+ LQ RE + E + + I QF+++ +E + A +
Sbjct: 786 --KELLEKHQRELQEGREKMETECNRRTSQ-------IEAQFQSDCQKVTERCESALQSL 836
Query: 251 VLDLMQQLQDLGHPPKE 267
Q+L+DL +E
Sbjct: 837 EGRYRQELKDLQEQQRE 853
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 42/262 (16%)
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFT 126
QE+ E + L SQ A EK +L + Q ++ R+ SD+ Q+
Sbjct: 1745 QEQKSWEHQSASLKSQLVASQEKVQ--------NLEDTVQNVNLQMSRMKSDLRVTQQEK 1796
Query: 127 SCLKETLSGLAKNATDLQNSSMSEEELT------KAMEGLGMDEGD----GEGNIL---- 172
LK+ + L K + S + E T + L D+ D E +L
Sbjct: 1797 EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQEN 1856
Query: 173 PIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCK-ICEQ 231
+Q+++QN +K L S +++ + L H++ L P EQ + K C+Q
Sbjct: 1857 ERLQTMVQN--TKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQ 1914
Query: 232 FEAE-TPTDSETTQKARFEMVLD---------------LMQQLQDLGHPPKELAGEMPPG 275
F+ E +P + + +Q E L+ L +QL ++ H + A P
Sbjct: 1915 FQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQH-LRSTATPSPSP 1973
Query: 276 LNFDLDALNLSGPPGASGEQCL 297
+DL L P EQ L
Sbjct: 1974 HAWDLQLLQQQACPMVPREQFL 1995
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 33.9 bits (76), Expect = 0.18
Identities = 43/197 (21%), Positives = 82/197 (41%), Gaps = 38/197 (19%)
Query: 78 ELASQATAEFEKAMKELA----EEEPHLVEQFQKLSEAAGRVGSDMTSQQEFTSCLKETL 133
E +AT E+ K+L EE+ HL E+ + + + E + L +
Sbjct: 688 EAHHEATCRHEEEKKQLQVKLEEEKTHLQEKLR------------LQHEMELKARLTQAQ 735
Query: 134 SGLAKNATDLQNSSMSEEE---LTKAMEGLGMDEGDGEGNILPIMQSIMQNLLSKDVLYP 190
+ + LQ+S+ +EE+ LT+ +E ++ + + ++ L K+ L
Sbjct: 736 ASFEREREGLQSSAWTEEKVRGLTQELEQFHQEQ---------LTSLVEKHTLEKEELR- 785
Query: 191 SLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQKARFEM 250
KE+ EK+ LQ RE + E + + I QF+++ +E + A +
Sbjct: 786 --KELLEKHQRELQEGREKMETECNRRTSQ-------IEAQFQSDCQKVTERCESALQSL 836
Query: 251 VLDLMQQLQDLGHPPKE 267
Q+L+DL +E
Sbjct: 837 EGRYRQELKDLQEQQRE 853
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 42/262 (16%)
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTSQQEFT 126
QE+ E + L SQ A EK +L + Q ++ R+ SD+ Q+
Sbjct: 1745 QEQKSWEHQSASLKSQLVASQEKVQ--------NLEDTVQNVNLQMSRMKSDLRVTQQEK 1796
Query: 127 SCLKETLSGLAKNATDLQNSSMSEEELT------KAMEGLGMDEGD----GEGNIL---- 172
LK+ + L K + S + E T + L D+ D E +L
Sbjct: 1797 EALKQEVMSLHKQLQNAGGKSWAPEIATHPSGLHNQQKRLSWDKLDHLMNEEQQLLWQEN 1856
Query: 173 PIMQSIMQNLLSKDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCK-ICEQ 231
+Q+++QN +K L S +++ + L H++ L P EQ + K C+Q
Sbjct: 1857 ERLQTMVQN--TKAELTHSREKVRQLESNLLPKHQKHLNPSGTMNPTEQEKLSLKRECDQ 1914
Query: 232 FEAE-TPTDSETTQKARFEMVLD---------------LMQQLQDLGHPPKELAGEMPPG 275
F+ E +P + + +Q E L+ L +QL ++ H + A P
Sbjct: 1915 FQKEQSPANRKVSQMNSLEQELETIHLENEGLKKKQVKLDEQLMEMQH-LRSTATPSPSP 1973
Query: 276 LNFDLDALNLSGPPGASGEQCL 297
+DL L P EQ L
Sbjct: 1974 HAWDLQLLQQQACPMVPREQFL 1995
>gi|16262452 cingulin [Homo sapiens]
Length = 1203
Score = 33.5 bits (75), Expect = 0.23
Identities = 31/157 (19%), Positives = 59/157 (37%), Gaps = 8/157 (5%)
Query: 10 VGAEADRELEELLESALDDFDKAKPSPAPPSTTTAPDASGPQKRSPG--------DTAKD 61
+G ++ + L++L D +KA+ A AS +K S G +
Sbjct: 861 IGEDSKQALQQLQAQLEDYKEKARREVADAQRQAKDWASEAEKTSGGLSRLQDEIQRLRQ 920
Query: 62 ALFASQEKFFQELFDSELASQATAEFEKAMKELAEEEPHLVEQFQKLSEAAGRVGSDMTS 121
AL ASQ + D EL +Q E+ + + Q + L E R+ +++
Sbjct: 921 ALQASQAERDTARLDKELLAQRLQGLEQEAENKKRSQDDRARQLKGLEEKVSRLETELDE 980
Query: 122 QQEFTSCLKETLSGLAKNATDLQNSSMSEEELTKAME 158
++ L + ++ L+ M E + +E
Sbjct: 981 EKNTVELLTDRVNRGRDQVDQLRTELMQERSARQDLE 1017
>gi|224809478 retinoic acid induced 14 isoform d [Homo sapiens]
Length = 983
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 24/281 (8%)
Query: 12 AEADRELEELLESALDDFDKAKPSPAPPSTTTAPDA-SGPQ----KRSPGDTAKDALFAS 66
AEAD + + D PS P T+ PD+ S P T D
Sbjct: 381 AEADLSFDSYHSTQTD----LGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 436
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLV-EQFQKLSEAAGRVGSDMT-SQQE 124
++ Q+L + + AE ++ EL LV ++SE + + + +Q +
Sbjct: 437 LQEILQDL--QKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQSK 494
Query: 125 FTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLS 184
+ +KE LS + L +S E + + + E N+L Q + L
Sbjct: 495 YEEAMKEVLSVQKQMKLGL----VSPESMDNYSHFHELRVTEEEINVLK--QDLQNALEE 548
Query: 185 KDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQ 244
+ ++E+ EK E + ++ E+Y+E S C + E E E Q
Sbjct: 549 SERNKEKVRELEEKLVE---REKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQ 605
Query: 245 KARFEMVLDLMQQLQ-DLGHPPKELAGEMPPGLNFDLDALN 284
+A+ E ++ L L+ + + A +M +N +D LN
Sbjct: 606 EAQ-EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELN 645
>gi|224809476 retinoic acid induced 14 isoform c [Homo sapiens]
Length = 972
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 24/281 (8%)
Query: 12 AEADRELEELLESALDDFDKAKPSPAPPSTTTAPDA-SGPQ----KRSPGDTAKDALFAS 66
AEAD + + D PS P T+ PD+ S P T D
Sbjct: 370 AEADLSFDSYHSTQTD----LGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 425
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLV-EQFQKLSEAAGRVGSDMT-SQQE 124
++ Q+L + + AE ++ EL LV ++SE + + + +Q +
Sbjct: 426 LQEILQDL--QKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQSK 483
Query: 125 FTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLS 184
+ +KE LS + L +S E + + + E N+L Q + L
Sbjct: 484 YEEAMKEVLSVQKQMKLGL----VSPESMDNYSHFHELRVTEEEINVLK--QDLQNALEE 537
Query: 185 KDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQ 244
+ ++E+ EK E + ++ E+Y+E S C + E E E Q
Sbjct: 538 SERNKEKVRELEEKLVE---REKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQ 594
Query: 245 KARFEMVLDLMQQLQ-DLGHPPKELAGEMPPGLNFDLDALN 284
+A+ E ++ L L+ + + A +M +N +D LN
Sbjct: 595 EAQ-EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELN 634
>gi|224809474 retinoic acid induced 14 isoform b [Homo sapiens]
Length = 951
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 24/281 (8%)
Query: 12 AEADRELEELLESALDDFDKAKPSPAPPSTTTAPDA-SGPQ----KRSPGDTAKDALFAS 66
AEAD + + D PS P T+ PD+ S P T D
Sbjct: 349 AEADLSFDSYHSTQTD----LGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 404
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLV-EQFQKLSEAAGRVGSDMT-SQQE 124
++ Q+L + + AE ++ EL LV ++SE + + + +Q +
Sbjct: 405 LQEILQDL--QKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQSK 462
Query: 125 FTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLS 184
+ +KE LS + L +S E + + + E N+L Q + L
Sbjct: 463 YEEAMKEVLSVQKQMKLGL----VSPESMDNYSHFHELRVTEEEINVLK--QDLQNALEE 516
Query: 185 KDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQ 244
+ ++E+ EK E + ++ E+Y+E S C + E E E Q
Sbjct: 517 SERNKEKVRELEEKLVE---REKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQ 573
Query: 245 KARFEMVLDLMQQLQ-DLGHPPKELAGEMPPGLNFDLDALN 284
+A+ E ++ L L+ + + A +M +N +D LN
Sbjct: 574 EAQ-EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELN 613
>gi|224809472 retinoic acid induced 14 isoform a [Homo sapiens]
Length = 980
Score = 33.5 bits (75), Expect = 0.23
Identities = 61/281 (21%), Positives = 108/281 (38%), Gaps = 24/281 (8%)
Query: 12 AEADRELEELLESALDDFDKAKPSPAPPSTTTAPDA-SGPQ----KRSPGDTAKDALFAS 66
AEAD + + D PS P T+ PD+ S P T D
Sbjct: 378 AEADLSFDSYHSTQTD----LGPSLGKPGETSPPDSKSSPSVLIHSLGKSTTDNDVRIQQ 433
Query: 67 QEKFFQELFDSELASQATAEFEKAMKELAEEEPHLV-EQFQKLSEAAGRVGSDMT-SQQE 124
++ Q+L + + AE ++ EL LV ++SE + + + +Q +
Sbjct: 434 LQEILQDL--QKRLESSEAERKQLQVELQSRRAELVCLNNTEISENSSDLSQKLKETQSK 491
Query: 125 FTSCLKETLSGLAKNATDLQNSSMSEEELTKAMEGLGMDEGDGEGNILPIMQSIMQNLLS 184
+ +KE LS + L +S E + + + E N+L Q + L
Sbjct: 492 YEEAMKEVLSVQKQMKLGL----VSPESMDNYSHFHELRVTEEEINVLK--QDLQNALEE 545
Query: 185 KDVLYPSLKEITEKYPEWLQSHRESLPPEQFEKYQEQHSVMCKICEQFEAETPTDSETTQ 244
+ ++E+ EK E + ++ E+Y+E S C + E E E Q
Sbjct: 546 SERNKEKVRELEEKLVE---REKGTVIKPPVEEYEEMKSSYCSVIENMNKEKAFLFEKYQ 602
Query: 245 KARFEMVLDLMQQLQ-DLGHPPKELAGEMPPGLNFDLDALN 284
+A+ E ++ L L+ + + A +M +N +D LN
Sbjct: 603 EAQ-EEIMKLKDTLKSQMTQEASDEAEDMKEAMNRMIDELN 642
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.308 0.126 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,780,684
Number of Sequences: 37866
Number of extensions: 604058
Number of successful extensions: 3689
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 213
Number of HSP's that attempted gapping in prelim test: 3497
Number of HSP's gapped (non-prelim): 418
length of query: 299
length of database: 18,247,518
effective HSP length: 102
effective length of query: 197
effective length of database: 14,385,186
effective search space: 2833881642
effective search space used: 2833881642
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.