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Search of human proteins with 4504603
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens] 381 e-106
gi|28882045 interferon, epsilon [Homo sapiens] 114 4e-26
gi|4504593 interferon, alpha 16 [Homo sapiens] 103 9e-23
gi|4504605 interferon, omega 1 [Homo sapiens] 102 2e-22
gi|4504597 interferon, alpha 5 [Homo sapiens] 100 6e-22
gi|170763491 interferon, alpha 14 [Homo sapiens] 100 1e-21
gi|10880985 interferon, alpha 17 [Homo sapiens] 100 1e-21
gi|10835103 interferon, alpha 4 [Homo sapiens] 99 2e-21
gi|11067751 interferon, alpha 2 [Homo sapiens] 98 4e-21
gi|71143135 interferon, alpha 7 [Homo sapiens] 97 6e-21
gi|4504589 interferon, alpha 10 [Homo sapiens] 97 1e-20
gi|112789564 interferon kappa precursor [Homo sapiens] 96 2e-20
gi|169791013 interferon, alpha 21 [Homo sapiens] 93 1e-19
gi|11128015 interferon, alpha 6 [Homo sapiens] 92 3e-19
gi|13128950 interferon, alpha 1 [Homo sapiens] 91 6e-19
gi|194394174 interferon, alpha 13 precursor [Homo sapiens] 91 6e-19
gi|42476083 interferon, alpha 8 [Homo sapiens] 88 4e-18
gi|118766335 calcium binding protein 39-like [Homo sapiens] 30 1.2
gi|118766350 calcium binding protein 39-like [Homo sapiens] 30 1.2
gi|24497453 nucleoporin 88kDa [Homo sapiens] 30 1.6
gi|65301141 PH domain and leucine rich repeat protein phosphatas... 29 2.1
gi|4557535 solute carrier family 26, member 3 [Homo sapiens] 29 2.1
gi|118498356 kinectin 1 isoform a [Homo sapiens] 29 2.7
gi|118498368 kinectin 1 isoform c [Homo sapiens] 29 2.7
gi|33620775 kinectin 1 isoform a [Homo sapiens] 29 2.7
gi|98986459 jumonji domain containing 2A [Homo sapiens] 29 2.7
gi|157502184 kinesin family member 6 [Homo sapiens] 29 2.7
gi|109255239 centrosomal protein 63 isoform b [Homo sapiens] 28 3.5
gi|22095367 centrosomal protein 63 isoform a [Homo sapiens] 28 3.5
gi|109255236 centrosomal protein 63 isoform d [Homo sapiens] 28 3.5
>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
Length = 187
Score = 381 bits (978), Expect = e-106
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD 60
MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD
Sbjct: 1 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFD 60
Query: 61 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK 120
IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK
Sbjct: 61 IPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLK 120
Query: 121 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR 180
TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR
Sbjct: 121 TVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINR 180
Query: 181 LTGYLRN 187
LTGYLRN
Sbjct: 181 LTGYLRN 187
>gi|28882045 interferon, epsilon [Homo sapiens]
Length = 208
Score = 114 bits (286), Expect = 4e-26
Identities = 66/173 (38%), Positives = 98/173 (56%), Gaps = 1/173 (0%)
Query: 11 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNG-RLEYCLKDRMNFDIPEEIKQLQ 69
L+L STT S+ L+ F QR N + KLL +L ++ CL R NF +P++ Q
Sbjct: 11 LVLLASTTIFSLDLKLIIFQQRQVNQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQ 70
Query: 70 QFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEK 129
Q+QK ++EMLQ IF++FR + S GW E E L ++ Q+ +L+ ++ + EK
Sbjct: 71 QYQKGHTLAILHEMLQQIFSLFRANISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEK 130
Query: 130 EDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEILRNFYFINRLT 182
T G L +K Y+ RI YL+ ++YS CAW IV+VEI R +F+ LT
Sbjct: 131 LSGTLGSDNLRLQVKMYFRRIHDYLENQDYSTCAWAIVQVEISRCLFFVFSLT 183
>gi|4504593 interferon, alpha 16 [Homo sapiens]
Length = 189
Score = 103 bits (257), Expect = 9e-23
Identities = 52/142 (36%), Positives = 81/142 (57%), Gaps = 2/142 (1%)
Query: 47 GRLEY--CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETI 104
GR+ + CLKDR +F P+E+ QFQK A +EM+Q F +F SS W+ET+
Sbjct: 45 GRISHFSCLKDRYDFGFPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETL 104
Query: 105 VENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
++ ++ Q+N L+ + +++ E+ S L +++Y+ RI YL K+YS CAW
Sbjct: 105 LDKFYIELFQQLNDLEACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAW 164
Query: 165 TIVRVEILRNFYFINRLTGYLR 186
+VR EI+R+F F L LR
Sbjct: 165 EVVRAEIMRSFSFSTNLQKGLR 186
>gi|4504605 interferon, omega 1 [Homo sapiens]
Length = 195
Score = 102 bits (254), Expect = 2e-22
Identities = 49/136 (36%), Positives = 81/136 (59%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F P+E+ + Q QK ++EMLQ IF++F + SS WN T+++ L
Sbjct: 52 CLKDRRDFRFPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTG 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
++ Q+ HL+T L + + + + +L L+RY+ I YLK K+YS CAW +VR+EI
Sbjct: 112 LHQQLQHLETCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEI 171
Query: 172 LRNFYFINRLTGYLRN 187
+++ + + LR+
Sbjct: 172 MKSLFLSTNMQERLRS 187
>gi|4504597 interferon, alpha 5 [Homo sapiens]
Length = 189
Score = 100 bits (250), Expect = 6e-22
Identities = 51/135 (37%), Positives = 77/135 (57%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F P+E QFQK A ++EM+Q F +F SS W+ET+++
Sbjct: 52 CLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + +++ ED + S L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LYQQLNDLEACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+F L LR
Sbjct: 172 MRSFSLSANLQERLR 186
>gi|170763491 interferon, alpha 14 [Homo sapiens]
Length = 189
Score = 100 bits (248), Expect = 1e-21
Identities = 51/135 (37%), Positives = 78/135 (57%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F+ P+E QFQK A ++EM+Q F +F +SS W+ET++E
Sbjct: 52 CLKDRHDFEFPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
++ Q+N L+ + +++ E+ S L +K+Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LFQQMNDLEACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+ F L LR
Sbjct: 172 MRSLSFSTNLQKRLR 186
>gi|10880985 interferon, alpha 17 [Homo sapiens]
Length = 189
Score = 99.8 bits (247), Expect = 1e-21
Identities = 49/135 (36%), Positives = 78/135 (57%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F +P+E QFQK A ++EM+Q F +F + SS W ++++E
Sbjct: 52 CLKDRHDFGLPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N+L+ + +++ E+ S L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LYQQLNNLEACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+ F L LR
Sbjct: 172 MRSLSFSTNLQKILR 186
>gi|10835103 interferon, alpha 4 [Homo sapiens]
Length = 189
Score = 99.4 bits (246), Expect = 2e-21
Identities = 52/142 (36%), Positives = 80/142 (56%), Gaps = 2/142 (1%)
Query: 47 GRLEY--CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETI 104
GR+ + CLKDR +F PEE QFQK A ++EM+Q F +F + SS W +++
Sbjct: 45 GRISHFSCLKDRHDFGFPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSL 104
Query: 105 VENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
+E +Y Q+N L+ + +++ E+ S L +++Y+ RI YL K+YS CAW
Sbjct: 105 LEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAW 164
Query: 165 TIVRVEILRNFYFINRLTGYLR 186
+VR EI+R+ F L LR
Sbjct: 165 EVVRAEIMRSLSFSTNLQKRLR 186
>gi|11067751 interferon, alpha 2 [Homo sapiens]
Length = 188
Score = 98.2 bits (243), Expect = 4e-21
Identities = 56/143 (39%), Positives = 80/143 (55%), Gaps = 15/143 (10%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F P+E + QFQK + ++EM+Q IF +F SS W+ET+++
Sbjct: 52 CLKDRHDFGFPQE-EFGNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTE 110
Query: 112 VYHQINHLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
+Y Q+N L+ V E L KED S L +++Y+ RI YLK K+YS CAW
Sbjct: 111 LYQQLNDLEACVIQGVGVTETPLMKED-------SILAVRKYFQRITLYLKEKKYSPCAW 163
Query: 165 TIVRVEILRNFYFINRLTGYLRN 187
+VR EI+R+F L LR+
Sbjct: 164 EVVRAEIMRSFSLSTNLQESLRS 186
>gi|71143135 interferon, alpha 7 [Homo sapiens]
Length = 189
Score = 97.4 bits (241), Expect = 6e-21
Identities = 50/135 (37%), Positives = 75/135 (55%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR F PEE QFQK A ++EM+Q F +F + SS W ++++E
Sbjct: 52 CLKDRHEFRFPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + +++ E+ L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LYQQLNDLEACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+F F L LR
Sbjct: 172 MRSFSFSTNLKKGLR 186
>gi|4504589 interferon, alpha 10 [Homo sapiens]
Length = 189
Score = 96.7 bits (239), Expect = 1e-20
Identities = 49/135 (36%), Positives = 77/135 (57%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F IP+E QFQK A ++EM+Q F +F + SS W ++++E
Sbjct: 52 CLKDRHDFRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + +++ E+ S L +++Y+ RI YL ++YS CAW +VR EI
Sbjct: 112 LYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+ F L LR
Sbjct: 172 MRSLSFSTNLQKRLR 186
>gi|112789564 interferon kappa precursor [Homo sapiens]
Length = 207
Score = 95.5 bits (236), Expect = 2e-20
Identities = 68/200 (34%), Positives = 94/200 (47%), Gaps = 15/200 (7%)
Query: 1 MTNKCLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEY-CLKDRMNF 59
M KCL L+ F LS+ NLL R +Q + L ++ CL++ + F
Sbjct: 7 MIQKCLWLEILMGIFIAGTLSLDCNLLNVHLRRVTWQNLRHLSSMSNSFPVECLRENIAF 66
Query: 60 DIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHL 119
++P+E Q Q K D YEM F IF Q + W E ++ + + Q +L
Sbjct: 67 ELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFSQHTFKY-WKERHLKQIQIGLDQQAEYL 125
Query: 120 KTVLEE-KLEKEDFTRGK------------LMSSLHLKRYYGRILHYLKAKEYSHCAWTI 166
LEE K E ED K +SSL L+RY+ RI ++LK K+YS CAW I
Sbjct: 126 NQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEI 185
Query: 167 VRVEILRNFYFINRLTGYLR 186
VRVEI R Y+ + T R
Sbjct: 186 VRVEIRRCLYYFYKFTALFR 205
>gi|169791013 interferon, alpha 21 [Homo sapiens]
Length = 189
Score = 93.2 bits (230), Expect = 1e-19
Identities = 46/124 (37%), Positives = 72/124 (58%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F P+E QFQK A ++EM+Q F +F SS W ++++E
Sbjct: 52 CLKDRHDFGFPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+ Q+N L+ + +++ E+ + S L +K+Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LNQQLNDLEACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEI 171
Query: 172 LRNF 175
+R+F
Sbjct: 172 MRSF 175
>gi|11128015 interferon, alpha 6 [Homo sapiens]
Length = 189
Score = 92.0 bits (227), Expect = 3e-19
Identities = 48/135 (35%), Positives = 75/135 (55%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F P+E QFQK +A ++E++Q F +F SS W+E +++ L
Sbjct: 52 CLKDRHDFRFPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + +++ S L +++Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LYQQLNDLEACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+F L LR
Sbjct: 172 MRSFSSSRNLQERLR 186
>gi|13128950 interferon, alpha 1 [Homo sapiens]
Length = 189
Score = 90.9 bits (224), Expect = 6e-19
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CL DR +F P+E QFQK A ++E++Q IF +F SS W+E +++
Sbjct: 52 CLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTE 111
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + ++ + S L +K+Y+ RI YL K+YS CAW +VR EI
Sbjct: 112 LYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEI 171
Query: 172 LRNFYFINRLTGYLR 186
+R+ L LR
Sbjct: 172 MRSLSLSTNLQERLR 186
>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
Length = 190
Score = 90.9 bits (224), Expect = 6e-19
Identities = 47/135 (34%), Positives = 72/135 (53%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CL DR +F P+E QFQK A ++E++Q IF +F SS W+E +++
Sbjct: 53 CLMDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTE 112
Query: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171
+Y Q+N L+ + ++ + S L +K+Y+ RI YL K+YS CAW +VR EI
Sbjct: 113 LYQQLNDLEACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEI 172
Query: 172 LRNFYFINRLTGYLR 186
+R+ L LR
Sbjct: 173 MRSLSLSTNLQERLR 187
>gi|42476083 interferon, alpha 8 [Homo sapiens]
Length = 189
Score = 88.2 bits (217), Expect = 4e-18
Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 14/131 (10%)
Query: 52 CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111
CLKDR +F+ P+E +QFQK A ++EM+Q F +F SS +ET+++
Sbjct: 52 CLKDRHDFEFPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIE 111
Query: 112 VYHQINHLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164
+ Q+N L++ V+E L ED S L +++Y+ RI YL K+YS CAW
Sbjct: 112 LDQQLNDLESCVMQEVGVIESPLMYED-------SILAVRKYFQRITLYLTEKKYSSCAW 164
Query: 165 TIVRVEILRNF 175
+VR EI+R+F
Sbjct: 165 EVVRAEIMRSF 175
>gi|118766335 calcium binding protein 39-like [Homo sapiens]
Length = 337
Score = 30.0 bits (66), Expect = 1.2
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 30 LQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDI-------PEEIKQLQQFQKEDAALTIYE 82
L +S N+ ++ +L G L + DR NF I PE +K + ++ + +E
Sbjct: 216 LLQSENYVTKRQSLKLLGEL---ILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFE 272
Query: 83 MLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGK 136
F +F+ +S + IVE LL N I L + +E+ + E F K
Sbjct: 273 A----FHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEK 322
>gi|118766350 calcium binding protein 39-like [Homo sapiens]
Length = 337
Score = 30.0 bits (66), Expect = 1.2
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 14/114 (12%)
Query: 30 LQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDI-------PEEIKQLQQFQKEDAALTIYE 82
L +S N+ ++ +L G L + DR NF I PE +K + ++ + +E
Sbjct: 216 LLQSENYVTKRQSLKLLGEL---ILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFE 272
Query: 83 MLQNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGK 136
F +F+ +S + IVE LL N I L + +E+ + E F K
Sbjct: 273 A----FHVFKVFVASPHKTQPIVEILLKNQPKLIEFLSSFQKERTDDEQFADEK 322
>gi|24497453 nucleoporin 88kDa [Homo sapiens]
Length = 741
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 10/153 (6%)
Query: 30 LQRSSNFQCQKLLWQLNGRLEYCLKDRMNF-DIPEEIKQLQQFQKEDAALTIYEMLQNIF 88
+QR C + QL L YC ++R + ++ E + + KE I ++ +
Sbjct: 587 IQRRVKLLCDQKKKQLED-LSYCREERKSLREMAERLADKYEEAKEKQE-DIMNRMKKLL 644
Query: 89 AIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKR--- 145
F + +E ++ L + Q+ HL +++ K+D+ + K+ L L +
Sbjct: 645 HSFHSELPVLSDSERDMKKELQLIPDQLRHLGNAIKQVTMKKDYQQQKMEKVLSLPKPTI 704
Query: 146 ----YYGRILHYLKAKEYSHCAWTIVRVEILRN 174
Y + + + +E H + ++ +RN
Sbjct: 705 ILSAYQRKCIQSILKEEGEHIREMVKQINDIRN 737
>gi|65301141 PH domain and leucine rich repeat protein
phosphatase-like [Homo sapiens]
Length = 1323
Score = 29.3 bits (64), Expect = 2.1
Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 15/127 (11%)
Query: 11 LLLCFSTTALSMSYNLLGFLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQ 70
+LLC +T ++ + GF S + L CL +PEE+ LQQ
Sbjct: 316 ILLCEISTLTELNLSCNGFHDLPSQ------IGNLLNLQTLCLDGNFLTTLPEELGNLQQ 369
Query: 71 -------FQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVE--NLLANVYHQINHLKT 121
F +YE L + + + N ++ N + +V ++NHLKT
Sbjct: 370 LSSLGISFNNFSQIPEVYEKLTMLDRVVMAGNCLEVLNLGVLNRMNHIKHVDLRMNHLKT 429
Query: 122 VLEEKLE 128
++ E LE
Sbjct: 430 MVIENLE 436
>gi|4557535 solute carrier family 26, member 3 [Homo sapiens]
Length = 764
Score = 29.3 bits (64), Expect = 2.1
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 125 EKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYS 160
EKL + +F G++ SS+ + +LH L K+YS
Sbjct: 692 EKLNRYEFFDGEVKSSIFFLTIHDAVLHILMKKDYS 727
>gi|118498356 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 37 QCQKLLWQLNGRLEYC--LKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQD 94
+ +K++ + +G+++ L + + + K +Q ++E AL E + N+ Q
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALK--EEIGNVQLEKAQQ 855
Query: 95 SSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSL 141
S T + + +NLL Q+N +K VLEEK EK+ GK + L
Sbjct: 856 LSITSKVQEL-QNLLKGKEEQMNTMKAVLEEK-EKDLANTGKWLQDL 900
>gi|118498368 kinectin 1 isoform c [Homo sapiens]
Length = 1300
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 37 QCQKLLWQLNGRLEYC--LKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQD 94
+ +K++ + +G+++ L + + + K +Q ++E AL E + N+ Q
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALK--EEIGNVQLEKAQQ 855
Query: 95 SSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSL 141
S T + + +NLL Q+N +K VLEEK EK+ GK + L
Sbjct: 856 LSITSKVQEL-QNLLKGKEEQMNTMKAVLEEK-EKDLANTGKWLQDL 900
>gi|33620775 kinectin 1 isoform a [Homo sapiens]
Length = 1357
Score = 28.9 bits (63), Expect = 2.7
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 6/107 (5%)
Query: 37 QCQKLLWQLNGRLEYC--LKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQD 94
+ +K++ + +G+++ L + + + K +Q ++E AL E + N+ Q
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQDLKQEIKALK--EEIGNVQLEKAQQ 855
Query: 95 SSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTRGKLMSSL 141
S T + + +NLL Q+N +K VLEEK EK+ GK + L
Sbjct: 856 LSITSKVQEL-QNLLKGKEEQMNTMKAVLEEK-EKDLANTGKWLQDL 900
>gi|98986459 jumonji domain containing 2A [Homo sapiens]
Length = 1064
Score = 28.9 bits (63), Expect = 2.7
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 54 KDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQ 85
+ R+ +IP+E+ Q + F KED + YEM +
Sbjct: 398 RHRVCLEIPQEVSQSELFPKEDLSSEQYEMTE 429
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 28.9 bits (63), Expect = 2.7
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 5 CLLQIALLLCFSTTALSMSYNLLGFLQRSSNFQCQKLL-WQLNGRLEYCLKDRMNFDIPE 63
C+ + L L S + F QR + + + +L ++N RL + ++ +
Sbjct: 314 CMTTMIATLSLEKRNLDESISTCRFAQRVALIKNEAVLNEEINPRLVIKRLQKEIQELKD 373
Query: 64 EIKQLQQFQKEDAALTIYEMLQ--NIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKT 121
E+ + Q+ +A LT E+LQ + F +D S E + + V+H +HLK
Sbjct: 374 ELAMVTGEQRTEA-LTEAELLQLEKLITSFLEDQDSDSRLEVGAD--MRKVHHCFHHLKK 430
Query: 122 VLEEKLEKEDFT 133
+L +K E+ T
Sbjct: 431 LLNDKKILENNT 442
>gi|109255239 centrosomal protein 63 isoform b [Homo sapiens]
Length = 541
Score = 28.5 bits (62), Expect = 3.5
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 29 FLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQFQK----EDAALTIYEML 84
F Q+S +++ Q+L++Q ++ R EI Q Q + E L+ +
Sbjct: 149 FRQKSLDWEKQRLIYQQ--QVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEI 206
Query: 85 QNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTR--GKLMSSL 141
Q++ + + + + NE +E L V + TVL+E+ +KE+ R KL+ +L
Sbjct: 207 QHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEAL 265
>gi|22095367 centrosomal protein 63 isoform a [Homo sapiens]
Length = 703
Score = 28.5 bits (62), Expect = 3.5
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 29 FLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQFQK----EDAALTIYEML 84
F Q+S +++ Q+L++Q ++ R EI Q Q + E L+ +
Sbjct: 149 FRQKSLDWEKQRLIYQQ--QVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEI 206
Query: 85 QNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTR--GKLMSSL 141
Q++ + + + + NE +E L V + TVL+E+ +KE+ R KL+ +L
Sbjct: 207 QHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEAL 265
>gi|109255236 centrosomal protein 63 isoform d [Homo sapiens]
Length = 475
Score = 28.5 bits (62), Expect = 3.5
Identities = 29/119 (24%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 29 FLQRSSNFQCQKLLWQLNGRLEYCLKDRMNFDIPEEIKQLQQFQK----EDAALTIYEML 84
F Q+S +++ Q+L++Q ++ R EI Q Q + E L+ +
Sbjct: 149 FRQKSLDWEKQRLIYQQ--QVSSLEAQRKALAEQSEIIQAQLVNRKQKLESVELSSQSEI 206
Query: 85 QNIFAIFRQDSSSTGWNETIVENLLANVYHQINHLKTVLEEKLEKEDFTR--GKLMSSL 141
Q++ + + + + NE +E L V + TVL+E+ +KE+ R KL+ +L
Sbjct: 207 QHLSSKLERANDTICANELEIERLTMRVNDLVGTSMTVLQEQQQKEEKLRESEKLLEAL 265
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,234,729
Number of Sequences: 37866
Number of extensions: 246857
Number of successful extensions: 876
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 44
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.