Search of human proteins with 4504589

Search of human proteins with 4504589

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504589 interferon, alpha 10 [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504589 interferon, alpha 10 [Homo sapiens]                        374   e-104
gi|10835103 interferon, alpha 4 [Homo sapiens]                        358   2e-99
gi|10880985 interferon, alpha 17 [Homo sapiens]                       357   3e-99
gi|71143135 interferon, alpha 7 [Homo sapiens]                        347   5e-96
gi|169791013 interferon, alpha 21 [Homo sapiens]                      340   6e-94
gi|4504593 interferon, alpha 16 [Homo sapiens]                        327   4e-90
gi|170763491 interferon, alpha 14 [Homo sapiens]                      324   3e-89
gi|4504597 interferon, alpha 5 [Homo sapiens]                         320   5e-88
gi|11128015 interferon, alpha 6 [Homo sapiens]                        305   1e-83
gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            301   2e-82
gi|13128950 interferon, alpha 1 [Homo sapiens]                        300   5e-82
gi|11067751 interferon, alpha 2 [Homo sapiens]                        299   1e-81
gi|42476083 interferon, alpha 8 [Homo sapiens]                        299   1e-81
gi|4504605 interferon, omega 1 [Homo sapiens]                         216   7e-57
gi|28882045 interferon, epsilon [Homo sapiens]                        109   2e-24
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]               97   1e-20
gi|112789564 interferon kappa precursor [Homo sapiens]                 81   5e-16
gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens]                 31   0.73 
gi|5032281 dystrophin Dp427c isoform [Homo sapiens]                    28   3.6  
gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]                   28   3.6  
gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]                 28   3.6  
gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]                   28   3.6  
gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]                   28   3.6  
gi|5032285 dystrophin Dp427l isoform [Homo sapiens]                    28   3.6  
gi|5032283 dystrophin Dp427m isoform [Homo sapiens]                    28   3.6  
gi|34577120 mitochondrial translational release factor 1 [Homo s...    28   3.6  
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    28   4.7  
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    28   4.7  
gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]     28   4.7  
gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]     28   6.1  

>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  374 bits (960), Expect = e-104
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
           IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  358 bits (918), Expect = 2e-99
 Identities = 181/189 (95%), Positives = 184/189 (97%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            P+EEFDG+QFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  357 bits (917), Expect = 3e-99
 Identities = 180/189 (95%), Positives = 184/189 (97%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
           +PQEEFDGNQFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLN+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVG+EETPLMNEDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQK LRRKD
Sbjct: 181 LQKILRRKD 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  347 bits (889), Expect = 5e-96
 Identities = 174/189 (92%), Positives = 180/189 (95%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MA SFSLLM VLVLSYKSICSLGCDLPQTHSL NRRALILL QMGRISPFSCLKDRH+FR
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            P+EEFDG+QFQK QAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNED ILAVRKYFQRITLYL+E+KYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLRRKD 189
           L+K LRRKD
Sbjct: 181 LKKGLRRKD 189


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  340 bits (871), Expect = 6e-94
 Identities = 172/189 (91%), Positives = 177/189 (93%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKAQAISVLHEMIQQTFNLFST+DSSA WEQSLLEKFSTEL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMN DSILAV+KYFQRITLYL E+KYSPCAWEVVRAEIMRS S S  
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 181 LQKRLRRKD 189
            Q+RLRRK+
Sbjct: 181 FQERLRRKE 189


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  327 bits (838), Expect = 4e-90
 Identities = 165/189 (87%), Positives = 174/189 (92%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILL QMGRIS FSCLKDR+DF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQE FDGNQFQKAQAIS  HEMIQQTFNLFST+DSSAAW+++LL+KF  EL+QQLNDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV QEVGVEE  LMNEDSILAVRKYFQRITLYL+ +KYSPCAWEVVRAEIMRS SFSTN
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLRRKD 189
           LQK LRRKD
Sbjct: 181 LQKGLRRKD 189


>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  324 bits (830), Expect = 3e-89
 Identities = 159/189 (84%), Positives = 177/189 (93%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL F+L+MA++VLS KS CSLGC+L QTHSL NRR L+L+ QM RISPFSCLKDRHDF 
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKAQAISVLHEM+QQTFNLFST++SSAAW+++LLEKF  EL+QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQEVGVEETPLMNEDSILAV+KYFQRITLYL+E+KYSPCAWEVVRAEIMRSLSFSTN
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLRRKD 189
           LQKRLRRKD
Sbjct: 181 LQKRLRRKD 189


>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  320 bits (820), Expect = 5e-88
 Identities = 156/189 (82%), Positives = 173/189 (91%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL F LLMA++VL+ KSICSLGCDLPQTHSL NRR L+++ QMGRISPFSCLKDRHDF 
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKAQAISVLHEMIQQTFNLFST+DSSA W+++LL+KF TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           AC++QEVGVE+TPLMN DSIL VRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  305 bits (782), Expect = 1e-83
 Identities = 153/189 (80%), Positives = 169/189 (89%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL F+LLMA++VLS KS CSL CDLPQTHSLG+RR ++LL QM RIS FSCLKDRHDFR
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKA+AISVLHE+IQQTFNLFST+DSS AW++ LL+K  TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QEV V  TPLMNEDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  301 bits (772), Expect = 2e-82
 Identities = 150/189 (79%), Positives = 167/189 (88%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MA  F+LLMA++VLS KS CSLGCDLP+THSL NRR L+LL QM RISP SCL DRHDF 
Sbjct: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKA AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QE  V ETPLMN DSILAV+KYF+RITLYL E+KYSPCAWEVVRAEIMRSLS STN
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 182 LQERLRRKE 190


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  300 bits (768), Expect = 5e-82
 Identities = 149/189 (78%), Positives = 166/189 (87%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MA  F+LLM ++VLS KS CSLGCDLP+THSL NRR L+LL QM RISP SCL DRHDF 
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFDGNQFQKA AISVLHE+IQQ FNLF+T+DSSAAW++ LL+KF TELYQQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACV+QE  V ETPLMN DSILAV+KYF+RITLYL E+KYSPCAWEVVRAEIMRSLS STN
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 181 LQKRLRRKD 189
           LQ+RLRRK+
Sbjct: 181 LQERLRRKE 189


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  299 bits (765), Expect = 1e-81
 Identities = 152/189 (80%), Positives = 168/189 (88%), Gaps = 1/189 (0%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL+F+LL+A+LVLS KS CS+GCDLPQTHSLG+RR L+LL QM RIS FSCLKDRHDF 
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEF GNQFQKA+ I VLHEMIQQ FNLFST+DSSAAW+++LL+KF TELYQQLNDLE
Sbjct: 61  FPQEEF-GNQFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           ACVIQ VGV ETPLM EDSILAVRKYFQRITLYL E+KYSPCAWEVVRAEIMRS S STN
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 181 LQKRLRRKD 189
           LQ+ LR K+
Sbjct: 180 LQESLRSKE 188


>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  299 bits (765), Expect = 1e-81
 Identities = 152/189 (80%), Positives = 168/189 (88%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILL QM RISPFSCLKDRHDF 
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQEEFD  QFQKAQAISVLHEMIQQTFNLFST+DSSAA +++LL++F  EL QQLNDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
           +CV+QEVGV E+PLM EDSILAVRKYFQRITLYL E+KYS CAWEVVRAEIMRS S S N
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 181 LQKRLRRKD 189
           LQKRL+ K+
Sbjct: 181 LQKRLKSKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  216 bits (551), Expect = 7e-57
 Identities = 111/189 (58%), Positives = 135/189 (71%)

Query: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60
           MAL F LL A+++ SY  + SLGCDLPQ H L +R  L+LL QM RISPF CLKDR DFR
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120
            PQE   G+Q QKA  +SVLHEM+QQ F+LF TE SSAAW  +LL++  T L+QQL  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180
            C++Q VG  E+        L +R+YFQ I +YL E+KYS CAWEVVR EIM+SL  STN
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 181 LQKRLRRKD 189
           +Q+RLR KD
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  109 bits (272), Expect = 2e-24
 Identities = 59/155 (38%), Positives = 91/155 (58%)

Query: 34  NRRALILLGQMGRISPFSCLKDRHDFRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFST 93
           N+ +L LL ++  +S   CL  R +F +PQ+     Q+QK   +++LHEM+QQ F+LF  
Sbjct: 35  NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94

Query: 94  EDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLY 153
             S   WE++  EKF  +L+QQL  LEA +  E       L +++  L V+ YF+RI  Y
Sbjct: 95  NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154

Query: 154 LIERKYSPCAWEVVRAEIMRSLSFSTNLQKRLRRK 188
           L  + YS CAW +V+ EI R L F  +L ++L ++
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 49/135 (36%), Positives = 77/135 (57%)

Query: 52  CLKDRHDFRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTE 111
           CLKDR +F IP+E     QFQK  A   ++EM+Q  F +F  + SS  W ++++E     
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 112 LYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEI 171
           +Y Q+N L+  + +++  E+       S L +++Y+ RI  YL  ++YS CAW +VR EI
Sbjct: 112 VYHQINHLKTVLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAWTIVRVEI 171

Query: 172 MRSLSFSTNLQKRLR 186
           +R+  F   L   LR
Sbjct: 172 LRNFYFINRLTGYLR 186


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 64/203 (31%), Positives = 90/203 (44%), Gaps = 24/203 (11%)

Query: 3   LSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRA----LILLGQMGRISPFSCLKDRHD 58
           L   +LM + +       SL C+L   H    RR     L  L  M    P  CL++   
Sbjct: 12  LWLEILMGIFIAG---TLSLDCNLLNVHL---RRVTWQNLRHLSSMSNSFPVECLRENIA 65

Query: 59  FRIPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLND 118
           F +PQE     Q  K       +EM  Q FN+FS + +   W++  L++    L QQ   
Sbjct: 66  FELPQEFLQYTQPMKRDIKKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEY 124

Query: 119 LEACVIQEVGV-EETPLMNED------------SILAVRKYFQRITLYLIERKYSPCAWE 165
           L  C+ ++    E+   M E+            S L +R+YF RI  +L E+KYS CAWE
Sbjct: 125 LNQCLEEDKNENEDMKEMKENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWE 184

Query: 166 VVRAEIMRSLSFSTNLQKRLRRK 188
           +VR EI R L +        RRK
Sbjct: 185 IVRVEIRRCLYYFYKFTALFRRK 207


>gi|58219054 pro-apoptotic Bcl-2 protein [Homo sapiens]
          Length = 163

 Score = 30.8 bits (68), Expect = 0.73
 Identities = 18/76 (23%), Positives = 41/76 (53%), Gaps = 3/76 (3%)

Query: 73  KAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEET 132
           K Q  ++L + ++     +  +DSS A+E++ L   S +L + +  +   V+ +V +  T
Sbjct: 81  KGQTGAILQDTVESLSKTWCAQDSSLAYERAFL-AVSVKLLEYMAHIAPEVVGQVAIPMT 139

Query: 133 PLMNEDSILAVRKYFQ 148
            ++N +   A+R++ Q
Sbjct: 140 GMINGNQ--AIREFIQ 153


>gi|5032281 dystrophin Dp427c isoform [Homo sapiens]
          Length = 3677

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105  LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
            LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 1775 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1822


>gi|5032291 dystrophin Dp260-2 isoform [Homo sapiens]
          Length = 2341

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105 LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
           LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 439 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 486


>gi|150036268 dystrophin Dp260-1 isoform [Homo sapiens]
          Length = 2344

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105 LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
           LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 442 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 489


>gi|5032315 dystrophin Dp427p2 isoform [Homo sapiens]
          Length = 3562

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105  LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
            LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707


>gi|5032287 dystrophin Dp427p1 isoform [Homo sapiens]
          Length = 3681

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105  LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
            LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 1779 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1826


>gi|5032285 dystrophin Dp427l isoform [Homo sapiens]
          Length = 3562

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105  LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
            LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 1660 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1707


>gi|5032283 dystrophin Dp427m isoform [Homo sapiens]
          Length = 3685

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 105  LEKFSTELYQQLNDLEACVIQEVGVEETPL---MNEDSILAVRKYFQR 149
            LE+F++++ + L  LEA + Q V ++E      MNED+   V++  QR
Sbjct: 1783 LEQFNSDIQKLLEPLEAEIQQGVNLKEEDFNKDMNEDNEGTVKELLQR 1830


>gi|34577120 mitochondrial translational release factor 1 [Homo
           sapiens]
          Length = 445

 Score = 28.5 bits (62), Expect = 3.6
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 79  VLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEACVIQEVGVEE 131
           +LH + +     +  +D+   W+   L+K+   L ++   LE C +Q + V E
Sbjct: 49  ILHLLSKNWSRRYCHQDTKMLWKHKALQKYMENLSKEYQTLEQC-LQHIPVNE 100


>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
            isoform 2 [Homo sapiens]
          Length = 2472

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 63   QEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEAC 122
            QEE D  + + AQ  +  H+ IQ+T   +  + S    E   LE       ++  ++ A 
Sbjct: 2200 QEENDKLRQEFAQHANAFHQWIQET-RTYLLDGSCMVEESGTLESQLEATKRKHQEIRAM 2258

Query: 123  VIQEVGVEETPLMNEDSILAVRKYFQRITLYLIER 157
              Q   +E+     E++++   KY +  T+ L ++
Sbjct: 2259 RSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQ 2293


>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
            isoform 1 [Homo sapiens]
          Length = 2477

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 63   QEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLEAC 122
            QEE D  + + AQ  +  H+ IQ+T   +  + S    E   LE       ++  ++ A 
Sbjct: 2205 QEENDKLRQEFAQHANAFHQWIQET-RTYLLDGSCMVEESGTLESQLEATKRKHQEIRAM 2263

Query: 123  VIQEVGVEETPLMNEDSILAVRKYFQRITLYLIER 157
              Q   +E+     E++++   KY +  T+ L ++
Sbjct: 2264 RSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQ 2298


>gi|38455385 lysosomal-associated membrane protein 3 [Homo sapiens]
          Length = 416

 Score = 28.1 bits (61), Expect = 4.7
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 110 TELYQQLNDLEACVIQEVGVEETPLMNEDSILAVRKYF 147
           T +YQ LN    C+  E+G+ +  + +++S+ + R+YF
Sbjct: 225 TGIYQVLNGSRLCIKAEMGI-QLIVQDKESVFSPRRYF 261


>gi|239741279 PREDICTED: similar to FLJ00310 protein [Homo sapiens]
          Length = 561

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 76  AISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTEL 112
           A+S+LHE+   +      ED S A +Q + EK S  L
Sbjct: 62  AVSILHELCVDSLPTLDDEDLSVATKQCVPEKVSEPL 98


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.134    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,358,616
Number of Sequences: 37866
Number of extensions: 249788
Number of successful extensions: 560
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 538
Number of HSP's gapped (non-prelim): 35
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.