Guide to the Human Genome
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Name: PEX19 Sequence: fasta or formatted (299aa) NCBI GI: 4506339
Description:

peroxisomal biogenesis factor 19 isoform a

Referenced in:

Peroxisomes

Other entries for this name:
alt prot [209aa] peroxisomal biogenesis factor 19 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         28           3
 C cysteine            1.7          5           1
 D aspartate           6.0         18           2
 E glutamate          13.7         41           3
 F phenylalanine       4.0         12           2
 G glycine             6.0         18           1
 H histidine           1.3          4           1
 I isoleucine          2.0          6           1
 K lysine              6.0         18           1
 L leucine            11.0         33           2
 M methionine          4.3         13           1
 N asparagine          2.0          6           1
 P proline             6.7         20           2
 Q glutamine           7.0         21           2
 R arginine            1.7          5           1
 S serine              8.7         26           2
 T threonine           5.0         15           3
 V valine              2.0          6           1
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   peroxisomal biogenesis factor 19 isoform a 
PEX19                 0.695   peroxisomal biogenesis factor 19 isoform b 
CDC42BPG              0.026   CDC42 binding protein kinase gamma (DMPK-like) [Hom...
TRIP11                0.025   thyroid hormone receptor interactor 11 
PPFIA3                0.021   PTPRF interacting protein alpha 3 
CEP164                0.021   centrosomal protein 164kDa 
CCDC147               0.019   coiled-coil domain containing 147 
DNMT1                 0.018   DNA (cytosine-5-)-methyltransferase 1 isoform a [Ho...
CDC42BPA              0.018   CDC42-binding protein kinase alpha isoform B 
DNMT1                 0.018   DNA (cytosine-5-)-methyltransferase 1 isoform b [Homo...
TMEM191C              0.018   PREDICTED: hypothetical protein 
TMEM191C              0.018   PREDICTED: hypothetical protein 
TMEM191C              0.018   PREDICTED: hypothetical protein 
TMEM191B              0.018   PREDICTED: hypothetical protein isoform 2 
TLN1                  0.018   talin 1 
CWC15                 0.018   CWC15 homolog 
FBXO43                0.016   F-box protein 43 isoform a 
FBXO43                0.016   F-box protein 43 isoform b 
RRBP1                 0.016   ribosome binding protein 1 
RRBP1                 0.016   ribosome binding protein 1 
CETN2                 0.016   caltractin 
NIN                   0.016   ninein isoform 4 
NIN                   0.016   ninein isoform 5 
NIN                   0.016   ninein isoform 1 
NIN                   0.016   ninein isoform 2 
CGN                   0.014   cingulin 
RAI14                 0.014   retinoic acid induced 14 isoform d 
RAI14                 0.014   retinoic acid induced 14 isoform c 
RAI14                 0.014   retinoic acid induced 14 isoform b 
RAI14                 0.014   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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