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Search of human proteins with 13124883
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|13124883 HsKin17 protein [Homo sapiens]
(393 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|13124883 HsKin17 protein [Homo sapiens] 789 0.0
gi|15811782 G patch domain and KOW motifs [Homo sapiens] 45 1e-04
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 45 1e-04
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 45 1e-04
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 43 6e-04
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 42 0.001
gi|44680105 caldesmon 1 isoform 1 [Homo sapiens] 41 0.002
gi|55741677 SET domain containing 1A [Homo sapiens] 40 0.003
gi|238908495 similar to pleckstrin homology domain protein (5V32... 40 0.004
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ... 40 0.004
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s... 40 0.004
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa... 40 0.004
gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo... 39 0.006
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 39 0.006
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 39 0.006
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 39 0.008
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 39 0.008
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 39 0.008
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 39 0.008
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 39 0.008
gi|239745079 PREDICTED: Putative golgin subfamily A member 6-lik... 39 0.011
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 39 0.011
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 39 0.011
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 39 0.011
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 39 0.011
gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo sa... 38 0.014
gi|109637763 calpastatin isoform h [Homo sapiens] 38 0.014
gi|109637757 calpastatin isoform e [Homo sapiens] 38 0.014
gi|38569484 kinesin family member 21A [Homo sapiens] 38 0.014
gi|6912482 leucine zipper-EF-hand containing transmembrane prote... 37 0.024
>gi|13124883 HsKin17 protein [Homo sapiens]
Length = 393
Score = 789 bits (2037), Expect = 0.0
Identities = 393/393 (100%), Positives = 393/393 (100%)
Query: 1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60
MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN
Sbjct: 1 MGKSDFLTPKAIANRIKSKGLQKLRWYCQMCQKQCRDENGFKCHCMSESHQRQLLLASEN 60
Query: 61 PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120
PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK
Sbjct: 61 PQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQWETLTDFTK 120
Query: 121 WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG 180
WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG
Sbjct: 121 WLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRG 180
Query: 181 LEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVK 240
LEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVK
Sbjct: 181 LEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVK 240
Query: 241 RKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHK 300
RKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHK
Sbjct: 241 RKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHK 300
Query: 301 KKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESI 360
KKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESI
Sbjct: 301 KKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLESI 360
Query: 361 NEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 393
NEKTFSATIVIETGPLKGRRVEGIQYEDISKLA
Sbjct: 361 NEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 393
>gi|15811782 G patch domain and KOW motifs [Homo sapiens]
Length = 476
Score = 45.1 bits (105), Expect = 1e-04
Identities = 35/131 (26%), Positives = 67/131 (51%), Gaps = 6/131 (4%)
Query: 234 GSSASVKRKESSQSSTQSKEKKKKKSALDEIME--IEEEKKRTARTDYWLQPEIIVKIIT 291
G+++S K + + Q ++K+ L + + + +K R+ +WL ++ V+ +
Sbjct: 309 GTASSRKTLWNQELYIQQDNSERKRKHLPDRQDGPAAKSEKAAPRSQHWLHRDLRVRFVD 368
Query: 292 KKL-GEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLK-LDQTHLETVIP-APGKRILVLNG 348
G +Y+ K I+++V+ T V + D G L+ L + LET++P A G R++V+ G
Sbjct: 369 NMYKGGQYYNTKMIIEDVLSPDTCVCR-TDEGRVLEGLREDMLETLVPKAEGDRVMVVLG 427
Query: 349 GYRGNEGTLES 359
G G L S
Sbjct: 428 PQTGRVGHLLS 438
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 44.7 bits (104), Expect = 1e-04
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 44/207 (21%)
Query: 143 DRDPETIR---RQLELEKKKKQDLDDE-EKTAKFIEEQVRRGLEGKEQEVPTFTELSREN 198
DR+ E R R+ E E+ K +D D E EK + +E+ R KE E E +E
Sbjct: 394 DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQ 453
Query: 199 DEEKV------------------------TFNLSKGACSSS---GATSSKSSTLGPSALK 231
D+EK ++N S+ + SSS S+SS+ P K
Sbjct: 454 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 513
Query: 232 TIGSSASVKRKESSQSSTQSKEKKKKK--SALDEIMEIEEEKKRTA--RTDYWLQPEIIV 287
TI KRK S S +S+ KK KK D I E E ++ T+ ++ + +
Sbjct: 514 TI------KRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKL 567
Query: 288 KIITKKLGEKYHKKK---AIVKEVIDK 311
+ + L EK H K+ ++ KEV DK
Sbjct: 568 EKNSTSLKEKEHNKEPDSSVSKEVDDK 594
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 44.7 bits (104), Expect = 1e-04
Identities = 60/207 (28%), Positives = 89/207 (42%), Gaps = 44/207 (21%)
Query: 143 DRDPETIR---RQLELEKKKKQDLDDE-EKTAKFIEEQVRRGLEGKEQEVPTFTELSREN 198
DR+ E R R+ E E+ K +D D E EK + +E+ R KE E E +E
Sbjct: 278 DREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQ 337
Query: 199 DEEKV------------------------TFNLSKGACSSS---GATSSKSSTLGPSALK 231
D+EK ++N S+ + SSS S+SS+ P K
Sbjct: 338 DKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSK 397
Query: 232 TIGSSASVKRKESSQSSTQSKEKKKKK--SALDEIMEIEEEKKRTA--RTDYWLQPEIIV 287
TI KRK S S +S+ KK KK D I E E ++ T+ ++ + +
Sbjct: 398 TI------KRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKL 451
Query: 288 KIITKKLGEKYHKKK---AIVKEVIDK 311
+ + L EK H K+ ++ KEV DK
Sbjct: 452 EKNSTSLKEKEHNKEPDSSVSKEVDDK 478
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 42.7 bits (99), Expect = 6e-04
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 26/193 (13%)
Query: 156 EKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEV---PTFTELSRENDEEKVTFNLSKGAC 212
EK+KK+ D + Q R+ E P TE S++ + S +
Sbjct: 145 EKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPSPCITERSKQKARRRTR---SSSSS 201
Query: 213 SSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEK-KKKKSALDEIMEIE--- 268
SSS ++SS SS+ S+ + G K K+ + + ++K KKK E ++E
Sbjct: 202 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALP 261
Query: 269 ------------EEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVV 316
EE+ TD +K +TK E++ +++I+++V+D T
Sbjct: 262 GPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTK---EEWDARQSIIRKVVDPETGRT 318
Query: 317 KMIDSGDKLKLDQ 329
++I GD L++
Sbjct: 319 RLI-KGDGEVLEE 330
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 41.6 bits (96), Expect = 0.001
Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 23/168 (13%)
Query: 147 ETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKVTFN 206
E +++QLE +K + L + E+ + E ++ LE +++ + E S + E K
Sbjct: 42 EEVKKQLENKKTGSKALAEFEEK---MNENWKKELEKSREKLLSGNESSSKKRERKK--K 96
Query: 207 LSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRK-------ESSQSSTQSKEKKKKKS 259
K +C SS ++SS S+ S + +RK +SSQSST E + K+S
Sbjct: 97 RKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKES 156
Query: 260 ALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKE 307
++++KK T + E V+ ++KK + Y K + E
Sbjct: 157 -------VKKKKKSKDET----EKEKDVRSLSKKRKKSYPDDKPLSSE 193
Score = 33.5 bits (75), Expect = 0.34
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 18/107 (16%)
Query: 154 ELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACS 213
E KKKK+ D+ EK K + ++ + + P +E S E+D E+ K C
Sbjct: 155 ESVKKKKKSKDETEKE-KDVRSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCE 213
Query: 214 SSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSA 260
K VK+K+ Q SK+KKKK +
Sbjct: 214 EREQAKEK-----------------VKKKKKKQHKKHSKKKKKKSGS 243
Score = 30.0 bits (66), Expect = 3.8
Identities = 28/132 (21%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 143 DRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEK 202
D + E ++ +KKK + + + E + + ++ K++ E ++EK
Sbjct: 119 DSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKS-------KDETEKEK 171
Query: 203 VTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALD 262
+LSK S SS S+ K+K + Q+KEK KKK
Sbjct: 172 DVRSLSKKRKKSYPDDKPLSSE--SSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQ 229
Query: 263 EIMEIEEEKKRT 274
+++KK++
Sbjct: 230 HKKHSKKKKKKS 241
>gi|44680105 caldesmon 1 isoform 1 [Homo sapiens]
Length = 793
Score = 41.2 bits (95), Expect = 0.002
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 154 ELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACS 213
+ E+ KK+D + EE+ EE+ +RG G+ Q E + E+ EE V +L G S
Sbjct: 179 DAEENKKEDKEKEEEE----EEKPKRGSIGENQVEVMVEEKTTESQEETVVMSLKNGQIS 234
Query: 214 SSGATSSKSSTLGPSALK--TIGSSASVKRKESSQSSTQSKEKKK-----KKSALDEIME 266
S + G + +R E+ ++ +++E+++ K DE
Sbjct: 235 SEEPKQEEEREQGSDEISHHEKMEEEDKERAEAERARLEAEERERIKAEQDKKIADERAR 294
Query: 267 IEEEKKRTAR 276
IE E+K A+
Sbjct: 295 IEAEEKAAAQ 304
Score = 36.2 bits (82), Expect = 0.053
Identities = 39/185 (21%), Positives = 79/185 (42%), Gaps = 11/185 (5%)
Query: 156 EKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSS 215
EK +++D + E +E + R ++ EQ+ E +R EEK A
Sbjct: 255 EKMEEEDKERAEAERARLEAEERERIKA-EQDKKIADERARIEAEEKAA------AQERE 307
Query: 216 GATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTA 275
+ + + + +K +E + + + K+++K A +E I+EE+KR A
Sbjct: 308 RREAEERERMREEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAAEERQRIKEEEKRAA 367
Query: 276 --RTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSG--DKLKLDQTH 331
R + E K+ +K ++ +KK ++E K V + I+ ++ K +
Sbjct: 368 EERQRARAEEEEKAKVEEQKRNKQLEEKKHAMQETKIKGEKVEQKIEGKWVNEKKAQEDK 427
Query: 332 LETVI 336
L+T +
Sbjct: 428 LQTAV 432
Score = 32.7 bits (73), Expect = 0.58
Identities = 35/155 (22%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Query: 150 RRQLELEKK--KKQDLDDEE-KTAKFIEEQVRRGLEGKEQEVPTFTELSRENDE------ 200
R +L+ +K KK+++ DE+ K K +E+V+ ++ K+ FTE+ +N E
Sbjct: 448 REKLQEDKPTFKKEEIKDEKIKKDKEPKEEVKSFMDRKKG----FTEVKSQNGEFMTHKL 503
Query: 201 --EKVTFNLSKGACS-----SSGATSSKSSTLGPSALKTIGSSASVK----RKESSQSST 249
+ TF+ G S + GA ++ + G + S + +++ +++
Sbjct: 504 KHTENTFSRPGGRASVDTKEAEGAPQVEAGKRLEELRRRRGETESEEFEKLKQKQQEAAL 563
Query: 250 QSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPE 284
+ +E KKK+ +++E EE++++ D L+ E
Sbjct: 564 ELEELKKKREERRKVLEEEEQRRKQEEADRKLREE 598
Score = 31.2 bits (69), Expect = 1.7
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 174 EEQVRRGLEGKEQEVPTFTELS-------REND--EEKVTFNLSKGACSSSGATSSKSST 224
+++++ LE +++ PT T+ S +ND E + T K ++ T
Sbjct: 108 QKRLQEALERQKEFDPTITDASLSLPSRRMQNDTAENETTEKEEKSESRQERYEIEETET 167
Query: 225 LGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRT 274
+ S K A +KE + + +EK K+ S + +E+ E+K T
Sbjct: 168 VTKSYQKNDWRDAEENKKEDKEKEEEEEEKPKRGSIGENQVEVMVEEKTT 217
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 40.4 bits (93), Expect = 0.003
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 20/127 (15%)
Query: 142 IDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTF---TELSREN 198
+D + E ++ EK ++ D +DEE E +E+ V T TE+S
Sbjct: 961 LDSEGEEASQESSSEKDEEDDEEDEED-------------EDREEAVDTTKKETEVSDGE 1007
Query: 199 DEEKVTFNLSKGACSSSG----ATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEK 254
DEE + + S G + S+SS+ S+ + SS+S SS+SS++ +E+
Sbjct: 1008 DEESDSSSKCSLYADSDGENDSTSDSESSSSSSSSSSSSSSSSSSSSSSSSESSSEDEEE 1067
Query: 255 KKKKSAL 261
+++ +AL
Sbjct: 1068 EERPAAL 1074
Score = 32.0 bits (71), Expect = 0.99
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 10/104 (9%)
Query: 182 EGKEQEVPTFT----ELSRENDEEKVTFN----LSKGACSSSGATSSKSSTLGPSALKTI 233
E KE++ F + ++E D+EK LS + SG T+ + S L+
Sbjct: 828 ESKEEKAKPFQNAAKQQAKEEDKEKTKLKEPGLLSLVDWAKSGGTTGIEAFAFGSGLRGA 887
Query: 234 GS--SASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTA 275
S VKRKE S+ S S+EK+ + S E E + E+++ A
Sbjct: 888 LRLPSFKVKRKEPSEISEASEEKRPRPSTPAEEDEDDPEQEKEA 931
>gi|238908495 similar to pleckstrin homology domain protein (5V327)
[Homo sapiens]
Length = 506
Score = 40.0 bits (92), Expect = 0.004
Identities = 37/202 (18%), Positives = 90/202 (44%), Gaps = 13/202 (6%)
Query: 139 IQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSREN 198
+Q + + E I+R+LEL + + ++ E+K + + E +++ LE E E+ EN
Sbjct: 205 VQELRMEQEQIKRELELTARCLKGVEQEKKELRHLTESLQQTLEELSIEKKKTLEMLEEN 264
Query: 199 DEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSS--ASVKRKESSQSSTQSKEKK- 255
+ T SG S + + + A + KE+ + S +E++
Sbjct: 265 ENHLQTLANQSEQPPPSGGLHSNLRQIEEKMQQLLEEKLLAEKRMKENEERSRALEEERE 324
Query: 256 ----KKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDK 311
+ ++ + + E+ EK++ R L+ E+ V++ L + + + ++ +
Sbjct: 325 FYSSQSQALQNSLQELTAEKQQAERE---LKAEVKVRM---DLERRLREAEGALRSLEQG 378
Query: 312 YTAVVKMIDSGDKLKLDQTHLE 333
+ V+ + ++++ D +HL+
Sbjct: 379 LNSKVRNKEKEERMRADVSHLK 400
>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
sapiens]
Length = 1188
Score = 40.0 bits (92), Expect = 0.004
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 142 IDRDPETIRRQLELEKKK---------KQDLDDEEKTAKFIEEQVRRGLEG----KEQEV 188
I RD +I++++E EK + +D+DD+ +TA+ E ++ G + KE+++
Sbjct: 473 IARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEKKI 532
Query: 189 PTFTELSRENDEEKVTFNL---SKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESS 245
+ +++DEE+ ++ C S G + ++ + VK K
Sbjct: 533 KKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEED-------MEPCLTGTKVKVKYGR 585
Query: 246 QSSTQSKEKKKKKSALD--EIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKA 303
+ + E K + +D E++ + R D W++ + I+ + K +K KKKA
Sbjct: 586 GKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKA 645
Query: 304 IVKEVIDK 311
KE +K
Sbjct: 646 KNKEDSEK 653
>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
sapiens]
Length = 1203
Score = 40.0 bits (92), Expect = 0.004
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 142 IDRDPETIRRQLELEKKK---------KQDLDDEEKTAKFIEEQVRRGLEG----KEQEV 188
I RD +I++++E EK + +D+DD+ +TA+ E ++ G + KE+++
Sbjct: 473 IARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEKKI 532
Query: 189 PTFTELSRENDEEKVTFNL---SKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESS 245
+ +++DEE+ ++ C S G + ++ + VK K
Sbjct: 533 KKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEED-------MEPCLTGTKVKVKYGR 585
Query: 246 QSSTQSKEKKKKKSALD--EIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKA 303
+ + E K + +D E++ + R D W++ + I+ + K +K KKKA
Sbjct: 586 GKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKA 645
Query: 304 IVKEVIDK 311
KE +K
Sbjct: 646 KNKEDSEK 653
>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
sapiens]
Length = 1257
Score = 40.0 bits (92), Expect = 0.004
Identities = 42/188 (22%), Positives = 84/188 (44%), Gaps = 25/188 (13%)
Query: 142 IDRDPETIRRQLELEKKK---------KQDLDDEEKTAKFIEEQVRRGLEG----KEQEV 188
I RD +I++++E EK + +D+DD+ +TA+ E ++ G + KE+++
Sbjct: 473 IARDVNSIKKEIEEEKTEDKLKDNDTENKDVDDDYETAEKKENELLLGRKNTPKQKEKKI 532
Query: 189 PTFTELSRENDEEKVTFNL---SKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESS 245
+ +++DEE+ ++ C S G + ++ + VK K
Sbjct: 533 KKQEDSDKDSDEEEEKSQEREETESKCDSEGEEDEED-------MEPCLTGTKVKVKYGR 585
Query: 246 QSSTQSKEKKKKKSALD--EIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKA 303
+ + E K + +D E++ + R D W++ + I+ + K +K KKKA
Sbjct: 586 GKTQKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKGGPKKKQKKKA 645
Query: 304 IVKEVIDK 311
KE +K
Sbjct: 646 KNKEDSEK 653
>gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo
sapiens]
Length = 1014
Score = 39.3 bits (90), Expect = 0.006
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 6/113 (5%)
Query: 176 QVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGS 235
+V + + EV F+EL R +D++KV K + G T +G A KT+G
Sbjct: 59 KVGHSIRHPDVEVDGFSEL-RWDDQQKV-----KKTAEAGGVTGKGQDGIGSKAEKTLGD 112
Query: 236 SASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVK 288
A+ K + + EK +K ++ EK + D W P VK
Sbjct: 113 FAAEYAKSNRSTCKGCMEKIEKGQVRLSKKMVDPEKPQLGMIDRWYHPGCFVK 165
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 39.3 bits (90), Expect = 0.006
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 151 RQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDE---------- 200
+Q+E EK++ + + E E+ LE +E + E R +E
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKE 498
Query: 201 --EKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKK 258
EK S+ SSSG++SS S T S+ T+ SS+ SS++S++S K+KK
Sbjct: 499 HKEKEKQGRSRSGSSSSGSSSSNSRTSSTSS--TVSSSSYSSSSGSSRTSSRSSSPKRKK 556
Score = 36.6 bits (83), Expect = 0.040
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 140 QYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSREND 199
Q +R + + + E+ L+ E + E+ R E P +E
Sbjct: 446 QQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKEHKEKEKQ 505
Query: 200 EEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKS 259
+ + S G+ SS+ TSS SST+ S+ SS+S + SS+SS+ ++K+ +S
Sbjct: 506 GRSRSGSSSSGSSSSNSRTSSTSSTVSSSSY----SSSSGSSRTSSRSSSPKRKKRHSRS 561
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 39.3 bits (90), Expect = 0.006
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 14/120 (11%)
Query: 151 RQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDE---------- 200
+Q+E EK++ + + E E+ LE +E + E R +E
Sbjct: 439 KQMEEEKQQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKE 498
Query: 201 --EKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKK 258
EK S+ SSSG++SS S T S+ T+ SS+ SS++S++S K+KK
Sbjct: 499 HKEKEKQGRSRSGSSSSGSSSSNSRTSSTSS--TVSSSSYSSSSGSSRTSSRSSSPKRKK 556
Score = 36.6 bits (83), Expect = 0.040
Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)
Query: 140 QYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSREND 199
Q +R + + + E+ L+ E + E+ R E P +E
Sbjct: 446 QQTERVTKEMNEFIHKEQNSLSLLEAREADGDVVNEKKRTPNETTSVLEPKKEHKEKEKQ 505
Query: 200 EEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKS 259
+ + S G+ SS+ TSS SST+ S+ SS+S + SS+SS+ ++K+ +S
Sbjct: 506 GRSRSGSSSSGSSSSNSRTSSTSSTVSSSSY----SSSSGSSRTSSRSSSPKRKKRHSRS 561
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.008
Identities = 30/130 (23%), Positives = 56/130 (43%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTI-----GSSASVKRKESSQ 246
T+ S E D + + A S S +T S+SS+ S T GSS+S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 247 SSTQSKEKKKKKSALDEIMEIEEEKKRTART 277
SST S + +R +R+
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.008
Identities = 30/130 (23%), Positives = 56/130 (43%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTI-----GSSASVKRKESSQ 246
T+ S E D + + A S S +T S+SS+ S T GSS+S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 247 SSTQSKEKKKKKSALDEIMEIEEEKKRTART 277
SST S + +R +R+
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 38.9 bits (89), Expect = 0.008
Identities = 45/195 (23%), Positives = 80/195 (41%), Gaps = 38/195 (19%)
Query: 156 EKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKVTFNLSKGACSSS 215
EK+KK+ D + Q R K P E S++ + SSS
Sbjct: 145 EKRKKKSRKDTSRNCSASTSQGR-----KASTAPGAEERSKQKARRRTR--------SSS 191
Query: 216 GATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALD------EIMEIE- 268
++SS SS+ S+ + SS+ ++K + K+KKK+K E ++E
Sbjct: 192 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 251
Query: 269 --------------EEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTA 314
EE+ TD +K +TK E++ +++I+++V+D T
Sbjct: 252 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTK---EEWDARQSIIRKVVDPETG 308
Query: 315 VVKMIDSGDKLKLDQ 329
++I GD L++
Sbjct: 309 RTRLI-KGDGEVLEE 322
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.008
Identities = 30/130 (23%), Positives = 56/130 (43%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTI-----GSSASVKRKESSQ 246
T+ S E D + + A S S +T S+SS+ S T GSS+S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 247 SSTQSKEKKKKKSALDEIMEIEEEKKRTART 277
SST S + +R +R+
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 38.9 bits (89), Expect = 0.008
Identities = 30/130 (23%), Positives = 56/130 (43%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 30.8 bits (68), Expect = 2.2
Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 5/91 (5%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTI-----GSSASVKRKESSQ 246
T+ S E D + + A S S +T S+SS+ S T GSS+S S
Sbjct: 49 TKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS 108
Query: 247 SSTQSKEKKKKKSALDEIMEIEEEKKRTART 277
SST S + +R +R+
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|239745079 PREDICTED: Putative golgin subfamily A member 6-like
protein 6 [Homo sapiens]
Length = 724
Score = 38.5 bits (88), Expect = 0.011
Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 20/211 (9%)
Query: 129 KVDETPKGW-YIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQE 187
K+ E + W + I E IR+Q E ++++ + D+E+ + EE+V R +E++
Sbjct: 531 KIREQEEIWRQKEKIHEQEEKIRKQEEKMWRQEEKMHDQEEKIREQEEKVWR----QEEK 586
Query: 188 VPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQS 247
+ E RE EEK+ T + +G K ++ +E
Sbjct: 587 IREQEEKIRE-QEEKIR--------EQEEMTQEQEEKMGEQEEKMCEQEEKMQEQEEKMR 637
Query: 248 STQSK--EKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIV 305
+ K E++KK +E + +EE + W Q E + + +K+ E+ K +
Sbjct: 638 RQEEKIREQEKKIREQEEKIREQEEMMQEQEEKMWEQEEKMCE-QEEKMQEQEEKMR--- 693
Query: 306 KEVIDKYTAVVKMIDSGDKLKLDQTHLETVI 336
++ + V++ +K++ Q HLE I
Sbjct: 694 RQEEKMWEQEVRLRQQEEKMQEHQEHLEAAI 724
Score = 35.4 bits (80), Expect = 0.090
Identities = 58/280 (20%), Positives = 115/280 (41%), Gaps = 27/280 (9%)
Query: 53 QLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQW 112
+LLL + Q D+ +E ++ +L +V N ++N +E W
Sbjct: 316 KLLLPQQQLQAEADHLGKELQSVSAKL------QAQVEENELWNRLNQQQEE-----KMW 364
Query: 113 ETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKF 172
+W E + E + I E +RRQ E+ +K++ + +E+
Sbjct: 365 RQEEKIQEW---EEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWE 421
Query: 173 IEEQVRRGLEGKEQEVPTFTELSRE-NDEEKVTFNLSKGACSSSGATSSKSSTLGPSALK 231
EE++RR E ++ EL + +++EK+ K K +
Sbjct: 422 KEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWR 481
Query: 232 TIGSSASVKRKESSQSSTQSKEKK-KKKSALDEIMEIEEEKKRTARTDYWLQPEII---V 287
K +E + + +EK +++ + E +I EE+KR + + W Q E I
Sbjct: 482 Q-----EEKIREQEEKIREQEEKMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQE 536
Query: 288 KIITKKLGEKYHKKKAIVKEVIDK-YTAVVKMIDSGDKLK 326
+I +K EK H+++ +++ +K + KM D +K++
Sbjct: 537 EIWRQK--EKIHEQEEKIRKQEEKMWRQEEKMHDQEEKIR 574
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/130 (23%), Positives = 55/130 (42%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSST-LGPSALKTIGSSASVKRKESSQSSTQ 250
+E R D+ + + S G+ S+ +SS SS+ S + GSS+S S SST
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
Query: 251 SKEKKKKKSALDEIMEIEEEKKRTART 277
S + +R +R+
Sbjct: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/130 (23%), Positives = 55/130 (42%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSST-LGPSALKTIGSSASVKRKESSQSSTQ 250
+E R D+ + + S G+ S+ +SS SS+ S + GSS+S S SST
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
Query: 251 SKEKKKKKSALDEIMEIEEEKKRTART 277
S + +R +R+
Sbjct: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/130 (23%), Positives = 55/130 (42%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSST-LGPSALKTIGSSASVKRKESSQSSTQ 250
+E R D+ + + S G+ S+ +SS SS+ S + GSS+S S SST
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
Query: 251 SKEKKKKKSALDEIMEIEEEKKRTART 277
S + +R +R+
Sbjct: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 38.5 bits (88), Expect = 0.011
Identities = 30/130 (23%), Positives = 55/130 (42%)
Query: 144 RDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
R P +R+ ++K K D+ T + E+ R K + + +R
Sbjct: 24 RAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTS 83
Query: 204 TFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSSTQSKEKKKKKSALDE 263
+ S SSSG++SS +S+ S+ + SS+S S S + +++ +S
Sbjct: 84 SSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKP 143
Query: 264 IMEIEEEKKR 273
E+E+KR
Sbjct: 144 PKRDEKERKR 153
Score = 29.6 bits (65), Expect = 4.9
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 192 TELSRENDEEKVTFNLSKGACSSSGATSSKSST-LGPSALKTIGSSASVKRKESSQSSTQ 250
+E R D+ + + S G+ S+ +SS SS+ S + GSS+S S SST
Sbjct: 53 SEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTS 112
Query: 251 SKEKKKKKSALDEIMEIEEEKKRTART 277
S + +R +R+
Sbjct: 113 RSSSSSSSSGSPSPSRRRHDNRRRSRS 139
>gi|222446603 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 668
Score = 38.1 bits (87), Expect = 0.014
Identities = 58/278 (20%), Positives = 112/278 (40%), Gaps = 24/278 (8%)
Query: 53 QLLLASENPQQFMDYFSEEFRNDFLELLRRRFGTKRVHNNIVYNEYISHREHIHMNATQW 112
+LLL + Q D+ +E ++ +L +V N ++N +E W
Sbjct: 255 KLLLPQQQLQAEADHLGKELQSVSAKL------QAQVEENELWNRLNQQQEE-----KMW 303
Query: 113 ETLTDFTKWLGREGLCKVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKF 172
+W E + E + I E +RRQ E+ +K++ + +E+
Sbjct: 304 RQEEKIQEW---EEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWE 360
Query: 173 IEEQVRRGLEGKEQEVPTFTELSRE-NDEEKVTFNLSKGACSSSGATSSKSSTLGPSALK 231
EE++RR E ++ EL + +++EK+ K K +
Sbjct: 361 KEEKMRRLEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQEQEAKMWR 420
Query: 232 TIGSSASVKRKESSQSSTQSKEKKKKKSALDEIMEIEEEKKRTARTDYWLQPEII---VK 288
R++ + Q K+ +++ + E +I EE+KR + + W Q E I +
Sbjct: 421 ----QEEKIREQEEKIREQEKKMWRQEEKIHEQEKIREEEKRQEQEEMWRQEEKIREQEE 476
Query: 289 IITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLK 326
I +K EK H+++ I K+ + KM D +K++
Sbjct: 477 IWRQK--EKMHEQEKIRKQEEKVWRQEEKMHDQEEKIR 512
Score = 31.6 bits (70), Expect = 1.3
Identities = 38/210 (18%), Positives = 87/210 (41%), Gaps = 13/210 (6%)
Query: 129 KVDETPKGWYIQYIDRDPETIRRQLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEV 188
K+ E + W + + E IR+Q E ++++ + D+E+ + EE++ R E ++
Sbjct: 470 KIREQEEIWRQKEKMHEQEKIRKQEEKVWRQEEKMHDQEEKIREQEEKMWRQEEKIREQE 529
Query: 189 PTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSS 248
E + E++ + + + K ++ ++
Sbjct: 530 EKIREQEEKIREQEEMMQEQEEKMGEQEEKMQEQEKMRRQEEKIREQEEKIREQKEKIRE 589
Query: 249 TQSK--EKKKKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVK 306
+ K E+++K +E+M+ +EEK W Q E + + +K+ E+ K + +
Sbjct: 590 QEEKIWEQEEKIREQEEMMQEQEEK-------MWEQEEKMCE-QEEKMQEQEEKMR---R 638
Query: 307 EVIDKYTAVVKMIDSGDKLKLDQTHLETVI 336
+ + V++ +K++ Q HLE I
Sbjct: 639 QEEKMWEQEVRLRQQEEKMQEHQEHLEAAI 668
>gi|109637763 calpastatin isoform h [Homo sapiens]
Length = 769
Score = 38.1 bits (87), Expect = 0.014
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 184 KEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKE 243
K E P+ + +DE+K A S + SS++ G ++ + +S+ K
Sbjct: 30 KTSESPSKPGEKKGSDEKK--------AASLGSSQSSRTYAGGTASATKVSASSGATSKS 81
Query: 244 SSQSSTQSKEKK---KKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHK 300
SS + T++K K +KKS ++ + E+K + + +P+ + K + H
Sbjct: 82 SSMNPTETKAVKTEPEKKSQSTKLSVVHEKKSQEGKPKEHTEPKSLPKQASDTGSNDAHN 141
Query: 301 KKAI 304
KKA+
Sbjct: 142 KKAV 145
>gi|109637757 calpastatin isoform e [Homo sapiens]
Length = 756
Score = 38.1 bits (87), Expect = 0.014
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 11/124 (8%)
Query: 184 KEQEVPTFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKE 243
K E P+ + +DE+K A S + SS++ G ++ + +S+ K
Sbjct: 30 KTSESPSKPGEKKGSDEKK--------AASLGSSQSSRTYAGGTASATKVSASSGATSKS 81
Query: 244 SSQSSTQSKEKK---KKKSALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHK 300
SS + T++K K +KKS ++ + E+K + + +P+ + K + H
Sbjct: 82 SSMNPTETKAVKTEPEKKSQSTKLSVVHEKKSQEGKPKEHTEPKSLPKQASDTGSNDAHN 141
Query: 301 KKAI 304
KKA+
Sbjct: 142 KKAV 145
>gi|38569484 kinesin family member 21A [Homo sapiens]
Length = 1661
Score = 38.1 bits (87), Expect = 0.014
Identities = 43/194 (22%), Positives = 78/194 (40%), Gaps = 16/194 (8%)
Query: 139 IQYIDRDPETIRRQLELEKKKKQ---------DLDDEEKTAKFIEEQVRRGLEGKEQEVP 189
I+ ID + + + EK+KK+ D D E+K K + E+ LE +E +
Sbjct: 535 IEIIDLAKKDLEKLKRKEKRKKKSVAGKEDNTDTDQEKKEEKGVSERENNELEVEESQEV 594
Query: 190 TFTELSRENDEEKVTFNLSKGACSSSGATSSKSSTLGPSALKTIGSSASVKRKESSQSST 249
+ E E +EE+ ++ G S + S + L I ++K+K +
Sbjct: 595 SDHE-DEEEEEEEEEDDIDGGESSDESDSESDEKANYQADLANITCEIAIKQKLIDELEN 653
Query: 250 QSKEKKKKKSALDEIMEIEEEKKRTAR--TDYWLQ----PEIIVKIITKKLGEKYHKKKA 303
K + K +E + + + K R + D LQ E + KK+ +Y KK
Sbjct: 654 SQKRLQTLKKQYEEKLMMLQHKIRDTQLERDQVLQNLGSVESYSEEKAKKVRSEYEKKLQ 713
Query: 304 IVKEVIDKYTAVVK 317
+ + + + A K
Sbjct: 714 AMNKELQRLQAAQK 727
>gi|6912482 leucine zipper-EF-hand containing transmembrane protein
1 [Homo sapiens]
Length = 739
Score = 37.4 bits (85), Expect = 0.024
Identities = 43/192 (22%), Positives = 90/192 (46%), Gaps = 10/192 (5%)
Query: 146 PETIRR--QLELEKKKKQDLDDEEKTAKFIEEQVRRGLEGKEQEVPTFTELSRENDEEKV 203
PE + + Q+++ + + + +D++ K ++E+ E +E+E+ +E++++ + E+V
Sbjct: 441 PEIVAKEAQVKVAEVEGEQVDNKAKLEATLQEEAAIQQEHREKELQKRSEVAKDFEPERV 500
Query: 204 TFNLSKGACSSSGA---TSSKSSTLGPSA--LKTIGSSASVKRKESSQSSTQSKEKKKKK 258
+ T +S TL +A L+ + K + S SK +++KK
Sbjct: 501 VAAPQRPGTEPQPEMPDTVLQSETLKDTAPVLEGLKEEEITKEEIDILSDACSKLQEQKK 560
Query: 259 SALDEIMEIEEEKKRTARTDYWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKM 318
S E E+E K+ DY + I K ++K EKY ++ K + + ++
Sbjct: 561 SLTKEKEELELLKEDV--QDYSEDLQEIKKELSKTGEEKYVEESKASKRLTKRVQQMIGQ 618
Query: 319 IDS-GDKLKLDQ 329
ID +L++DQ
Sbjct: 619 IDGLISQLEMDQ 630
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,791,326
Number of Sequences: 37866
Number of extensions: 685754
Number of successful extensions: 5996
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 369
Number of HSP's that attempted gapping in prelim test: 4609
Number of HSP's gapped (non-prelim): 1453
length of query: 393
length of database: 18,247,518
effective HSP length: 104
effective length of query: 289
effective length of database: 14,309,454
effective search space: 4135432206
effective search space used: 4135432206
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.