Search of human proteins with 12707580

Search of human proteins with 12707580

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12707580 paired-like homeobox 2b [Homo sapiens]
         (314 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12707580 paired-like homeobox 2b [Homo sapiens]                    633   0.0  
gi|46249382 paired-like homeobox 2a [Homo sapiens]                    280   2e-75
gi|122937321 UNC homeobox [Homo sapiens]                              118   8e-27
gi|20070107 orthodenticle homeobox 1 [Homo sapiens]                   116   3e-26
gi|24497589 aristaless related homeobox [Homo sapiens]                112   3e-25
gi|4557489 cone-rod homeobox protein [Homo sapiens]                   111   9e-25
gi|122937484 dorsal root ganglia homeobox [Homo sapiens]              110   2e-24
gi|7706659 paired related homeobox 2 [Homo sapiens]                   108   5e-24
gi|113204604 aristaless-like homeobox 3 [Homo sapiens]                108   8e-24
gi|126116581 retina and anterior neural fold homeobox [Homo sapi...   107   1e-23
gi|55743092 aristaless-like homeobox 4 [Homo sapiens]                 107   1e-23
gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]   103   2e-22
gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo sapi...   103   2e-22
gi|4505619 paired box 7 isoform 1 [Homo sapiens]                      102   3e-22
gi|7524359 paired box 7 isoform 2 [Homo sapiens]                      102   3e-22
gi|207029223 paired box 7 isoform 3 [Homo sapiens]                    102   3e-22
gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]            102   3e-22
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap...   102   3e-22
gi|14149760 orthopedia homeobox [Homo sapiens]                        102   3e-22
gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]     102   6e-22
gi|4826912 paired-like homeodomain 3 [Homo sapiens]                   101   8e-22
gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]                100   1e-21
gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]                 100   1e-21
gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]                 100   1e-21
gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]                 100   1e-21
gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]                 100   1e-21
gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]                  100   1e-21
gi|34365783 visual system homeobox 2 [Homo sapiens]                    97   2e-20
gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]          97   2e-20
gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Hom...    96   5e-20

>gi|12707580 paired-like homeobox 2b [Homo sapiens]
          Length = 314

 Score =  633 bits (1632), Expect = 0.0
 Identities = 314/314 (100%), Positives = 314/314 (100%)

Query: 1   MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSL 60
           MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSL
Sbjct: 1   MYKMEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSGCPSL 60

Query: 61  TPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAET 120
           TPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAET
Sbjct: 61  TPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAET 120

Query: 121 HYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSR 180
           HYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSR
Sbjct: 121 HYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSR 180

Query: 181 DDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGG 240
           DDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGG
Sbjct: 181 DDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGG 240

Query: 241 AAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR 300
           AAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR
Sbjct: 241 AAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR 300

Query: 301 PNGAKAALVKSSMF 314
           PNGAKAALVKSSMF
Sbjct: 301 PNGAKAALVKSSMF 314


>gi|46249382 paired-like homeobox 2a [Homo sapiens]
          Length = 284

 Score =  280 bits (715), Expect = 2e-75
 Identities = 171/311 (54%), Positives = 193/311 (62%), Gaps = 46/311 (14%)

Query: 4   MEYSYLNSSAYESCMAGMDTSSLASAYADFSSCSQASGFQYNPIRTTFGATSG-CPSLTP 62
           M+YSYLNS  Y+SC+A M+    ASAY DF +CSQ  GFQY+P+R  F A    CP+L  
Sbjct: 1   MDYSYLNS--YDSCVAAME----ASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGS 54

Query: 63  GSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHY 122
            +C+LG LRDHQ +PY+AVPYK F +  GL+EKRKQRRIRTTFTSAQLKELERVFAETHY
Sbjct: 55  SNCALGALRDHQPAPYSAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHY 114

Query: 123 PDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAA-AAAAAKNGSSGKKSDSSRD 181
           PDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAA+A  AA A     G+   SS D
Sbjct: 115 PDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAASAKGAAGAAGAKKGEARCSSED 174

Query: 182 DESKEAK-STDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPG-GPGGEPGKG 239
           D+SKE+  S  PDST    P P P             PSP      +GPG GPG +P KG
Sbjct: 175 DDSKESTCSPTPDSTASLPPPPAP-----GLASPRLSPSPLPVALGSGPGPGPGPQPLKG 229

Query: 240 GAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQG-------WAPGPGPITSIPDSLGGPFA 292
                         A  A  AGG    GGPG G       W P         +S  GPF+
Sbjct: 230 --------------ALWAGVAGG--GGGGPGAGAAELLKAWQPA--------ESGPGPFS 265

Query: 293 SVLSSLQRPNG 303
            VLSS  R  G
Sbjct: 266 GVLSSFHRKPG 276


>gi|122937321 UNC homeobox [Homo sapiens]
          Length = 531

 Score =  118 bits (295), Expect = 8e-27
 Identities = 93/266 (34%), Positives = 117/266 (43%), Gaps = 69/266 (25%)

Query: 60  LTPGSCSLGTLRDHQSSPYAAVPYKLFTDHGGLNEKR---KQRRIRTTFTSAQLKELERV 116
           L P +C +G   D Q       P+KL +D G  +++    K+RR RT FT  QL+ELE+ 
Sbjct: 74  LLPAACGVGG--DGQ-------PFKL-SDSGDPDKESPGCKRRRTRTNFTGWQLEELEKA 123

Query: 117 FAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNG----SS 172
           F E+HYPD++ RE LAL++DL E+RVQVWFQNRRAK+RK+E         A N      S
Sbjct: 124 FNESHYPDVFMREALALRLDLVESRVQVWFQNRRAKWRKKENTKKGPGRPAHNSHPTTCS 183

Query: 173 GKKSD--------------SSRDDESK------------------EAKSTDPDSTGG--- 197
           G+  D                R  E K                   A S+D DS GG   
Sbjct: 184 GEPMDPEEIARKELEKMEKKKRKHEKKLLKSQGRHLHSPGGLSLHSAPSSDSDSGGGGLS 243

Query: 198 -----PGPNPNPTPSCGANGGGGGGPSPAGAPGAAGP------------GGPGGEPGKGG 240
                P P     P   A+G  G  P+P G P A G              GP   PG+  
Sbjct: 244 PEPPEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPA 303

Query: 241 AAAAAAAAAAAAAAAAAAAAGGLAAA 266
              AA+    AA AA    A GL  A
Sbjct: 304 DKDAASCGPGAAVAAVERGAAGLPKA 329



 Score = 37.7 bits (86), Expect = 0.013
 Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 200 PNPNPTPSCGANGGGGGGPSPAGA----PGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAA 255
           P P    S GA  G GG P  A A       A PG P   P      A+AAA        
Sbjct: 417 PAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPGAPAPAPAPFRDLASAAATEGGGGDC 476

Query: 256 AAAAAGGLAAAGGPGQGWAPGPGPITSI--PDSLGGPFASVLSSLQRPNG 303
           A A   G  A   P     PGP P +    P + G P     +    P G
Sbjct: 477 ADAGTAG-PAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAGPSPPEG 525



 Score = 37.0 bits (84), Expect = 0.023
 Identities = 34/106 (32%), Positives = 37/106 (34%), Gaps = 21/106 (19%)

Query: 206 PSCGANGGGGGGPSPAGAPGA-----AGP--------GGPGGEPGKGGAAAAAAAAAAAA 252
           P     GG G  P+P  AP A     A P         GPGG P    A  +  A A+  
Sbjct: 392 PQAALKGGAGLEPAPKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVASPG 451

Query: 253 AAAAAAA-----AGGLAAAGGPG---QGWAPGPGPITSIPDSLGGP 290
           A A A A     A   A  GG G        GP P    P    GP
Sbjct: 452 APAPAPAPFRDLASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGP 497



 Score = 33.1 bits (74), Expect = 0.33
 Identities = 31/108 (28%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 159 AAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPG-PNPNPTP------SCGAN 211
           A A   A     S G  S      +S  A+ + PD+   PG P P P P      +    
Sbjct: 412 APAVPPAPPAQASFGAFSGPGGAPDSAFARRS-PDAVASPGAPAPAPAPFRDLASAAATE 470

Query: 212 GGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAA 259
           GGGG       A  A  P  P   PG    + A   A        AAA
Sbjct: 471 GGGGDCADAGTAGPAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAA 518



 Score = 31.6 bits (70), Expect = 0.96
 Identities = 29/112 (25%), Positives = 41/112 (36%), Gaps = 10/112 (8%)

Query: 192 PDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAA 251
           P    G GP P P      +    G       PGAA      G  G   A+  +  +  +
Sbjct: 287 PSQRSGAGPQPRPGRPADKDAASCG-------PGAAVAAVERGAAGLPKASPFSVESLLS 339

Query: 252 AAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQRPNG 303
            +     AA   AAA   G  +APG   +   P +L G    +L  + +P G
Sbjct: 340 DSPPRRKAASNAAAAAAAGLDFAPG---LPCAPRTLIGKGHFLLYPITQPLG 388



 Score = 29.3 bits (64), Expect = 4.7
 Identities = 23/73 (31%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 163 AAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAG 222
           A+AAA  G  G  +D+     +    +        P P P P P   A      G    G
Sbjct: 464 ASAAATEGGGGDCADAGTAGPAPPPPA--------PSPRPGPRPPSPAEEPATCGVPEPG 515

Query: 223 APGAAGPGGPGGE 235
           A  AAGP  P GE
Sbjct: 516 A--AAGPSPPEGE 526


>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
          Length = 354

 Score =  116 bits (290), Expect = 3e-26
 Identities = 84/217 (38%), Positives = 112/217 (51%), Gaps = 32/217 (14%)

Query: 96  RKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRK 155
           RKQRR RTTFT +QL  LE +FA+T YPDI+ REE+ALKI+L E+RVQVWF+NRRAK R+
Sbjct: 36  RKQRRERTTFTRSQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 95

Query: 156 QERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGGG 215
           Q+++            SG KS  ++   S   +S+  +S+G   P   P  S  A+    
Sbjct: 96  QQQS-----------GSGTKSRPAKKKSSPVRESSGSESSGQFTP---PAVSSSASSSSS 141

Query: 216 GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAP 275
              S A  P AA   G GG P             AAA++ +  AA  + +      G AP
Sbjct: 142 ASSSSAN-PAAAAAAGLGGNP------------VAAASSLSTPAASSIWSPASISPGSAP 188

Query: 276 GPGPITSIPDSLGGPFASVLSSLQRPNGAKAALVKSS 312
                 S+P+ L  P  S  S +QR   A AA   +S
Sbjct: 189 AS---VSVPEPLAAP--SNTSCMQRSVAAGAATAAAS 220


>gi|24497589 aristaless related homeobox [Homo sapiens]
          Length = 562

 Score =  112 bits (281), Expect = 3e-25
 Identities = 52/67 (77%), Positives = 62/67 (92%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFTS QL+ELER F +THYPD++TREELA+++DLTEARVQVWFQNRRAK+R
Sbjct: 325 KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQVWFQNRRAKWR 384

Query: 155 KQERAAA 161
           K+E+A A
Sbjct: 385 KREKAGA 391



 Score = 48.5 bits (114), Expect = 8e-06
 Identities = 37/77 (48%), Positives = 41/77 (53%), Gaps = 21/77 (27%)

Query: 231 GPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGP 290
           GPGG     GAAAAAAAAAAAAAAAA A AG         +G AP P P T+ P      
Sbjct: 90  GPGGGRLLQGAAAAAAAAAAAAAAAATATAG--------PRGEAPPPPPPTARPG----- 136

Query: 291 FASVLSSLQRPNGAKAA 307
                   +RP+GA AA
Sbjct: 137 --------ERPDGAGAA 145



 Score = 35.8 bits (81), Expect = 0.051
 Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 15/95 (15%)

Query: 210 ANGGGGGGPSPAGAPGAAGPGG-----------PGGEPGKGGAAAAAAAAAAAA---AAA 255
           A        + A A   AGP G           PG  P   GAAAAAAAAAAAA      
Sbjct: 102 AAAAAAAAAAAAAATATAGPRGEAPPPPPPTARPGERPDGAGAAAAAAAAAAAAWDTLKI 161

Query: 256 AAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGP 290
           + A    ++ +    +  AP   P  ++ D LGGP
Sbjct: 162 SQAPQVSISRSKSYRENGAPFVPPPPAL-DELGGP 195



 Score = 35.4 bits (80), Expect = 0.066
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGG 214
           + + A AAAAAAA   ++      S+  +   ++S      G   P   P P+    GG 
Sbjct: 138 RPDGAGAAAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENG--APFVPPPPALDELGGP 195

Query: 215 GGGPSPAGAPGAAGPGGPGGEPGKGG 240
           GG   P    G A  GGPG  P  GG
Sbjct: 196 GGVTHPEERLGVA--GGPGSAPAAGG 219



 Score = 34.3 bits (77), Expect = 0.15
 Identities = 29/78 (37%), Positives = 34/78 (43%), Gaps = 11/78 (14%)

Query: 159 AAAAAAAAAKNGSSGKKSDS-----SRDDESKE--AKSTDP----DSTGGPGPNPNPTPS 207
           AAAAAAAAA    + K S +     SR    +E  A    P    D  GGPG   +P   
Sbjct: 145 AAAAAAAAAAAWDTLKISQAPQVSISRSKSYRENGAPFVPPPPALDELGGPGGVTHPEER 204

Query: 208 CGANGGGGGGPSPAGAPG 225
            G  GG G  P+  G  G
Sbjct: 205 LGVAGGPGSAPAAGGGTG 222


>gi|4557489 cone-rod homeobox protein [Homo sapiens]
          Length = 299

 Score =  111 bits (277), Expect = 9e-25
 Identities = 84/233 (36%), Positives = 110/233 (47%), Gaps = 30/233 (12%)

Query: 73  HQSSPYAAVPYKLFTDHGGLNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELA 132
           HQ+ PY + P             RKQRR RTTFT +QL+ELE +FA+T YPD+Y REE+A
Sbjct: 27  HQAVPYPSAP-------------RKQRRERTTFTRSQLEELEALFAKTQYPDVYAREEVA 73

Query: 133 LKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTD- 191
           LKI+L E+RVQVWF+NRRAK R+Q +           G   K   + R   +    STD 
Sbjct: 74  LKINLPESRVQVWFKNRRAKCRQQRQQQKQQQQPP--GGQAKARPAKRKAGTSPRPSTDV 131

Query: 192 -PDSTGGPGPNPNPTPSCGANGGGGGGPSPAGA------PGAAGPGGPGGEPGKGGAAAA 244
            PD  G       P P      G  G P+ A A      P +  P       G   +  +
Sbjct: 132 CPDPLGISDSYSPPLP------GPSGSPTTAVATVSIWSPASESPLPEAQRAGLVASGPS 185

Query: 245 AAAAAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGP-ITSIPDSLGGPFASVLS 296
             +A  A   A A+A     +A G    +  G  P ++ +   LGGP  S LS
Sbjct: 186 LTSAPYAMTYAPASAFCSSPSAYGSPSSYFSGLDPYLSPMVPQLGGPALSPLS 238


>gi|122937484 dorsal root ganglia homeobox [Homo sapiens]
          Length = 268

 Score =  110 bits (275), Expect = 2e-24
 Identities = 66/127 (51%), Positives = 81/127 (63%), Gaps = 16/127 (12%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           +RKQRR RTTFT  QL+ LE VFA+THYPD++TREELA+KI+LTEARVQVWFQNRRAK+R
Sbjct: 35  RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQVWFQNRRAKWR 94

Query: 155 KQERAAAAAAAAAK------------NGSSGKKSDSSRD-DESKEAKSTDPDSTGGPGPN 201
           K ER A+     AK            N +S    D +R   E+ EA+ +   + G  GP 
Sbjct: 95  KTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGDQARSKKEALEAQQSLGRTVGPAGPF 154

Query: 202 PNPTPSC 208
               PSC
Sbjct: 155 ---FPSC 158


>gi|7706659 paired related homeobox 2 [Homo sapiens]
          Length = 253

 Score =  108 bits (271), Expect = 5e-24
 Identities = 61/139 (43%), Positives = 83/139 (59%), Gaps = 14/139 (10%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           K+KQRR RTTF S+QL+ LERVF  THYPD + REELA +++L+EARVQVWFQNRRAKFR
Sbjct: 101 KKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNRRAKFR 160

Query: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGG 214
           + ERA  A+ +A+   S  +++ +     +    +  PD       +P  T         
Sbjct: 161 RNERAMLASRSASLLKSYSQEA-AIEQPVAPRPTALSPDYLSWTASSPYST--------- 210

Query: 215 GGGPSPAGAPGAAGPGGPG 233
                P  +PG++GP  PG
Sbjct: 211 ----VPPYSPGSSGPATPG 225


>gi|113204604 aristaless-like homeobox 3 [Homo sapiens]
          Length = 343

 Score =  108 bits (269), Expect = 8e-24
 Identities = 68/147 (46%), Positives = 85/147 (57%), Gaps = 11/147 (7%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           K K+RR RTTF++ QL+ELE+VF +THYPD+Y RE+LAL+ DLTEARVQVWFQNRRAK+R
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWR 209

Query: 155 KQERAAAAAA-----AAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGP---GPNPNPTP 206
           K+ER            AA + S   ++DS    ++    S    S GGP    P   P+P
Sbjct: 210 KRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSP 269

Query: 207 SCGANG---GGGGGPSPAGAPGAAGPG 230
                    G   G     AP AA PG
Sbjct: 270 CMSPYSHPHGSVAGFMGVPAPSAAHPG 296


>gi|126116581 retina and anterior neural fold homeobox [Homo
           sapiens]
          Length = 346

 Score =  107 bits (268), Expect = 1e-23
 Identities = 86/244 (35%), Positives = 113/244 (46%), Gaps = 40/244 (16%)

Query: 74  QSSPYAAVPYKLFTDHGGLNE----KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTRE 129
           ++ P   +P    T    L+E    K+K RR RTTFT+ QL ELER F ++HYPD+Y+RE
Sbjct: 108 EARPSPGLPVGPATGEAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSRE 167

Query: 130 ELALKIDLTEARVQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKS 189
           ELA K++L E RVQVWFQNRRAK+R+QE+            SS K  DS     S+    
Sbjct: 168 ELAGKVNLPEVRVQVWFQNRRAKWRRQEKLEV---------SSMKLQDSPLLSFSR---- 214

Query: 190 TDPDSTGGPGPNPNPTPSCGANGGGGGGPSPAGAP--GAAGPGGPGGE-------PGKGG 240
           + P +T  P          GA  G GGGP+    P     GP  PGG        PG G 
Sbjct: 215 SPPSATLSP---------LGAGPGSGGGPAGGALPLESWLGPPLPGGGATALQSLPGFGP 265

Query: 241 AAAAAAAAAAAAAAA-----AAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVL 295
            A +  A+            +     GL     P   +  GPG     P     P  S +
Sbjct: 266 PAQSLPASYTPPPPPPPFLNSPPLGPGLQPLAPPPPSYPCGPGFGDKFPLDEADPRNSSI 325

Query: 296 SSLQ 299
           ++L+
Sbjct: 326 AALR 329


>gi|55743092 aristaless-like homeobox 4 [Homo sapiens]
          Length = 411

 Score =  107 bits (267), Expect = 1e-23
 Identities = 65/164 (39%), Positives = 91/164 (55%), Gaps = 10/164 (6%)

Query: 93  NEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAK 152
           + K K+RR RTTFTS QL+ELE+VF +THYPD+Y RE+LA++ DLTEARVQVWFQNRRAK
Sbjct: 209 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAK 268

Query: 153 FRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTD-PDSTGGPGPNP------NPT 205
           +RK+ER            ++ +    +R +   + ++     + G   P P      +P 
Sbjct: 269 WRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVPCDPV 328

Query: 206 PSC---GANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAA 246
           P+C    A+  G G  S       +G G   G+   G    AA+
Sbjct: 329 PACMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAAS 372


>gi|5902024 paired mesoderm homeobox 1 isoform pmx-1a [Homo sapiens]
          Length = 217

 Score =  103 bits (257), Expect = 2e-22
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query: 94  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153
           +KRKQRR RTTF S+QL+ LERVF  THYPD + RE+LA +++LTEARVQVWFQNRRAKF
Sbjct: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149

Query: 154 RKQERAAAA 162
           R+ ERA  A
Sbjct: 150 RRNERAMLA 158


>gi|12707577 paired mesoderm homeobox 1 isoform pmx-1b [Homo
           sapiens]
          Length = 245

 Score =  103 bits (257), Expect = 2e-22
 Identities = 49/69 (71%), Positives = 58/69 (84%)

Query: 94  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153
           +KRKQRR RTTF S+QL+ LERVF  THYPD + RE+LA +++LTEARVQVWFQNRRAKF
Sbjct: 90  KKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKF 149

Query: 154 RKQERAAAA 162
           R+ ERA  A
Sbjct: 150 RRNERAMLA 158


>gi|4505619 paired box 7 isoform 1 [Homo sapiens]
          Length = 520

 Score =  102 bits (255), Expect = 3e-22
 Identities = 74/163 (45%), Positives = 87/163 (53%), Gaps = 23/163 (14%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELE+ F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGG 214
           KQ  A A   AA  +   G    +             PDST        PT +   +GG 
Sbjct: 274 KQ--AGANQLAAFNHLLPGGFPPTGMPTLPPYQL---PDST-------YPTTTISQDGGS 321

Query: 215 G-GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAA 256
               P P           P     +GG AAAAAAA  ++A  A
Sbjct: 322 TVHRPQPL----------PPSTMHQGGLAAAAAAADTSSAYGA 354


>gi|7524359 paired box 7 isoform 2 [Homo sapiens]
          Length = 518

 Score =  102 bits (255), Expect = 3e-22
 Identities = 74/163 (45%), Positives = 87/163 (53%), Gaps = 23/163 (14%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELE+ F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 271

Query: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGG 214
           KQ  A A   AA  +   G    +             PDST        PT +   +GG 
Sbjct: 272 KQ--AGANQLAAFNHLLPGGFPPTGMPTLPPYQL---PDST-------YPTTTISQDGGS 319

Query: 215 G-GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAA 256
               P P           P     +GG AAAAAAA  ++A  A
Sbjct: 320 TVHRPQPL----------PPSTMHQGGLAAAAAAADTSSAYGA 352


>gi|207029223 paired box 7 isoform 3 [Homo sapiens]
          Length = 505

 Score =  102 bits (255), Expect = 3e-22
 Identities = 74/163 (45%), Positives = 87/163 (53%), Gaps = 23/163 (14%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELE+ F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWR 273

Query: 155 KQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPNPNPTPSCGANGGG 214
           KQ  A A   AA  +   G    +             PDST        PT +   +GG 
Sbjct: 274 KQ--AGANQLAAFNHLLPGGFPPTGMPTLPPYQL---PDST-------YPTTTISQDGGS 321

Query: 215 G-GGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAA 256
               P P           P     +GG AAAAAAA  ++A  A
Sbjct: 322 TVHRPQPL----------PPSTMHQGGLAAAAAAADTSSAYGA 354


>gi|239754062 PREDICTED: orthopedia homeobox [Homo sapiens]
          Length = 325

 Score =  102 bits (255), Expect = 3e-22
 Identities = 83/226 (36%), Positives = 112/226 (49%), Gaps = 33/226 (14%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           ++KQ+R RT FT AQL ELER FA+THYPDI+ REELAL+I LTE+RVQVWFQNRRAK++
Sbjct: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160

Query: 155 KQERA--------------------AAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDS 194
           K+++                     +AAAAAAA  G S     S   ++++ A +  P  
Sbjct: 161 KRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDS---LCSFHANDTRWAAAAMPGV 217

Query: 195 TGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAA 254
           +  P P     P+ G         S      AAGP  P    G   + A +  A   +  
Sbjct: 218 SQLPLP-----PALGRQQAMAQSLSQCSL--AAGP--PPNSMGLSNSLAGSNGAGLQSHL 268

Query: 255 AAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR 300
              A   G+  A  PG     G   + S PDS      + ++SL+R
Sbjct: 269 YQPAFP-GMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRR 313


>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
           sapiens]
          Length = 184

 Score =  102 bits (255), Expect = 3e-22
 Identities = 73/194 (37%), Positives = 92/194 (47%), Gaps = 26/194 (13%)

Query: 87  TDHGGLNE-----KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEAR 141
           T+ GGL       K+K RR RTTFT+ QL +LER F  +HYPD+Y+REELA K+ L E R
Sbjct: 11  TEGGGLGPGEEAPKKKHRRNRTTFTTYQLHQLERAFEASHYPDVYSREELAAKVHLPEVR 70

Query: 142 VQVWFQNRRAKFRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDSTGGPGPN 201
           VQVWFQNRRAK+R+QER  + + A A   +       +       A S   +   GPGP 
Sbjct: 71  VQVWFQNRRAKWRRQERLESGSGAVA---APRLPEAPALPFARPPAMSLPLEPWLGPGP- 126

Query: 202 PNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAG 261
                           P+  G P   GP GPG +   G  A A   A   A   A+    
Sbjct: 127 ----------------PAVPGLPRLLGP-GPGLQASFGPHAFAPTFADGFALEEASLRLL 169

Query: 262 GLAAAGGPGQGWAP 275
               A    + W P
Sbjct: 170 AKEHAQALDRAWPP 183


>gi|14149760 orthopedia homeobox [Homo sapiens]
          Length = 325

 Score =  102 bits (255), Expect = 3e-22
 Identities = 83/226 (36%), Positives = 112/226 (49%), Gaps = 33/226 (14%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           ++KQ+R RT FT AQL ELER FA+THYPDI+ REELAL+I LTE+RVQVWFQNRRAK++
Sbjct: 101 QQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKWK 160

Query: 155 KQERA--------------------AAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPDS 194
           K+++                     +AAAAAAA  G S     S   ++++ A +  P  
Sbjct: 161 KRKKTTNVFRAPGTLLPTPGLPQFPSAAAAAAAAMGDS---LCSFHANDTRWAAAAMPGV 217

Query: 195 TGGPGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAA 254
           +  P P     P+ G         S      AAGP  P    G   + A +  A   +  
Sbjct: 218 SQLPLP-----PALGRQQAMAQSLSQCSL--AAGP--PPNSMGLSNSLAGSNGAGLQSHL 268

Query: 255 AAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSLQR 300
              A   G+  A  PG     G   + S PDS      + ++SL+R
Sbjct: 269 YQPAFP-GMVPASLPGPSNVSGSPQLCSSPDSSDVWRGTSIASLRR 313


>gi|154813201 cartilage paired-class homeoprotein 1 [Homo sapiens]
          Length = 326

 Score =  102 bits (253), Expect = 6e-22
 Identities = 47/62 (75%), Positives = 57/62 (91%)

Query: 97  KQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFRKQ 156
           K+RR RTTFTS QL+ELE+VF +THYPD+Y RE+LAL+ +LTEARVQVWFQNRRAK+RK+
Sbjct: 131 KKRRHRTTFTSLQLEELEKVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKR 190

Query: 157 ER 158
           ER
Sbjct: 191 ER 192


>gi|4826912 paired-like homeodomain 3 [Homo sapiens]
          Length = 302

 Score =  101 bits (252), Expect = 8e-22
 Identities = 80/198 (40%), Positives = 100/198 (50%), Gaps = 26/198 (13%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           K+KQRR RT FTS QL+ELE  F    YPD+ TREE+A+  +LTEARV+VWF+NRRAK+R
Sbjct: 59  KKKQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWR 118

Query: 155 KQERAAAA----AAAAAKNGSSGKKSDSSRDDES-----------KEAKSTDPDSTGGPG 199
           K+ER+  A     + AA  G      +      S             A  T P +     
Sbjct: 119 KRERSQQAELCKGSFAAPLGGLVPPYEEVYPGYSYGNWPPKALAPPLAAKTFPFAFNSVN 178

Query: 200 PNP---NPTPSCGANGGGGGGPSPAGAPGAA-GPGG----PGGEPGKGGAAAAAAAAAAA 251
             P    P  S  ++      PS A APG   GPG      GG PG   AA ++ A +  
Sbjct: 179 VGPLASQPVFSPPSSIAASMVPSAAAAPGTVPGPGALQGLGGGPPGLAPAAVSSGAVSCP 238

Query: 252 AAAAAAAAAGGLAAAGGP 269
            A+AAAAAA   AAA  P
Sbjct: 239 YASAAAAAA---AAASSP 253


>gi|188219638 paired box 3 isoform PAX3i [Homo sapiens]
          Length = 483

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 215 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 274

Query: 155 KQERA 159
           KQ  A
Sbjct: 275 KQAGA 279


>gi|31563348 paired box 3 isoform PAX3g [Homo sapiens]
          Length = 403

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 155 KQERA 159
           KQ  A
Sbjct: 276 KQAGA 280


>gi|31563346 paired box 3 isoform PAX3h [Homo sapiens]
          Length = 407

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 155 KQERA 159
           KQ  A
Sbjct: 276 KQAGA 280


>gi|31563344 paired box 3 isoform PAX3e [Homo sapiens]
          Length = 505

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 155 KQERA 159
           KQ  A
Sbjct: 276 KQAGA 280


>gi|31563342 paired box 3 isoform PAX3d [Homo sapiens]
          Length = 484

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 155 KQERA 159
           KQ  A
Sbjct: 276 KQAGA 280


>gi|31563340 paired box 3 isoform PAX3 [Homo sapiens]
          Length = 479

 Score =  100 bits (250), Expect = 1e-21
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRKQRR RTTFT+ QL+ELER F  THYPDIYTREELA +  LTEARVQVWF NRRA++R
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWR 275

Query: 155 KQERA 159
           KQ  A
Sbjct: 276 KQAGA 280


>gi|34365783 visual system homeobox 2 [Homo sapiens]
          Length = 361

 Score = 97.1 bits (240), Expect = 2e-20
 Identities = 46/80 (57%), Positives = 60/80 (75%)

Query: 94  EKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKF 153
           +KRK+RR RT FTS QL+ELE+ F E HYPD+Y RE LA+K +L E R+QVWFQNRRAK+
Sbjct: 144 KKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKW 203

Query: 154 RKQERAAAAAAAAAKNGSSG 173
           RK+E+    ++  A+ G  G
Sbjct: 204 RKREKCWGRSSVMAEYGLYG 223


>gi|11056038 visual system homeobox 1 isoform a [Homo sapiens]
          Length = 365

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 95  KRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAKFR 154
           KRK+RR RT FT+ QL+ELE+ F+E HYPD+Y RE LA+K +L E R+QVWFQNRRAK+R
Sbjct: 161 KRKKRRHRTVFTAHQLEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWR 220

Query: 155 KQERAAAAAAAAAKNGSSG 173
           K+E+    ++  A+ G  G
Sbjct: 221 KREKRWGGSSVMAEYGLYG 239


>gi|22218349 diencephalon/mesencephalon homeobox 1 isoform b [Homo
           sapiens]
          Length = 382

 Score = 95.5 bits (236), Expect = 5e-20
 Identities = 67/198 (33%), Positives = 96/198 (48%), Gaps = 17/198 (8%)

Query: 93  NEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQNRRAK 152
           ++ RKQRR RT FT+ QL+ LE+ F +THYPD+  RE LA+  +L EARVQVWF+NRRAK
Sbjct: 66  SQHRKQRRSRTAFTAQQLEALEKTFQKTHYPDVVMRERLAMCTNLPEARVQVWFKNRRAK 125

Query: 153 FRKQERAAAAAAAAAKNGSSGKKSDSSRDDESKEAKSTDPD-STGGPGPNPNPTPSCGAN 211
           FRK++R+        +     K+++ S  +   EA + D    T  P   P   P    +
Sbjct: 126 FRKKQRSLQKEQLQKQ-----KEAEGSHGEGKAEAPTPDTQLDTEQPPRLPGSDPPAELH 180

Query: 212 GGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAAAAAAAAAAAAAGGLAAAGGPGQ 271
                    + +  +A    P  +P +     A A    A  +  A + G     G P  
Sbjct: 181 --------LSLSEQSASESAPEDQPDREEDPRAGAEDPKAEKSPGADSKGLGCKRGSPK- 231

Query: 272 GWAPGPGPITSIPDSLGG 289
             A  PG +T  P + GG
Sbjct: 232 --ADSPGSLTITPVAPGG 247


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.310    0.126    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,504,902
Number of Sequences: 37866
Number of extensions: 1070545
Number of successful extensions: 54634
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 1139
Number of HSP's that attempted gapping in prelim test: 12048
Number of HSP's gapped (non-prelim): 17046
length of query: 314
length of database: 18,247,518
effective HSP length: 102
effective length of query: 212
effective length of database: 14,385,186
effective search space: 3049659432
effective search space used: 3049659432
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.