Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4504345
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4504345 alpha 2 globin [Homo sapiens]
(142 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4504347 alpha 1 globin [Homo sapiens] 286 3e-78
gi|4504345 alpha 2 globin [Homo sapiens] 286 3e-78
gi|4885395 theta 1 globin [Homo sapiens] 179 7e-46
gi|4885397 hemoglobin, zeta [Homo sapiens] 172 8e-44
gi|51510893 hemoglobin mu chain [Homo sapiens] 130 3e-31
gi|4504349 beta globin [Homo sapiens] 114 3e-26
gi|4504351 delta globin [Homo sapiens] 113 6e-26
gi|6715607 G-gamma globin [Homo sapiens] 110 3e-25
gi|28302131 A-gamma globin [Homo sapiens] 110 5e-25
gi|4885393 epsilon globin [Homo sapiens] 100 5e-22
gi|19549331 cytoglobin [Homo sapiens] 70 4e-13
gi|44955888 myoglobin [Homo sapiens] 52 2e-07
gi|44955885 myoglobin [Homo sapiens] 52 2e-07
gi|4885477 myoglobin [Homo sapiens] 52 2e-07
gi|239755412 PREDICTED: hypothetical protein [Homo sapiens] 32 0.14
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens] 31 0.39
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens] 31 0.39
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens] 31 0.39
gi|41281447 intraflagellar transport 140 [Homo sapiens] 29 1.1
gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens] 27 5.7
gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens] 27 5.7
gi|154240744 neurobeachin-like 1 isoform 2 [Homo sapiens] 27 5.7
gi|149944613 neurobeachin-like 1 isoform 1 [Homo sapiens] 27 5.7
gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Ho... 27 7.4
gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Ho... 27 7.4
gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Ho... 27 7.4
gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Hom... 27 7.4
gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [... 27 7.4
gi|122937211 KIAA0368 protein [Homo sapiens] 27 7.4
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma... 26 9.7
>gi|4504347 alpha 1 globin [Homo sapiens]
Length = 142
Score = 286 bits (733), Expect = 3e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 121 AVHASLDKFLASVSTVLTSKYR 142
AVHASLDKFLASVSTVLTSKYR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142
>gi|4504345 alpha 2 globin [Homo sapiens]
Length = 142
Score = 286 bits (733), Expect = 3e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG
Sbjct: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP
Sbjct: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
Query: 121 AVHASLDKFLASVSTVLTSKYR 142
AVHASLDKFLASVSTVLTSKYR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142
>gi|4885395 theta 1 globin [Homo sapiens]
Length = 142
Score = 179 bits (454), Expect = 7e-46
Identities = 88/142 (61%), Positives = 110/142 (77%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
M LS D+ V+A W K+G++ G Y EALER FL+FP TKTYF H DLS GS+QV+ HG
Sbjct: 1 MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
+KVADAL+ AV +DD+P+ALSALS LHA +LRVDP +F+LL HCLLVTLA H P +F+P
Sbjct: 61 QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120
Query: 121 AVHASLDKFLASVSTVLTSKYR 142
A+ ASLDKFL+ V + L S+YR
Sbjct: 121 ALQASLDKFLSHVISALVSEYR 142
>gi|4885397 hemoglobin, zeta [Homo sapiens]
Length = 142
Score = 172 bits (436), Expect = 8e-44
Identities = 85/142 (59%), Positives = 104/142 (73%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60
M L+ ++T + + W K+ A G E LER+FLS P TKTYFPHFDL GSAQ++ HG
Sbjct: 1 MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KV A+ +AV +DD+ ALS LS+LHA+ LRVDPVNFKLLSHCLLVTLAA PA+FT
Sbjct: 61 SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
Query: 121 AVHASLDKFLASVSTVLTSKYR 142
HA+ DKFL+ VS+VLT KYR
Sbjct: 121 EAHAAWDKFLSVVSSVLTEKYR 142
>gi|51510893 hemoglobin mu chain [Homo sapiens]
Length = 141
Score = 130 bits (328), Expect = 3e-31
Identities = 64/141 (45%), Positives = 87/141 (61%)
Query: 2 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGK 61
+LS ++ + W + H ++GAE L R+F +P+TK YFPH + Q+ HG+
Sbjct: 1 MLSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHGQ 60
Query: 62 KVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPA 121
++ A+ AV HVD++ ALS L+DLHA LRVDP NF LL C V LA+HL EFT
Sbjct: 61 RMLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTVQ 120
Query: 122 VHASLDKFLASVSTVLTSKYR 142
+ A+ DKFL V+ VLT KYR
Sbjct: 121 MQAAWDKFLTGVAVVLTEKYR 141
>gi|4504349 beta globin [Homo sapiens]
Length = 147
Score = 114 bits (285), Expect = 3e-26
Identities = 61/145 (42%), Positives = 86/145 (59%), Gaps = 8/145 (5%)
Query: 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSAQV 56
L+P +K+ V A WGKV + E G EAL R+ + +P T+ +F F D G+ +V
Sbjct: 4 LTPEEKSAVTALWGKV--NVDEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKV 61
Query: 57 KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116
K HGKKV A ++ +AH+D++ + LS+LH KL VDP NF+LL + L+ LA H
Sbjct: 62 KAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGK 121
Query: 117 EFTPAVHASLDKFLASVSTVLTSKY 141
EFTP V A+ K +A V+ L KY
Sbjct: 122 EFTPPVQAAYQKVVAGVANALAHKY 146
>gi|4504351 delta globin [Homo sapiens]
Length = 147
Score = 113 bits (282), Expect = 6e-26
Identities = 63/145 (43%), Positives = 87/145 (60%), Gaps = 8/145 (5%)
Query: 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSH-----GSAQV 56
L+P +KT V A WGKV A G EAL R+ + +P T+ +F F DLS G+ +V
Sbjct: 4 LTPEEKTAVNALWGKVNVDA--VGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPKV 61
Query: 57 KGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPA 116
K HGKKV A ++ +AH+D++ S LS+LH KL VDP NF+LL + L+ LA +
Sbjct: 62 KAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGK 121
Query: 117 EFTPAVHASLDKFLASVSTVLTSKY 141
EFTP + A+ K +A V+ L KY
Sbjct: 122 EFTPQMQAAYQKVVAGVANALAHKY 146
>gi|6715607 G-gamma globin [Homo sapiens]
Length = 147
Score = 110 bits (276), Expect = 3e-25
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60
DK + + WGKV + G E L R+ + +P T+ +F F +LS SA +VK HG
Sbjct: 8 DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KKV +L +A+ H+DD+ + LS+LH KL VDP NFKLL + L+ LA H EFTP
Sbjct: 66 KKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
Query: 121 AVHASLDKFLASVSTVLTSKY 141
V AS K + V++ L+S+Y
Sbjct: 126 EVQASWQKMVTGVASALSSRY 146
>gi|28302131 A-gamma globin [Homo sapiens]
Length = 147
Score = 110 bits (274), Expect = 5e-25
Identities = 60/141 (42%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60
DK + + WGKV + G E L R+ + +P T+ +F F +LS SA +VK HG
Sbjct: 8 DKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVKAHG 65
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KKV +L +A H+DD+ + LS+LH KL VDP NFKLL + L+ LA H EFTP
Sbjct: 66 KKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKEFTP 125
Query: 121 AVHASLDKFLASVSTVLTSKY 141
V AS K + +V++ L+S+Y
Sbjct: 126 EVQASWQKMVTAVASALSSRY 146
>gi|4885393 epsilon globin [Homo sapiens]
Length = 147
Score = 100 bits (248), Expect = 5e-22
Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 8/141 (5%)
Query: 7 DKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF-DLSHGSA-----QVKGHG 60
+K V + W K+ E G EAL R+ + +P T+ +F F +LS SA +VK HG
Sbjct: 8 EKAAVTSLWSKMNVE--EAGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVKAHG 65
Query: 61 KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120
KKV + +A+ ++D++ A + LS+LH KL VDP NFKLL + +++ LA H EFTP
Sbjct: 66 KKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKEFTP 125
Query: 121 AVHASLDKFLASVSTVLTSKY 141
V A+ K +++V+ L KY
Sbjct: 126 EVQAAWQKLVSAVAIALAHKY 146
>gi|19549331 cytoglobin [Homo sapiens]
Length = 190
Score = 70.5 bits (171), Expect = 4e-13
Identities = 43/149 (28%), Positives = 75/149 (50%), Gaps = 9/149 (6%)
Query: 3 LSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHG------SAQV 56
LS A++ V+A W ++ A+ + G L R F++FP+ K YF F S Q+
Sbjct: 19 LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQL 78
Query: 57 KGHGKKVADALTNAVAHV---DDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH 113
+ H +V AL V ++ D + + L+ + HA K +V+PV FK+LS +L +A
Sbjct: 79 RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEE 138
Query: 114 LPAEFTPAVHASLDKFLASVSTVLTSKYR 142
++F P + K + + +T+ Y+
Sbjct: 139 FASDFPPETQRAWAKLRGLIYSHVTAAYK 167
>gi|44955888 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54
M LS + V WGKV A +G E L R+F P T F F D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114
+K HG V AL + + L+ HA K ++ + +S C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142
P +F +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|44955885 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54
M LS + V WGKV A +G E L R+F P T F F D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114
+K HG V AL + + L+ HA K ++ + +S C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142
P +F +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|4885477 myoglobin [Homo sapiens]
Length = 154
Score = 52.0 bits (123), Expect = 2e-07
Identities = 39/148 (26%), Positives = 59/148 (39%), Gaps = 6/148 (4%)
Query: 1 MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHF------DLSHGSA 54
M LS + V WGKV A +G E L R+F P T F F D S
Sbjct: 1 MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60
Query: 55 QVKGHGKKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHL 114
+K HG V AL + + L+ HA K ++ + +S C++ L +
Sbjct: 61 DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120
Query: 115 PAEFTPAVHASLDKFLASVSTVLTSKYR 142
P +F +++K L + S Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148
>gi|239755412 PREDICTED: hypothetical protein [Homo sapiens]
Length = 305
Score = 32.3 bits (72), Expect = 0.14
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Query: 2 VLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGK 61
VLS + A G+VG AGE G++ + R + + P DL G Q + H K
Sbjct: 100 VLSKGSDRRLPRALGEVGVEAGEQGSDGIPR------SARIVEPDADLRDGPVQAEEHPK 153
Query: 62 KV 63
++
Sbjct: 154 RL 155
>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.39
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 22 AGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 81
AG +GA+ L+ L + P D + A+V HG V D + + V +AL
Sbjct: 191 AGGHGAQRLQVALLH---VQGVLPQADAALEIARVGVHGTPVTDVIGSV--RVRGTEDAL 245
Query: 82 SALSDLHAHKLRVDPVNFKLL 102
LHAH +RV +LL
Sbjct: 246 PDQQGLHAHLIRVGDQRLQLL 266
>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.39
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 22 AGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 81
AG +GA+ L+ L + P D + A+V HG V D + + V +AL
Sbjct: 191 AGGHGAQRLQVALLH---VQGVLPQADAALEIARVGVHGTPVTDVIGSV--RVRGTEDAL 245
Query: 82 SALSDLHAHKLRVDPVNFKLL 102
LHAH +RV +LL
Sbjct: 246 PDQQGLHAHLIRVGDQRLQLL 266
>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 0.39
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%)
Query: 22 AGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVAHVDDMPNAL 81
AG +GA+ L+ L + P D + A+V HG V D + + V +AL
Sbjct: 191 AGGHGAQRLQVALLH---VQGVLPQADAALEIARVGVHGTPVTDVIGSV--RVRGTEDAL 245
Query: 82 SALSDLHAHKLRVDPVNFKLL 102
LHAH +RV +LL
Sbjct: 246 PDQQGLHAHLIRVGDQRLQLL 266
>gi|41281447 intraflagellar transport 140 [Homo sapiens]
Length = 1462
Score = 29.3 bits (64), Expect = 1.1
Identities = 27/101 (26%), Positives = 41/101 (40%), Gaps = 11/101 (10%)
Query: 13 AAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKKVADALTNAVA 72
A W KV G GAE +R L PT +L Q++ +K A+ + ++
Sbjct: 349 AMWRKVPDFLGSPGAEGKDRWALQTPT--------ELQGNITQIQWGSRKNLLAVNSVIS 400
Query: 73 HVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAH 113
A+S+ ++V P LL+ C L T AH
Sbjct: 401 VAILSERAMSSHFHQQVAAMQVSP---SLLNVCFLSTGVAH 438
>gi|8392830 alpha 1,4-galactosyltransferase [Homo sapiens]
Length = 353
Score = 26.9 bits (58), Expect = 5.7
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
Query: 75 DDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTPAVHASLDKFL 130
+++P LSA +H + F+ S LL A L A + P H ++ +L
Sbjct: 302 EELPRLLSATYAVHVWNKKSQGTRFEATSRALL----AQLHARYCPTTHEAMKMYL 353
>gi|224451124 neurobeachin-like 1 isoform 3 [Homo sapiens]
Length = 2694
Score = 26.9 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 83 ALSDLHAHKLRVDPVNFKLLSHCLLVT 109
++ DLH+ L ++P+ +L HC+ VT
Sbjct: 2610 SIRDLHSLNLSINPLAMRLPIHCVCVT 2636
>gi|154240744 neurobeachin-like 1 isoform 2 [Homo sapiens]
Length = 1335
Score = 26.9 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 83 ALSDLHAHKLRVDPVNFKLLSHCLLVT 109
++ DLH+ L ++P+ +L HC+ VT
Sbjct: 1251 SIRDLHSLNLSINPLAMRLPIHCVCVT 1277
>gi|149944613 neurobeachin-like 1 isoform 1 [Homo sapiens]
Length = 1404
Score = 26.9 bits (58), Expect = 5.7
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 83 ALSDLHAHKLRVDPVNFKLLSHCLLVT 109
++ DLH+ L ++P+ +L HC+ VT
Sbjct: 1320 SIRDLHSLNLSINPLAMRLPIHCVCVT 1346
>gi|28558998 polypyrimidine tract-binding protein 1 isoform d [Homo
sapiens]
Length = 197
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 69 NAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSH 104
NA+ + D A A+S L+ HKL P+ L H
Sbjct: 42 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 77
>gi|14165466 polypyrimidine tract-binding protein 1 isoform c [Homo
sapiens]
Length = 531
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 69 NAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSH 104
NA+ + D A A+S L+ HKL P+ L H
Sbjct: 376 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 411
>gi|14165464 polypyrimidine tract-binding protein 1 isoform b [Homo
sapiens]
Length = 550
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 69 NAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSH 104
NA+ + D A A+S L+ HKL P+ L H
Sbjct: 395 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 430
>gi|4506243 polypyrimidine tract-binding protein 1 isoform a [Homo
sapiens]
Length = 557
Score = 26.6 bits (57), Expect = 7.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 69 NAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSH 104
NA+ + D A A+S L+ HKL P+ L H
Sbjct: 402 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 437
>gi|24308073 protein tyrosine phosphatase, non-receptor type 23 [Homo
sapiens]
Length = 1636
Score = 26.6 bits (57), Expect = 7.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 75 DDMPNALSALSDLHAHKLRVDPVNFKLLSHC 105
D N L + ++HAH L P++ ++ HC
Sbjct: 1362 DSPSNLLRFIQEVHAHYLHQRPLHTPIIVHC 1392
>gi|122937211 KIAA0368 protein [Homo sapiens]
Length = 2017
Score = 26.6 bits (57), Expect = 7.4
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 19 GAHAGEYGAEALERMFLSFPTTKT----------YFPHFDLSHGSAQVKGHGKKVADALT 68
GAHAG + LER+FL +T + P L S Q +G KKV + L
Sbjct: 177 GAHAGRAATDQLERVFLRLGHAETDEQLQNIISKFLPPVLLKLSSTQ-EGVRKKVMELLV 235
Query: 69 NAVAHVDDMP 78
+ + P
Sbjct: 236 HLNKRIKSRP 245
>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
containing 9 [Homo sapiens]
Length = 4614
Score = 26.2 bits (56), Expect = 9.7
Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 19/61 (31%)
Query: 6 ADKTNVKAAW---GKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHGKK 62
AD ++ +A W G +G H GA + +PH G Q GHGK
Sbjct: 933 ADPSHTQAGWRKEGNLGTHKAAKGASC-----------NSLYPH-----GPRQTAGHGKA 976
Query: 63 V 63
V
Sbjct: 977 V 977
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.130 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,925,123
Number of Sequences: 37866
Number of extensions: 182552
Number of successful extensions: 483
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 448
Number of HSP's gapped (non-prelim): 39
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.