Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: A4GALT Sequence: fasta or formatted (353aa) NCBI GI: 8392830
Description:

alpha 1,4-galactosyltransferase

Referenced in:

Sphingomyelin, Ceramides, and Glycolipids
Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         23           2
 C cysteine            2.3          8           1
 D aspartate           3.4         12           1
 E glutamate           4.8         17           2
 F phenylalanine       5.9         21           2
 G glycine             5.7         20           2
 H histidine           3.1         11           1
 I isoleucine          4.0         14           2
 K lysine              4.0         14           2
 L leucine            13.0         46           3
 M methionine          2.8         10           1
 N asparagine          3.7         13           1
 P proline             8.5         30           2
 Q glutamine           2.8         10           1
 R arginine            6.8         24           2
 S serine              5.4         19           1
 T threonine           5.9         21           2
 V valine              5.1         18           2
 W tryptophan          2.8         10           1
 Y tyrosine            3.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   alpha 1,4-galactosyltransferase 
A4GNT                 0.253   alpha-1,4-N-acetylglucosaminyltransferase 
MEX3B                 0.011   mex-3 homolog B 
SETD1B                0.008   SET domain containing 1B 
BAG3                  0.008   BCL2-associated athanogene 3 
MLLT6                 0.008   myeloid/lymphoid or mixed-lineage leukemia (trithora...
TRAK2                 0.007   trafficking protein, kinesin binding 2 
RNF17                 0.007   ring finger protein 17 
CNTN6                 0.007   contactin 6 
RAPH1                 0.007   Ras association and pleckstrin homology domains 1 is...
C19orf54              0.006   hypothetical protein LOC284325 
C17orf87              0.006   hypothetical protein LOC388325 
COL24A1               0.006   collagen, type XXIV, alpha 1 
IL23R                 0.004   interleukin 23 receptor precursor 
LAMP1                 0.004   lysosomal-associated membrane protein 1 
ARAP1                 0.004   ArfGAP with RhoGAP domain, ankyrin repeat and PH dom...
RFX7                  0.004   regulatory factor X domain containing 2 
COL9A3                0.004   alpha 3 type IX collagen 
SPRR2G                0.004   small proline-rich protein 2G 
FAM134A               0.004   hypothetical protein LOC79137 
KIAA1305              0.004   hypothetical protein LOC57523 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press