BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|4505681 platelet-derived growth factor beta isoform 1 preproprotein [Homo sapiens] (241 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|4505681 platelet-derived growth factor beta isoform 1 preprop... 494 e-140 gi|15451786 platelet-derived growth factor beta isoform 2 prepro... 449 e-126 gi|15208656 platelet-derived growth factor alpha isoform 2 prepr... 147 1e-35 gi|77695917 platelet-derived growth factor alpha isoform 1 prepr... 147 1e-35 gi|4507887 vascular endothelial growth factor B [Homo sapiens] 52 4e-07 gi|4758378 vascular endothelial growth factor D preproprotein [H... 51 8e-07 gi|4885653 vascular endothelial growth factor C preproprotein [H... 51 1e-06 gi|20149543 placental growth factor, vascular endothelial growth... 46 3e-05 gi|76781482 vascular endothelial growth factor A isoform c precu... 43 2e-04 gi|76781481 vascular endothelial growth factor A isoform b precu... 43 2e-04 gi|76781480 vascular endothelial growth factor A isoform a precu... 43 2e-04 gi|76781484 vascular endothelial growth factor A isoform e precu... 42 4e-04 gi|76781483 vascular endothelial growth factor A isoform d precu... 42 4e-04 gi|76781487 vascular endothelial growth factor A isoform g precu... 42 4e-04 gi|76781485 vascular endothelial growth factor A isoform f precu... 42 5e-04 gi|9994187 platelet-derived growth factor C precursor [Homo sapi... 39 0.004 gi|13376808 platelet derived growth factor D isoform 1 precursor... 30 1.4 gi|15451921 platelet derived growth factor D isoform 2 precursor... 30 1.4 gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo... 29 4.2 gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo ... 29 4.2 gi|219803946 within bgcn homolog isoform 2 [Homo sapiens] 29 4.2 gi|14150139 within bgcn homolog isoform 1 [Homo sapiens] 29 4.2 gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens] 29 4.2 gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens] 28 5.5 gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens] 28 5.5 gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] 28 5.5 gi|207452735 epiplakin 1 [Homo sapiens] 28 7.1 gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens] 28 7.1 gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens] 28 7.1 gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens] 28 7.1 >gi|4505681 platelet-derived growth factor beta isoform 1 preproprotein [Homo sapiens] Length = 241 Score = 494 bits (1271), Expect = e-140 Identities = 241/241 (100%), Positives = 241/241 (100%) Query: 1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL 60 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL Sbjct: 1 MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL 60 Query: 61 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV 120 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV Sbjct: 61 DLNMTRSHSGGELESLARGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLV 120 Query: 121 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC 180 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC Sbjct: 121 WPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKC 180 Query: 181 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG 240 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG Sbjct: 181 ETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLG 240 Query: 241 A 241 A Sbjct: 241 A 241 >gi|15451786 platelet-derived growth factor beta isoform 2 preproprotein [Homo sapiens] Length = 226 Score = 449 bits (1154), Expect = e-126 Identities = 220/220 (100%), Positives = 220/220 (100%) Query: 22 GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 81 GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR Sbjct: 7 GDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGELESLARGRR 66 Query: 82 SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 141 SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC Sbjct: 67 SLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQC 126 Query: 142 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 201 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA Sbjct: 127 RPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRA 186 Query: 202 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 241 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA Sbjct: 187 KTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKETLGA 226 >gi|15208656 platelet-derived growth factor alpha isoform 2 preproprotein [Homo sapiens] Length = 196 Score = 147 bits (370), Expect = 1e-35 Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 11/183 (6%) Query: 7 LFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMT 65 L L C YL V AE IP E+ E L+ I S DLQRLL D G ED + L Sbjct: 7 LLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAH 66 Query: 66 RSHSGGELESLA----RGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW 121 H+ + R +RS+ E A+ A CKTRT ++EI R +D T+ANFL+W Sbjct: 67 GVHATKHVPEKRPLPIRRKRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW 120 Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181 PPCVEV+RC+GCCN +V+C+P++V R V+V K+E VRKKP K+ V LE+HL C C Sbjct: 121 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA 180 Query: 182 TVA 184 T + Sbjct: 181 TTS 183 >gi|77695917 platelet-derived growth factor alpha isoform 1 preproprotein [Homo sapiens] Length = 211 Score = 147 bits (370), Expect = 1e-35 Identities = 83/183 (45%), Positives = 108/183 (59%), Gaps = 11/183 (6%) Query: 7 LFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDP-GEEDGAELDLNMT 65 L L C YL V AE IP E+ E L+ I S DLQRLL D G ED + L Sbjct: 7 LLLLGCGYLAHVLAEEAEIPREVIERLARSQIHSIRDLQRLLEIDSVGSEDSLDTSLRAH 66 Query: 66 RSHSGGELESLA----RGRRSLGSLTIAEPAMIAECKTRTEVFEISRRLIDRTNANFLVW 121 H+ + R +RS+ E A+ A CKTRT ++EI R +D T+ANFL+W Sbjct: 67 GVHATKHVPEKRPLPIRRKRSI------EEAVPAVCKTRTVIYEIPRSQVDPTSANFLIW 120 Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181 PPCVEV+RC+GCCN +V+C+P++V R V+V K+E VRKKP K+ V LE+HL C C Sbjct: 121 PPCVEVKRCTGCCNTSSVKCQPSRVHHRSVKVAKVEYVRKKPKLKEVQVRLEEHLECACA 180 Query: 182 TVA 184 T + Sbjct: 181 TTS 183 >gi|4507887 vascular endothelial growth factor B [Homo sapiens] Length = 207 Score = 52.4 bits (124), Expect = 4e-07 Identities = 40/119 (33%), Positives = 58/119 (48%), Gaps = 13/119 (10%) Query: 95 AECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVR 154 A C+ R V ++ L+ T A LV P CV VQRC GCC + ++C PT QVR Sbjct: 45 ATCQPREVVVPLTVELMG-TVAKQLV-PSCVTVQRCGGCCPDDGLECVPTGQH----QVR 98 Query: 155 KIEIVRKKPIFKKATVTLEDHLACKCETVAAARPVTRSPGGSQEQRAKTPQTRVTIRTV 213 ++ + P + ++LE+H C+C RP + + RA TP R R+V Sbjct: 99 MQILMIRYPSSQLGEMSLEEHSQCEC------RP-KKKDSAVKPDRAATPHHRPQPRSV 150 >gi|4758378 vascular endothelial growth factor D preproprotein [Homo sapiens] Length = 354 Score = 51.2 bits (121), Expect = 8e-07 Identities = 30/93 (32%), Positives = 41/93 (44%), Gaps = 3/93 (3%) Query: 96 ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 155 +C R E++ L TN F PPCV V RC GCCN ++ C T Q+ + Sbjct: 110 QCSPRETCVEVASELGKSTNTFFK--PPCVNVFRCGGCCNEESLICMNTSTSYISKQLFE 167 Query: 156 IEIVRKKPIFKKATVTLEDHLACKCETVAAARP 188 I V + + V + +H CKC A P Sbjct: 168 IS-VPLTSVPELVPVKVANHTGCKCLPTAPRHP 199 >gi|4885653 vascular endothelial growth factor C preproprotein [Homo sapiens] Length = 419 Score = 50.8 bits (120), Expect = 1e-06 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 5/86 (5%) Query: 96 ECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRK 155 +C R ++ + TN F PPCV V RC GCCN+ +QC T + + Sbjct: 130 QCMPREVCIDVGKEFGVATNTFFK--PPCVSVYRCGGCCNSEGLQCMNTSTSYLSKTLFE 187 Query: 156 IEI-VRKKPIFKKATVTLEDHLACKC 180 I + + + P K T++ +H +C+C Sbjct: 188 ITVPLSQGP--KPVTISFANHTSCRC 211 >gi|20149543 placental growth factor, vascular endothelial growth factor-related protein [Homo sapiens] Length = 170 Score = 46.2 bits (108), Expect = 3e-05 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query: 122 PPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLACKCE 181 P CV + RC+GCC + N+ C P + +Q+ KI +P + +T H+ C+C Sbjct: 75 PSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIR-SGDRPSY--VELTFSQHVRCECR 131 Query: 182 TV-AAARPVTRSPGGSQEQR 200 + +P R P G ++R Sbjct: 132 PLREKMKPERRRPKGRGKRR 151 >gi|76781482 vascular endothelial growth factor A isoform c precursor [Homo sapiens] Length = 389 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202 C+C + + R G Q+++ K Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336 >gi|76781481 vascular endothelial growth factor A isoform b precursor [Homo sapiens] Length = 395 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202 C+C + + R G Q+++ K Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336 >gi|76781480 vascular endothelial growth factor A isoform a precursor [Homo sapiens] Length = 412 Score = 43.1 bits (100), Expect = 2e-04 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKC----ETVAAARPVTRSPGGSQEQRAK 202 C+C + + R G Q+++ K Sbjct: 308 CECRPKKDRARQEKKSVRGKGKGQKRKRK 336 >gi|76781484 vascular endothelial growth factor A isoform e precursor [Homo sapiens] Length = 354 Score = 42.4 bits (98), Expect = 4e-04 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202 C+C R +P G +R K Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331 >gi|76781483 vascular endothelial growth factor A isoform d precursor [Homo sapiens] Length = 371 Score = 42.4 bits (98), Expect = 4e-04 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202 C+C R +P G +R K Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331 >gi|76781487 vascular endothelial growth factor A isoform g precursor [Homo sapiens] Length = 371 Score = 42.4 bits (98), Expect = 4e-04 Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 4/85 (4%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKCETVAAARPVTRSPGGSQEQRAK 202 C+C R +P G +R K Sbjct: 308 CECRP-KKDRARQENPCGPCSERRK 331 >gi|76781485 vascular endothelial growth factor A isoform f precursor [Homo sapiens] Length = 327 Score = 42.0 bits (97), Expect = 5e-04 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%) Query: 118 FLVWPPCVEVQRCSGCCNNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATVTLEDHLA 177 ++ P CV + RC GCCN+ ++C PT+ +Q+ +I+ + + I ++ H Sbjct: 251 YIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHI---GEMSFLQHNK 307 Query: 178 CKC 180 C+C Sbjct: 308 CEC 310 >gi|9994187 platelet-derived growth factor C precursor [Homo sapiens] Length = 345 Score = 38.9 bits (89), Expect = 0.004 Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 13/164 (7%) Query: 26 PEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-DLNMTRSHSGGELESLARGRRSLG 84 P L L +++I +F L+ L+ E +L DL G+ R R + Sbjct: 178 PSALPLDLLNNAITAFSTLEDLIRYLEPERWQLDLEDLYRPTWQLLGKAFVFGRKSRVVD 237 Query: 85 SLTIAEPAMIAECKTRTEVFEIS-RRLIDRTNANFLVWPPCVEVQRCSG---CC--NNRN 138 + E + C R F +S R + RT+ F WP C+ V+RC G CC N Sbjct: 238 LNLLTEEVRLYSCTPRN--FSVSIREELKRTDTIF--WPGCLLVKRCGGNCACCLHNCNE 293 Query: 139 VQCRPTQVQLRPVQVRKIE-IVRKKPIFKKAT-VTLEDHLACKC 180 QC P++V + +V ++ + + K T V LE H C C Sbjct: 294 CQCVPSKVTKKYHEVLQLRPKTGVRGLHKSLTDVALEHHEECDC 337 >gi|13376808 platelet derived growth factor D isoform 1 precursor [Homo sapiens] Length = 370 Score = 30.4 bits (67), Expect = 1.4 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%) Query: 116 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 170 AN + +P C+ VQRC G C N R+ C + + +V + E K + T+ Sbjct: 288 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 347 Query: 171 TLED-----HLACKCETVAAARP 188 L D H C C + ++RP Sbjct: 348 ALVDIQLDHHERCDC--ICSSRP 368 >gi|15451921 platelet derived growth factor D isoform 2 precursor [Homo sapiens] Length = 364 Score = 30.4 bits (67), Expect = 1.4 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%) Query: 116 ANFLVWPPCVEVQRCSGCC-----NNRNVQCRPTQVQLRPVQVRKIEIVRKKPIFKKATV 170 AN + +P C+ VQRC G C N R+ C + + +V + E K + T+ Sbjct: 282 ANVVFFPRCLLVQRCGGNCGCGTVNWRSCTCNSGKTVKKYHEVLQFEPGHIKRRGRAKTM 341 Query: 171 TLED-----HLACKCETVAAARP 188 L D H C C + ++RP Sbjct: 342 ALVDIQLDHHERCDC--ICSSRP 362 >gi|221316760 L1 cell adhesion molecule isoform 3 precursor [Homo sapiens] Length = 1248 Score = 28.9 bits (63), Expect = 4.2 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%) Query: 18 VSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGD---PGEED-----GAELDLNMTR--- 66 V +E P+ +E + SD+ ++F Q L+GD G +D G +D+ Sbjct: 1156 VDSEARPMKDETFGEYSDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGS 1215 Query: 67 ---SHSGGELESLARGRRSLGSLTIAEPAMIAE 96 +SG + + A G S G+ + PA+ E Sbjct: 1216 FIGQYSGKKEKEAAGGNDSSGATSPINPAVALE 1248 >gi|13435353 L1 cell adhesion molecule isoform 2 precursor [Homo sapiens] Length = 1253 Score = 28.9 bits (63), Expect = 4.2 Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 14/93 (15%) Query: 18 VSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGD---PGEED-----GAELDLNMTR--- 66 V +E P+ +E + SD+ ++F Q L+GD G +D G +D+ Sbjct: 1161 VDSEARPMKDETFGEYSDNEEKAFGSSQPSLNGDIKPLGSDDSLADYGGSVDVQFNEDGS 1220 Query: 67 ---SHSGGELESLARGRRSLGSLTIAEPAMIAE 96 +SG + + A G S G+ + PA+ E Sbjct: 1221 FIGQYSGKKEKEAAGGNDSSGATSPINPAVALE 1253 >gi|219803946 within bgcn homolog isoform 2 [Homo sapiens] Length = 203 Score = 28.9 bits (63), Expect = 4.2 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 185 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 238 A PVT S P G + +KT + + + R ++ KG+ T DK +L+ET Sbjct: 66 ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 120 >gi|14150139 within bgcn homolog isoform 1 [Homo sapiens] Length = 204 Score = 28.9 bits (63), Expect = 4.2 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 185 AARPVTRS-PGGSQEQRAKTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKTALKET 238 A PVT S P G + +KT + + + R ++ KG+ T DK +L+ET Sbjct: 67 ATAPVTPSRPEGGEPGLSKTAKRNLKRKEKRRQQQEKGEAEALSRTLDKVSLEET 121 >gi|26667177 mitochondrial ribosomal protein L46 [Homo sapiens] Length = 279 Score = 28.9 bits (63), Expect = 4.2 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 17/69 (24%) Query: 5 WALFLSLCCYLR-LVSAEGDPIPEELYEML----------SDHSIRSFDDLQRL------ 47 W L +LC +VS P+ EE+ +L SDH +R+ D+ QRL Sbjct: 45 WRLLGALCLQRPPVVSKPLTPLQEEMASLLQQIEIERSLYSDHELRALDENQRLAKKKAD 104 Query: 48 LHGDPGEED 56 LH + E+D Sbjct: 105 LHDEEDEQD 113 >gi|214010175 CLIP-associating protein 1 isoform 3 [Homo sapiens] Length = 1471 Score = 28.5 bits (62), Expect = 5.5 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%) Query: 179 KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227 +C+ V+ AA P T GGS+ + +T T + T R P + R + Sbjct: 1144 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1203 Query: 228 ---HTHDKTALKETL 239 +T+DKTALKE + Sbjct: 1204 DAINTYDKTALKEAV 1218 >gi|214010173 CLIP-associating protein 1 isoform 2 [Homo sapiens] Length = 1479 Score = 28.5 bits (62), Expect = 5.5 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%) Query: 179 KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227 +C+ V+ AA P T GGS+ + +T T + T R P + R + Sbjct: 1152 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1211 Query: 228 ---HTHDKTALKETL 239 +T+DKTALKE + Sbjct: 1212 DAINTYDKTALKEAV 1226 >gi|31563537 CLIP-associating protein 1 isoform 1 [Homo sapiens] Length = 1538 Score = 28.5 bits (62), Expect = 5.5 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 14/75 (18%) Query: 179 KCETVA----AARPVTRSPGGSQEQRAKTPQTRVT--IRTVRVRRPPKGKHRKFK----- 227 +C+ V+ AA P T GGS+ + +T T + T R P + R + Sbjct: 1211 ECDIVSRDGGAASPATEGRGGSEVEGGRTALDNKTSLLNTQPPRAFPGPRARDYNPYPYS 1270 Query: 228 ---HTHDKTALKETL 239 +T+DKTALKE + Sbjct: 1271 DAINTYDKTALKEAV 1285 >gi|207452735 epiplakin 1 [Homo sapiens] Length = 5090 Score = 28.1 bits (61), Expect = 7.1 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 11/80 (13%) Query: 24 PIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAEL-----DLNMTRSHSGGELESLAR 78 P+PE S ++ + + +QR L PG +DG L + T G LE + Sbjct: 1114 PLPE------SAPALPTEEQVQRSLQAVPGAKDGTSLWDLLSSCHFTEEQRRGLLEDVQE 1167 Query: 79 GRRSLGSLTIAEPAMIAECK 98 GR ++ L + + E K Sbjct: 1168 GRTTVPQLLASVQRWVQETK 1187 >gi|189491778 nephrocystin 1 isoform 4 [Homo sapiens] Length = 614 Score = 28.1 bits (61), Expect = 7.1 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 14 YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73 +L+L A G PIP + YE+ L+G E G E+D +++R G Sbjct: 374 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 419 Query: 74 ESLARGRR 81 + RR Sbjct: 420 YQIMTMRR 427 >gi|189491776 nephrocystin 1 isoform 3 [Homo sapiens] Length = 677 Score = 28.1 bits (61), Expect = 7.1 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 14 YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73 +L+L A G PIP + YE+ L+G E G E+D +++R G Sbjct: 437 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 482 Query: 74 ESLARGRR 81 + RR Sbjct: 483 YQIMTMRR 490 >gi|189491774 nephrocystin 1 isoform 2 [Homo sapiens] Length = 732 Score = 28.1 bits (61), Expect = 7.1 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 14 YLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDPGEEDGAELDLNMTRSHSGGEL 73 +L+L A G PIP + YE+ L+G E G E+D +++R G Sbjct: 492 FLKLFDASGVPIPAKTYEL--------------FLNGGTPYEKGIEVDPSISRRAHGSVF 537 Query: 74 ESLARGRR 81 + RR Sbjct: 538 YQIMTMRR 545 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.321 0.134 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 9,920,216 Number of Sequences: 37866 Number of extensions: 428721 Number of successful extensions: 1217 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 18 Number of HSP's that attempted gapping in prelim test: 1191 Number of HSP's gapped (non-prelim): 41 length of query: 241 length of database: 18,247,518 effective HSP length: 99 effective length of query: 142 effective length of database: 14,498,784 effective search space: 2058827328 effective search space used: 2058827328 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.