Guide to the Human Genome
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Name: LOC645399 Sequence: fasta or formatted (426aa) NCBI GI: 239741055
Description:

PREDICTED: similar to PRAME family member 10

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         19           2
 C cysteine            3.1         13           2
 D aspartate           4.0         17           1
 E glutamate           6.3         27           1
 F phenylalanine       4.9         21           2
 G glycine             3.8         16           1
 H histidine           2.3         10           1
 I isoleucine          3.1         13           1
 K lysine              5.2         22           2
 L leucine            17.4         74           2
 M methionine          3.3         14           1
 N asparagine          2.6         11           1
 P proline             6.3         27           1
 Q glutamine           4.2         18           1
 R arginine            7.5         32           2
 S serine              7.3         31           2
 T threonine           4.9         21           2
 V valine              4.9         21           1
 W tryptophan          2.1          9           1
 Y tyrosine            2.3         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to PRAME family member 10 
LOC645382             0.994   PREDICTED: similar to PRAME family member 10 
PRAMEF10              0.949   PRAME family member 10 
PRAMEF17              0.845   PRAME family member 17 
PRAMEF16              0.843   PRAME family member 16 
PRAMEF22              0.612   PRAME family member 22 
PRAMEF18              0.606   PRAME family member 18 
PRAMEF3               0.605   PRAME family member 3 
PRAMEF19              0.602   PRAME family member 19 
PRAMEF14              0.593   PRAME family member 14 
PRAMEF1               0.578   PRAME family member 1 
PRAMEF13              0.569   PRAME family member 13 
PRAMEF2               0.551   PRAME family member 2 
PRAMEF25              0.528   PREDICTED: PRAME family member 25-like 
LOC729516             0.467   PREDICTED: similar to Putative PRAME family member ...
PRAMEF8               0.467   PRAME family member 8 
PRAMEF12              0.466   PRAME family member 12 
PRAMEF7               0.464   PRAME family member 7 
PRAMEF20              0.439   PRAME family member 20 
PRAMEF21              0.439   PRAME family member 21 
PRAMEF15              0.421   PRAME family member 15 
PRAMEF9               0.421   PRAME family member 9 
PRAMEF5               0.419   PRAME family member 5 
PRAMEF6               0.419   PRAME family member 6 
PRAMEF23              0.418   PREDICTED: PRAME family member 23 
PRAMEF11              0.413   PREDICTED: PRAME family member 11 
PRAMEF4               0.411   PRAME family member 4 
PRAMEF11              0.359   PRAME family member 11 
PRAME                 0.355   preferentially expressed antigen in melanoma 
PRAME                 0.355   preferentially expressed antigen in melanoma 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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