Guide to the Human Genome
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Name: C8orf33 Sequence: fasta or formatted (229aa) NCBI GI: 12751497
Description:

hypothetical protein LOC65265

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         35           4
 C cysteine            2.6          6           1
 D aspartate           2.6          6           1
 E glutamate           7.4         17           2
 F phenylalanine       2.2          5           2
 G glycine             6.6         15           2
 H histidine           1.3          3           1
 I isoleucine          1.3          3           1
 K lysine              7.4         17           3
 L leucine             8.3         19           1
 M methionine          1.7          4           1
 N asparagine          2.6          6           1
 P proline             7.9         18           1
 Q glutamine           6.6         15           2
 R arginine            9.6         22           1
 S serine              6.6         15           2
 T threonine           4.4         10           1
 V valine              3.5          8           1
 W tryptophan          1.3          3           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC65265 
MARCKS                0.027   myristoylated alanine-rich protein kinase C substra...
MN1                   0.027   meningioma  1 
C1orf198              0.023   hypothetical protein LOC84886 isoform 3 
C1orf198              0.023   hypothetical protein LOC84886 isoform 2 
C1orf198              0.023   hypothetical protein LOC84886 isoform 1 
SRRM2                 0.018   splicing coactivator subunit SRm300 
CCDC86                0.018   coiled-coil domain containing 86 
NMT2                  0.018   N-myristoyltransferase 2 
EPB41L2               0.018   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.018   erythrocyte membrane protein band 4.1-like 2 isofor...
EPB41L2               0.018   erythrocyte membrane protein band 4.1-like 2 isoform ...
EVC2                  0.018   limbin 
GPATCH8               0.018   G patch domain containing 8 
MYH9                  0.016   myosin, heavy polypeptide 9, non-muscle 
LOC100289065          0.016   PREDICTED: hypothetical protein 
LOC100289065          0.016   PREDICTED: hypothetical protein XP_002343789 
IGFBPL1               0.016   insulin-like growth factor binding protein-like 1 [H...
SIX5                  0.016   sine oculis homeobox homolog 5 
LOC348751             0.016   PREDICTED: hypothetical protein 
LOC348751             0.016   PREDICTED: hypothetical protein isoform 4 
LOC348751             0.016   PREDICTED: hypothetical protein isoform 2 
MARK2                 0.016   MAP/microtubule affinity-regulating kinase 2 isoform...
PNPLA6                0.016   patatin-like phospholipase domain containing 6 [Hom...
MARK2                 0.014   MAP/microtubule affinity-regulating kinase 2 isofor...
CEP250                0.014   centrosomal protein 2 
STAB1                 0.014   stabilin 1 precursor 
BRD7                  0.014   bromodomain containing 7 
NCAN                  0.014   chondroitin sulfate proteoglycan 3 
TCERG1                0.014   transcription elongation regulator 1 isoform 2 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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