Guide to the Human Genome
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Search of human proteins with 4505681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4505681 platelet-derived growth factor beta isoform 1
preproprotein [Homo sapiens]
         (241 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4505681 platelet-derived growth factor beta isoform 1 preprop...   494   e-140
gi|15451786 platelet-derived growth factor beta isoform 2 prepro...   449   e-126
gi|15208656 platelet-derived growth factor alpha isoform 2 prepr...   147   1e-35
gi|77695917 platelet-derived growth factor alpha isoform 1 prepr...   147   1e-35
gi|4507887 vascular endothelial growth factor B [Homo sapiens]         52   4e-07
gi|4758378 vascular endothelial growth factor D preproprotein [H...    51   8e-07
gi|4885653 vascular endothelial growth factor C preproprotein [H...    51   1e-06
gi|20149543 placental growth factor, vascular endothelial growth...    46   3e-05
gi|76781482 vascular endothelial growth factor A isoform c precu...    43   2e-04
gi|76781481 vascular endothelial growth factor A isoform b precu...    43   2e-04
gi|76781480 vascular endothelial growth factor A isoform a precu...    43   2e-04
gi|76781484 vascular endothelial growth factor A isoform e precu...    42   4e-04
gi|76781483 vascular endothelial growth factor A isoform d precu...    42   4e-04
gi|76781487 vascular endothelial growth factor A isoform g precu...    42   4e-04
gi|76781485 vascular endothelial growth factor A isoform f precu...    42   5e-04
gi|9994187 platelet-derived growth factor C precursor [Homo sapi...    39   0.004
gi|13376808 platelet derived growth factor D isoform 1 precursor...    30   1.4  
gi|15451921 platelet derived growth factor D isoform 2 precursor...    30   1.4  
gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo...    29   4.2  
gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo ...    29   4.2  
gi|219803946 within bgcn homolog isoform 2 [Homo sapiens]              29   4.2  
gi|14150139 within bgcn homolog isoform 1 [Homo sapiens]               29   4.2  
gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]         29   4.2  
gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]       28   5.5  
gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]       28   5.5  
gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]        28   5.5  
gi|207452735 epiplakin 1 [Homo sapiens]                                28   7.1  
gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens]                   28   7.1  
gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens]                   28   7.1  
gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens]                   28   7.1  

>gi|4505681 platelet-derived growth factor beta isoform 1
           preproprotein [Homo sapiens]
          Length = 241

 Score =  494 bits (1271), Expect = e-140
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL 60
           MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL
Sbjct: 1   MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL 60

Query: 61  DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV 120
           DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV
Sbjct: 61  DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV 120

Query: 121 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC 180
           WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC
Sbjct: 121 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC 180

Query: 181 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG 240
           ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG
Sbjct: 181 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG 240

Query: 241 A 241
           A
Sbjct: 241 A 241


>gi|15451786 platelet-derived growth factor beta isoform 2
           preproprotein [Homo sapiens]
          Length = 226

 Score =  449 bits (1154), Expect = e-126
 Identities = 220/220 (100%), Positives = 220/220 (100%)

Query: 22  GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 81
           GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR
Sbjct: 7   GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 66

Query: 82  SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 141
           SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC
Sbjct: 67  SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 126

Query: 142 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 201
           RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA
Sbjct: 127 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 186

Query: 202 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 241
           KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA
Sbjct: 187 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 226


>gi|15208656 platelet-derived growth factor alpha isoform 2
           preproprotein [Homo sapiens]
          Length = 196

 Score =  147 bits (370), Expect = 1e-35
 Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 11/183 (6%)

Query: 7   LFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMT 65
           L L  C YL  V AE   IP E+ E L+   I S  DLQRLL  D  G ED  +  L   
Sbjct: 7   LLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAH 66

Query: 66  RSHSGGELESLA----RGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW 121
             H+   +        R +RS+      E A+ A CKTRT ++EI R  +D T+ANFL+W
Sbjct: 67  GVHATKHVPEKRPLPIRRKRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW 120

Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181
           PPCVEV+RC+GCCN  +V+C+P++V  R V+V K+E VRKKP  K+  V LE+HL C C 
Sbjct: 121 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA 180

Query: 182 TVA 184
           T +
Sbjct: 181 TTS 183


>gi|77695917 platelet-derived growth factor alpha isoform 1
           preproprotein [Homo sapiens]
          Length = 211

 Score =  147 bits (370), Expect = 1e-35
 Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 11/183 (6%)

Query: 7   LFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMT 65
           L L  C YL  V AE   IP E+ E L+   I S  DLQRLL  D  G ED  +  L   
Sbjct: 7   LLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAH 66

Query: 66  RSHSGGELESLA----RGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW 121
             H+   +        R +RS+      E A+ A CKTRT ++EI R  +D T+ANFL+W
Sbjct: 67  GVHATKHVPEKRPLPIRRKRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW 120

Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181
           PPCVEV+RC+GCCN  +V+C+P++V  R V+V K+E VRKKP  K+  V LE+HL C C 
Sbjct: 121 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA 180

Query: 182 TVA 184
           T +
Sbjct: 181 TTS 183


>gi|4507887 vascular endothelial growth factor B [Homo sapiens]
          Length = 207

 Score = 52.4 bits (124), Expect = 4e-07
 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%)

Query: 95  AECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVR 154
           A C+ R  V  ++  L+  T A  LV P CV VQRC GCC +  ++C PT       QVR
Sbjct: 45  ATCQPREVVVPLTVELMG-TVAKQLV-PSCVTVQRCGGCCPDDGLECVPTGQH----QVR 98

Query: 155 KIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTV 213
              ++ + P  +   ++LE+H  C+C      RP  +     +  RA TP  R   R+V
Sbjct: 99  MQILMIRYPSSQLGEMSLEEHSQCEC------RP-KKKDSAVKPDRAATPHHRPQPRSV 150


>gi|4758378 vascular endothelial growth factor D preproprotein [Homo
           sapiens]
          Length = 354

 Score = 51.2 bits (121), Expect = 8e-07
 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%)

Query: 96  ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 155
           +C  R    E++  L   TN  F   PPCV V RC GCCN  ++ C  T       Q+ +
Sbjct: 110 QCSPRETCVEVASELGKSTNTFFK--PPCVNVFRCGGCCNEESLICMNTSTSYISKQLFE 167

Query: 156 IEIVRKKPIFKKATVTLEDHLACKCETVAAARP 188
           I  V    + +   V + +H  CKC   A   P
Sbjct: 168 IS-VPLTSVPELVPVKVANHTGCKCLPTAPRHP 199


>gi|4885653 vascular endothelial growth factor C preproprotein [Homo
           sapiens]
          Length = 419

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%)

Query: 96  ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 155
           +C  R    ++ +     TN  F   PPCV V RC GCCN+  +QC  T        + +
Sbjct: 130 QCMPREVCIDVGKEFGVATNTFFK--PPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFE 187

Query: 156 IEI-VRKKPIFKKATVTLEDHLACKC 180
           I + + + P  K  T++  +H +C+C
Sbjct: 188 ITVPLSQGP--KPVTISFANHTSCRC 211


>gi|20149543 placental growth factor, vascular endothelial growth
           factor-related protein [Homo sapiens]
          Length = 170

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181
           P CV + RC+GCC + N+ C P +     +Q+ KI     +P +    +T   H+ C+C 
Sbjct: 75  PSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIR-SGDRPSY--VELTFSQHVRCECR 131

Query: 182 TV-AAARPVTRSPGGSQEQR 200
            +    +P  R P G  ++R
Sbjct: 132 PLREKMKPERRRPKGRGKRR 151


>gi|76781482 vascular endothelial growth factor A isoform c
           precursor [Homo sapiens]
          Length = 389

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781481 vascular endothelial growth factor A isoform b
           precursor [Homo sapiens]
          Length = 395

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781480 vascular endothelial growth factor A isoform a
           precursor [Homo sapiens]
          Length = 412

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202
           C+C    +     +   R  G  Q+++ K
Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336


>gi|76781484 vascular endothelial growth factor A isoform e
           precursor [Homo sapiens]
          Length = 354

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781483 vascular endothelial growth factor A isoform d
           precursor [Homo sapiens]
          Length = 371

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781487 vascular endothelial growth factor A isoform g
           precursor [Homo sapiens]
          Length = 371

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202
           C+C      R    +P G   +R K
Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331


>gi|76781485 vascular endothelial growth factor A isoform f
           precursor [Homo sapiens]
          Length = 327

 Score = 42.0 bits (97), Expect = 5e-04
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177
           ++  P CV + RC GCCN+  ++C PT+     +Q+ +I+  + + I     ++   H  
Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307

Query: 178 CKC 180
           C+C
Sbjct: 308 CEC 310


>gi|9994187 platelet-derived growth factor C precursor [Homo
           sapiens]
          Length = 345

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 13/164 (7%)

Query: 26  PEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-DLNMTRSHSGGELESLARGRRSLG 84
           P  L   L +++I +F  L+ L+     E    +L DL        G+     R  R + 
Sbjct: 178 PSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVD 237

Query: 85  SLTIAEPAMIAECKTRTEVFEIS-RRLIDRTNANFLVWPPCVEVQRCSG---CC--NNRN 138
              + E   +  C  R   F +S R  + RT+  F  WP C+ V+RC G   CC  N   
Sbjct: 238 LNLLTEEVRLYSCTPRN--FSVSIREELKRTDTIF--WPGCLLVKRCGGNCACCLHNCNE 293

Query: 139 VQCRPTQVQLRPVQVRKIE-IVRKKPIFKKAT-VTLEDHLACKC 180
            QC P++V  +  +V ++      + + K  T V LE H  C C
Sbjct: 294 CQCVPSKVTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDC 337


>gi|13376808 platelet derived growth factor D isoform 1 precursor
           [Homo sapiens]
          Length = 370

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 116 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 170
           AN + +P C+ VQRC G C     N R+  C   +   +  +V + E    K   +  T+
Sbjct: 288 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 347

Query: 171 TLED-----HLACKCETVAAARP 188
            L D     H  C C  + ++RP
Sbjct: 348 ALVDIQLDHHERCDC--ICSSRP 368


>gi|15451921 platelet derived growth factor D isoform 2 precursor
           [Homo sapiens]
          Length = 364

 Score = 30.4 bits (67), Expect = 1.4
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)

Query: 116 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 170
           AN + +P C+ VQRC G C     N R+  C   +   +  +V + E    K   +  T+
Sbjct: 282 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 341

Query: 171 TLED-----HLACKCETVAAARP 188
            L D     H  C C  + ++RP
Sbjct: 342 ALVDIQLDHHERCDC--ICSSRP 362


>gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo
            sapiens]
          Length = 1248

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 18   VSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGD---PGEED-----GAELDLNMTR--- 66
            V +E  P+ +E +   SD+  ++F   Q  L+GD    G +D     G  +D+       
Sbjct: 1156 VDSEARPMKDETFGEYSDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGS 1215

Query: 67   ---SHSGGELESLARGRRSLGSLTIAEPAMIAE 96
                +SG + +  A G  S G+ +   PA+  E
Sbjct: 1216 FIGQYSGKKEKEAAGGNDSSGATSPINPAVALE 1248


>gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo
            sapiens]
          Length = 1253

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%)

Query: 18   VSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGD---PGEED-----GAELDLNMTR--- 66
            V +E  P+ +E +   SD+  ++F   Q  L+GD    G +D     G  +D+       
Sbjct: 1161 VDSEARPMKDETFGEYSDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGS 1220

Query: 67   ---SHSGGELESLARGRRSLGSLTIAEPAMIAE 96
                +SG + +  A G  S G+ +   PA+  E
Sbjct: 1221 FIGQYSGKKEKEAAGGNDSSGATSPINPAVALE 1253


>gi|219803946 within bgcn homolog isoform 2 [Homo sapiens]
          Length = 203

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 185 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 238
           A  PVT S P G +   +KT +  +  +  R ++  KG+      T DK +L+ET
Sbjct: 66  ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 120


>gi|14150139 within bgcn homolog isoform 1 [Homo sapiens]
          Length = 204

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 185 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 238
           A  PVT S P G +   +KT +  +  +  R ++  KG+      T DK +L+ET
Sbjct: 67  ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 121


>gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens]
          Length = 279

 Score = 28.9 bits (63), Expect = 4.2
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 17/69 (24%)

Query: 5   WALFLSLCCYLR-LVSAEGDPIPEELYEML----------SDHSIRSFDDLQRL------ 47
           W L  +LC     +VS    P+ EE+  +L          SDH +R+ D+ QRL      
Sbjct: 45  WRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKAD 104

Query: 48  LHGDPGEED 56
           LH +  E+D
Sbjct: 105 LHDEEDEQD 113


>gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens]
          Length = 1471

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 179  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1144 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1203

Query: 228  ---HTHDKTALKETL 239
               +T+DKTALKE +
Sbjct: 1204 DAINTYDKTALKEAV 1218


>gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens]
          Length = 1479

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 179  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1152 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1211

Query: 228  ---HTHDKTALKETL 239
               +T+DKTALKE +
Sbjct: 1212 DAINTYDKTALKEAV 1226


>gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens]
          Length = 1538

 Score = 28.5 bits (62), Expect = 5.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%)

Query: 179  KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227
            +C+ V+    AA P T   GGS+ +  +T     T  + T   R  P  + R +      
Sbjct: 1211 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1270

Query: 228  ---HTHDKTALKETL 239
               +T+DKTALKE +
Sbjct: 1271 DAINTYDKTALKEAV 1285


>gi|207452735 epiplakin 1 [Homo sapiens]
          Length = 5090

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 11/80 (13%)

Query: 24   PIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-----DLNMTRSHSGGELESLAR 78
            P+PE      S  ++ + + +QR L   PG +DG  L       + T     G LE +  
Sbjct: 1114 PLPE------SAPALPTEEQVQRSLQAVPGAKDGTSLWDLLSSCHFTEEQRRGLLEDVQE 1167

Query: 79   GRRSLGSLTIAEPAMIAECK 98
            GR ++  L  +    + E K
Sbjct: 1168 GRTTVPQLLASVQRWVQETK 1187


>gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens]
          Length = 614

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 14  YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73
           +L+L  A G PIP + YE+               L+G    E G E+D +++R   G   
Sbjct: 374 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 419

Query: 74  ESLARGRR 81
             +   RR
Sbjct: 420 YQIMTMRR 427


>gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens]
          Length = 677

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 14  YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73
           +L+L  A G PIP + YE+               L+G    E G E+D +++R   G   
Sbjct: 437 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 482

Query: 74  ESLARGRR 81
             +   RR
Sbjct: 483 YQIMTMRR 490


>gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens]
          Length = 732

 Score = 28.1 bits (61), Expect = 7.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 14  YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73
           +L+L  A G PIP + YE+               L+G    E G E+D +++R   G   
Sbjct: 492 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 537

Query: 74  ESLARGRR 81
             +   RR
Sbjct: 538 YQIMTMRR 545


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,920,216
Number of Sequences: 37866
Number of extensions: 428721
Number of successful extensions: 1217
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1191
Number of HSP's gapped (non-prelim): 41
length of query: 241
length of database: 18,247,518
effective HSP length: 99
effective length of query: 142
effective length of database: 14,498,784
effective search space: 2058827328
effective search space used: 2058827328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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