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Search of human proteins with 4503061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503061 crystallin, beta B1 [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503061 crystallin, beta B1 [Homo sapiens] 526 e-150
gi|4758074 crystallin, beta B3 [Homo sapiens] 253 1e-67
gi|4503063 crystallin, beta B2 [Homo sapiens] 239 2e-63
gi|12056461 crystallin, beta A3 [Homo sapiens] 196 2e-50
gi|16936542 crystallin, beta A2 [Homo sapiens] 166 1e-41
gi|16936540 crystallin, beta A2 [Homo sapiens] 166 1e-41
gi|7019357 crystallin, beta A2 [Homo sapiens] 166 1e-41
gi|4503059 crystallin, beta A4 [Homo sapiens] 165 3e-41
gi|8922120 crystallin, gamma S [Homo sapiens] 119 3e-27
gi|89886227 absent in melanoma 1-like [Homo sapiens] 112 3e-25
gi|10518338 crystallin, gamma C [Homo sapiens] 112 4e-25
gi|148491057 crystallin, gamma A [Homo sapiens] 108 3e-24
gi|148491074 crystallin, gamma B [Homo sapiens] 107 1e-23
gi|90403579 beta-gamma crystallin domain containing 3 [Homo sapi... 106 2e-23
gi|13377002 crystallin, gamma D [Homo sapiens] 103 1e-22
gi|21389517 gammaN-crystallin [Homo sapiens] 99 4e-21
gi|62988361 absent in melanoma 1 [Homo sapiens] 98 6e-21
gi|45387951 transmembrane protein 108 [Homo sapiens] 34 0.11
gi|210147493 transmembrane protein 108 [Homo sapiens] 34 0.11
gi|116284392 mucin 2 precursor [Homo sapiens] 32 0.40
gi|146134388 YLP motif containing 1 [Homo sapiens] 32 0.40
gi|194272180 plexin B1 [Homo sapiens] 32 0.53
gi|40254442 plexin B1 [Homo sapiens] 32 0.53
gi|7662162 ALEX2 protein [Homo sapiens] 32 0.53
gi|29540562 ALEX2 protein [Homo sapiens] 32 0.53
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 32 0.69
gi|45120115 hypothetical protein LOC56905 [Homo sapiens] 31 0.90
gi|163965366 nascent polypeptide-associated complex alpha subuni... 31 0.90
gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens] 31 1.2
gi|153792074 proline rich 12 [Homo sapiens] 31 1.2
>gi|4503061 crystallin, beta B1 [Homo sapiens]
Length = 252
Score = 526 bits (1354), Expect = e-150
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPPGNYR 60
MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPPGNYR
Sbjct: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPPGNYR 60
Query: 61 LVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGE 120
LVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGE
Sbjct: 61 LVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGE 120
Query: 121 YPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFS 180
YPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFS
Sbjct: 121 YPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFS 180
Query: 181 DRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQWHLE 240
DRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQWHLE
Sbjct: 181 DRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQWHLE 240
Query: 241 GSFPVLATEPPK 252
GSFPVLATEPPK
Sbjct: 241 GSFPVLATEPPK 252
>gi|4758074 crystallin, beta B3 [Homo sapiens]
Length = 211
Score = 253 bits (645), Expect = 1e-67
Identities = 107/188 (56%), Positives = 142/188 (75%)
Query: 57 GNYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFIL 116
G+Y+++++ELENFQG+R E S EC +L D ++V SI V +GPW+AFE FRGE F+L
Sbjct: 22 GSYKVILYELENFQGKRCELSAECPSLTDSLLEKVGSIQVESGPWLAFESRAFRGEQFVL 81
Query: 117 EKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWV 176
EKG+YPRW+ WS+S SD L+S RP+ +D+ HK+ LFE F G +EI DD PSLW
Sbjct: 82 EKGDYPRWDAWSNSRDSDSLLSLRPLNIDSPHHKLHLFENPAFSGRKMEIVDDDVPSLWA 141
Query: 177 YGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQ 236
+GF DRV SV+ +GTWVGY++PGYRG QY+ E G++RHWNEW A QPQ+QS+RR+RD++
Sbjct: 142 HGFQDRVASVRAINGTWVGYEFPGYRGRQYVFERGEYRHWNEWDASQPQLQSVRRIRDQK 201
Query: 237 WHLEGSFP 244
WH G FP
Sbjct: 202 WHKRGRFP 209
>gi|4503063 crystallin, beta B2 [Homo sapiens]
Length = 205
Score = 239 bits (610), Expect = 2e-63
Identities = 104/186 (55%), Positives = 140/186 (75%)
Query: 58 NYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILE 117
N ++++FE ENFQG E +G C NL + G ++ S++V AGPWV +EQ+N +GE F+ E
Sbjct: 16 NPKIIIFEQENFQGHSHELNGPCPNLKETGVEKAGSVLVQAGPWVGYEQANCKGEQFVFE 75
Query: 118 KGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVY 177
KGEYPRW++W+SS R+D L S RPIK+D+QEHKI L+E NF G +EI DD PS +
Sbjct: 76 KGEYPRWDSWTSSRRTDSLSSLRPIKVDSQEHKIILYENPNFTGKKMEIIDDDVPSFHAH 135
Query: 178 GFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRDKQW 237
G+ ++V SV+V SGTWVGYQYPGYRG QYLLE GD++ +++GA PQ+QS+RR+RD QW
Sbjct: 136 GYQEKVSSVRVQSGTWVGYQYPGYRGLQYLLEKGDYKDSSDFGAPHPQVQSVRRIRDMQW 195
Query: 238 HLEGSF 243
H G+F
Sbjct: 196 HQRGAF 201
>gi|12056461 crystallin, beta A3 [Homo sapiens]
Length = 215
Score = 196 bits (498), Expect = 2e-50
Identities = 99/204 (48%), Positives = 138/204 (67%), Gaps = 14/204 (6%)
Query: 43 TVPITSAKAAELPPGN---YRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAG 99
T+P T PG+ +++ +++ ENFQG+R EF+ C N+++R FD VRS+ V +G
Sbjct: 12 TLPTTKMAQTNPTPGSLGPWKITIYDQENFQGKRMEFTSSCPNVSERSFDNVRSLKVESG 71
Query: 100 PWVAFEQSNFRGEMFILEKGEYPRWNTWSSS--YRSDRLMSFRPI-KMDAQEHKISLFEG 156
W+ +E ++F G+ FILE+GEYPRW+ WS S Y +RLMSFRPI + +E K+++FE
Sbjct: 72 AWIGYEHTSFCGQQFILERGEYPRWDAWSGSNAYHIERLMSFRPICSANHKESKMTIFEK 131
Query: 157 ANFKGNTIEIQGDDAPSLWVYG-FSDRVGSVKVSSGTWVGYQYPGYRGYQYLLE----PG 211
NF G EI DD PSL G F++ VGS+K+ SG WV YQYPGYRGYQY+LE G
Sbjct: 132 ENFIGRQWEI-SDDYPSLQAMGWFNNEVGSMKIQSGAWVCYQYPGYRGYQYILECDHHGG 190
Query: 212 DFRHWNEWG--AFQPQMQSLRRLR 233
D++HW EWG A Q+QS+RR++
Sbjct: 191 DYKHWREWGSHAQTSQIQSIRRIQ 214
>gi|16936542 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 166 bits (421), Expect = 1e-41
Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 12/189 (6%)
Query: 56 PGNYRLVVFELENFQGRRAEFSGECSNLADRG-FDRVRSIIVSAGPWVAFEQSNFRGEMF 114
P L +++ E+FQGRR +C+N+ +RG RVRS+ V G WVAFE +F+G+ F
Sbjct: 9 PAPASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDFQGQQF 68
Query: 115 ILEKGEYPRWNTW--SSSYRSDRLMSFRPIK-MDAQEHKISLFEGANFKGNTIEIQGDDA 171
ILEKG+YPRW+ W SSS+ S++L+SFRP+ + + +++LFEG NF+G ++ DD
Sbjct: 69 ILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDLV-DDY 127
Query: 172 PSLWVYGFSDR-VGSVKVSSGTWVGYQYPGYRGYQYLLE----PGDFRHWNEWG--AFQP 224
PSL G++ + VGS+KVSSG WV YQYPGYRGYQY+LE G+F + E G A
Sbjct: 128 PSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQAHTG 187
Query: 225 QMQSLRRLR 233
Q+QS+RR++
Sbjct: 188 QLQSIRRVQ 196
>gi|16936540 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 166 bits (421), Expect = 1e-41
Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 12/189 (6%)
Query: 56 PGNYRLVVFELENFQGRRAEFSGECSNLADRG-FDRVRSIIVSAGPWVAFEQSNFRGEMF 114
P L +++ E+FQGRR +C+N+ +RG RVRS+ V G WVAFE +F+G+ F
Sbjct: 9 PAPASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDFQGQQF 68
Query: 115 ILEKGEYPRWNTW--SSSYRSDRLMSFRPIK-MDAQEHKISLFEGANFKGNTIEIQGDDA 171
ILEKG+YPRW+ W SSS+ S++L+SFRP+ + + +++LFEG NF+G ++ DD
Sbjct: 69 ILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDLV-DDY 127
Query: 172 PSLWVYGFSDR-VGSVKVSSGTWVGYQYPGYRGYQYLLE----PGDFRHWNEWG--AFQP 224
PSL G++ + VGS+KVSSG WV YQYPGYRGYQY+LE G+F + E G A
Sbjct: 128 PSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQAHTG 187
Query: 225 QMQSLRRLR 233
Q+QS+RR++
Sbjct: 188 QLQSIRRVQ 196
>gi|7019357 crystallin, beta A2 [Homo sapiens]
Length = 197
Score = 166 bits (421), Expect = 1e-41
Identities = 91/189 (48%), Positives = 129/189 (68%), Gaps = 12/189 (6%)
Query: 56 PGNYRLVVFELENFQGRRAEFSGECSNLADRG-FDRVRSIIVSAGPWVAFEQSNFRGEMF 114
P L +++ E+FQGRR +C+N+ +RG RVRS+ V G WVAFE +F+G+ F
Sbjct: 9 PAPASLTLWDEEDFQGRRCRLLSDCANVCERGGLPRVRSVKVENGVWVAFEYPDFQGQQF 68
Query: 115 ILEKGEYPRWNTW--SSSYRSDRLMSFRPIK-MDAQEHKISLFEGANFKGNTIEIQGDDA 171
ILEKG+YPRW+ W SSS+ S++L+SFRP+ + + +++LFEG NF+G ++ DD
Sbjct: 69 ILEKGDYPRWSAWSGSSSHNSNQLLSFRPVLCANHNDSRVTLFEGDNFQGCKFDLV-DDY 127
Query: 172 PSLWVYGFSDR-VGSVKVSSGTWVGYQYPGYRGYQYLLE----PGDFRHWNEWG--AFQP 224
PSL G++ + VGS+KVSSG WV YQYPGYRGYQY+LE G+F + E G A
Sbjct: 128 PSLPSMGWASKDVGSLKVSSGAWVAYQYPGYRGYQYVLERDRHSGEFCTYGELGTQAHTG 187
Query: 225 QMQSLRRLR 233
Q+QS+RR++
Sbjct: 188 QLQSIRRVQ 196
>gi|4503059 crystallin, beta A4 [Homo sapiens]
Length = 196
Score = 165 bits (418), Expect = 3e-41
Identities = 83/187 (44%), Positives = 128/187 (68%), Gaps = 11/187 (5%)
Query: 57 GNYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFIL 116
G +++VV++ + FQGRR EF+ EC ++ + GF+ VRS+ V +G WV FE + F+G+ +IL
Sbjct: 10 GPWKMVVWDEDGFQGRRHEFTAECPSVLELGFETVRSLKVLSGAWVGFEHAGFQGQQYIL 69
Query: 117 EKGEYPRWNTW--SSSYRSDRLMSFRPIK-MDAQEHKISLFEGANFKGNTIEIQGDDAPS 173
E+GEYP W+ W +++Y ++RL SFRP + ++ ++++FE NF G E+ DD PS
Sbjct: 70 ERGEYPSWDAWGGNTAYPAERLTSFRPAACANHRDSRLTIFEQENFLGKKGEL-SDDYPS 128
Query: 174 LWVYGF-SDRVGSVKVSSGTWVGYQYPGYRGYQYLLE----PGDFRHWNEWGAFQP--QM 226
L G+ + VGS V SG WV Q+PGYRG+QY+LE GD++H+ EWG+ P Q+
Sbjct: 129 LQAMGWEGNEVGSFHVHSGAWVCSQFPGYRGFQYVLECDHHSGDYKHFREWGSHAPTFQV 188
Query: 227 QSLRRLR 233
QS+RR++
Sbjct: 189 QSIRRIQ 195
>gi|8922120 crystallin, gamma S [Homo sapiens]
Length = 178
Score = 119 bits (297), Expect = 3e-27
Identities = 64/174 (36%), Positives = 96/174 (55%), Gaps = 5/174 (2%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ +E +NFQGRR + +C++ R SI V G W +E+ NF G M+IL +G
Sbjct: 7 KITFYEDKNFQGRRYDCDCDCADFHTY-LSRCNSIKVEGGTWAVYERPNFAGYMYILPQG 65
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIKMDAQ-EHKISLFEGANFKGNTIEIQGDDAPSLWVYG 178
EYP + W +DRL S R + + + ++KI +FE +F G E +D PS+
Sbjct: 66 EYPEYQRWMGL--NDRLSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETT-EDCPSIMEQF 122
Query: 179 FSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRL 232
+ S KV G W+ Y+ P YRG QYLL+ ++R +WGA P +QS RR+
Sbjct: 123 HMREIHSCKVLEGVWIFYELPNYRGRQYLLDKKEYRKPIDWGAASPAVQSFRRI 176
Score = 55.8 bits (133), Expect = 3e-08
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 46 ITSAKAAELPPGN-YRLVVFELENFQGRRAEFSGECSNLADRGFDR-VRSIIVSAGPWVA 103
++S +A LP G Y++ +FE +F G+ E + +C ++ ++ R + S V G W+
Sbjct: 80 LSSCRAVHLPSGGQYKIQIFEKGDFSGQMYETTEDCPSIMEQFHMREIHSCKVLEGVWIF 139
Query: 104 FEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPI 142
+E N+RG ++L+K EY + W ++ S + SFR I
Sbjct: 140 YELPNYRGRQYLLDKKEYRKPIDWGAA--SPAVQSFRRI 176
>gi|89886227 absent in melanoma 1-like [Homo sapiens]
Length = 616
Score = 112 bits (280), Expect = 3e-25
Identities = 70/207 (33%), Positives = 103/207 (49%), Gaps = 13/207 (6%)
Query: 30 GTSPSPGTTLAPTTVPITSAKAAELPPGNYRLVVFELENFQGRRAEFSGECSNLADRGFD 89
GTS +L P + S + PG R VV+E FQGR E S + NL
Sbjct: 98 GTSDPSVGSLKPMRLGCPSVEK----PGEPRAVVYEAPGFQGRSWEVSRDIYNLQQPEDS 153
Query: 90 R------VRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIK 143
+ V S+ V G WV +E+ FRG ++LE+GEYP W+ W + L S R I+
Sbjct: 154 QSPHLASVGSLRVLGGCWVGYEKEGFRGHQYLLEEGEYPDWSHWGGY--DELLTSLRVIR 211
Query: 144 MDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRG 203
D + + LFE +F+G+ +E+ P + + ++ V SG WV YQ G+ G
Sbjct: 212 TDFGDPAVVLFEAMDFEGHGVEVS-KALPDVELVQHGPSTQAIHVLSGVWVAYQEVGFSG 270
Query: 204 YQYLLEPGDFRHWNEWGAFQPQMQSLR 230
QY+LE G +R+ +WGA + SL+
Sbjct: 271 EQYVLEKGVYRNCEDWGAGNSTLASLQ 297
Score = 94.0 bits (232), Expect = 1e-19
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 19/213 (8%)
Query: 34 SPGTTLAPTTVPITSAKAAELPPGNYRLVVFELENFQGRRAEFSGECSNLADRGFDR--- 90
+PGT +P I S + + +F E +G + + + N +G ++
Sbjct: 5 TPGTKWSPQG--IGSLRRVVWDYSTPEISLFSEEGLKGEQVKLTEALKN--SQGLEKPLQ 60
Query: 91 VRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQ--- 147
V S VSAG W+ + + F +ILE GEYP W +S S + S +P+++
Sbjct: 61 VASATVSAGLWLLYPKPLFEDTPYILEPGEYPTSEAWGTSDPS--VGSLKPMRLGCPSVE 118
Query: 148 ---EHKISLFEGANFKGNTIEIQGD----DAPSLWVYGFSDRVGSVKVSSGTWVGYQYPG 200
E + ++E F+G + E+ D P VGS++V G WVGY+ G
Sbjct: 119 KPGEPRAVVYEAPGFQGRSWEVSRDIYNLQQPEDSQSPHLASVGSLRVLGGCWVGYEKEG 178
Query: 201 YRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLR 233
+RG+QYLLE G++ W+ WG + + SLR +R
Sbjct: 179 FRGHQYLLEEGEYPDWSHWGGYDELLTSLRVIR 211
Score = 69.3 bits (168), Expect = 3e-12
Identities = 48/164 (29%), Positives = 79/164 (48%), Gaps = 4/164 (2%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ +F +F G FS E A R +S V G W+ F+++NF G+ IL +G
Sbjct: 312 KIQLFSRPDFLGDH--FSFEDDQAALPASFRPQSCRVHGGSWILFDETNFEGDQHILSEG 369
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGF 179
E+P T S L S + + + E I L+ F+G IE+ + SL GF
Sbjct: 370 EFPTL-TAMGCLASTVLGSLQKVSLHFSEPSIFLYGLECFEGKEIEL-SREVRSLQAEGF 427
Query: 180 SDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQ 223
++ V SV++ G WV ++ +RG Q+L+ + +W + Q
Sbjct: 428 NNHVLSVRIKGGIWVLCEHSDFRGRQWLVGSCEITNWLTYSGTQ 471
Score = 49.7 bits (117), Expect = 2e-06
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 61 LVVFELENFQGRRAEFSGECSNLADRGFDR-VRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
+ ++ LE F+G+ E S E +L GF+ V S+ + G WV E S+FRG +++
Sbjct: 400 IFLYGLECFEGKEIELSREVRSLQAEGFNNHVLSVRIKGGIWVLCEHSDFRGRQWLVGSC 459
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIK 143
E W T+S + R+ S PIK
Sbjct: 460 EITNWLTYSG---TQRVGSLYPIK 480
>gi|10518338 crystallin, gamma C [Homo sapiens]
Length = 174
Score = 112 bits (279), Expect = 4e-25
Identities = 61/175 (34%), Positives = 93/175 (53%), Gaps = 5/175 (2%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ +E FQGR E + +C NL F R SI V +G W+ +E+ N++G+ ++L +G
Sbjct: 3 KITFYEDRAFQGRSYETTTDCPNLQPY-FSRCNSIRVESGCWMLYERPNYQGQQYLLRRG 61
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGF 179
EYP + W S R P H++ L+E + KG +E+ +D PS+
Sbjct: 62 EYPDYQQWMGLSDSIRSCCLIP---QTVSHRLRLYEREDHKGLMMELS-EDCPSIQDRFH 117
Query: 180 SDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRD 234
+ S+ V G WV Y+ P YRG QYLL P ++R +WGA + SLRR+ D
Sbjct: 118 LSEIRSLHVLEGCWVLYELPNYRGRQYLLRPQEYRRCQDWGAMDAKAGSLRRVVD 172
>gi|148491057 crystallin, gamma A [Homo sapiens]
Length = 174
Score = 108 bits (271), Expect = 3e-24
Identities = 61/175 (34%), Positives = 96/175 (54%), Gaps = 5/175 (2%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ +E +FQGR +C NL F R SI V +G W+ +E+ N++G + L +G
Sbjct: 3 KITFYEDRDFQGRCYNCISDCPNLRVY-FSRCNSIRVDSGCWMLYERPNYQGHQYFLRRG 61
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGF 179
+YP + W SD + S R I HK+ L+E +++G E+ D A ++
Sbjct: 62 KYPDYQHWMGL--SDSVQSCRIIP-HTSSHKLRLYERDDYRGLMSELTDDCACVPELFRL 118
Query: 180 SDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRD 234
+ + S+ V G WV Y+ P YRG QYLL PGD+R +++WG ++ SLRR+ D
Sbjct: 119 PE-IYSLHVLEGCWVLYEMPNYRGRQYLLRPGDYRRYHDWGGADAKVGSLRRVTD 172
>gi|148491074 crystallin, gamma B [Homo sapiens]
Length = 175
Score = 107 bits (266), Expect = 1e-23
Identities = 58/175 (33%), Positives = 95/175 (54%), Gaps = 4/175 (2%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ +E FQGR E + +C NL F R SI V +G W+ +E+ N++G + L +G
Sbjct: 3 KITFYEDRAFQGRSYECTTDCPNLQPY-FSRCNSIRVESGCWMIYERPNYQGHQYFLRRG 61
Query: 120 EYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGF 179
EYP + W SD + S I + +++ +++ +G E+ DD S+
Sbjct: 62 EYPDYQQWMGL--SDSIRSCCLIPPHSGAYRMKIYDRDELRGQMSELT-DDCISVQDRFH 118
Query: 180 SDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRD 234
+ S+ V G+W+ Y+ P YRG QYLL PG++R + +WGA ++ SLRR+ D
Sbjct: 119 LTEIHSLNVLEGSWILYEMPNYRGRQYLLRPGEYRRFLDWGAPNAKVGSLRRVMD 173
>gi|90403579 beta-gamma crystallin domain containing 3 [Homo
sapiens]
Length = 1022
Score = 106 bits (264), Expect = 2e-23
Identities = 65/201 (32%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 56 PGNYRLVVFELENFQGRRAEFSGECSN----LADRG-FDRVRSIIVSAGPWVAFEQSNFR 110
P N +++++E +F G+ EFS + L + G F R+ SI V G WVA+E+ +F+
Sbjct: 528 PMNLKVIIYEKPHFHGQAKEFSEHIDSVPNFLKNNGDFHRIGSIRVIGGVWVAYEKEHFK 587
Query: 111 GEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDD 170
G+ F+LE+G++ N + S ++SFR ++ + E ++LFE G I+I +
Sbjct: 588 GQQFLLEEGDFEDSNACGAL--SSPILSFRYLQANFIESSVTLFESDLESGKFIDITNQE 645
Query: 171 APSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLR 230
L GF + S+ V SG WV YQ + G QY+LE G ++ + +WG + S+R
Sbjct: 646 ISDLEEIGFGSKTRSIHVKSGVWVAYQQKFFCGEQYILEKGKYKCFFDWGGSNNIIMSIR 705
Query: 231 RLRDKQWHLEGSFPVLATEPP 251
++ LE P+ EPP
Sbjct: 706 PIQ-----LE---PLGINEPP 718
Score = 70.1 bits (170), Expect = 2e-12
Identities = 45/156 (28%), Positives = 79/156 (50%), Gaps = 5/156 (3%)
Query: 82 NLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRP 141
NL + + S V +G W+A+ NF+G+ +LE+ ++ + ++ +S +
Sbjct: 464 NLEELNISKSVSFTVKSGVWLAYPDINFKGQATVLEE-DHGLFEISTAEMKSLHPLQMGG 522
Query: 142 IKMDAQEH-KISLFEGANFKGNTIEIQG--DDAPS-LWVYGFSDRVGSVKVSSGTWVGYQ 197
+K++ + K+ ++E +F G E D P+ L G R+GS++V G WV Y+
Sbjct: 523 LKVEMPMNLKVIIYEKPHFHGQAKEFSEHIDSVPNFLKNNGDFHRIGSIRVIGGVWVAYE 582
Query: 198 YPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLR 233
++G Q+LLE GDF N GA + S R L+
Sbjct: 583 KEHFKGQQFLLEEGDFEDSNACGALSSPILSFRYLQ 618
Score = 55.1 bits (131), Expect = 6e-08
Identities = 50/187 (26%), Positives = 79/187 (42%), Gaps = 14/187 (7%)
Query: 55 PPGNYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMF 114
PP + L F FQG +F+ E S+L S V G W+ + Q +
Sbjct: 717 PP--HLLKAFSKPGFQGECIDFTEETSDLTSL---MPCSFKVLRGCWLLYYQEDMFVNHC 771
Query: 115 ILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSL 174
+LE+G Y + S + ++ S +PI +E ISLF + +G + ++ + S+
Sbjct: 772 VLEEGLYA--DLTSCGCPASKVKSLKPIDYVFEEPSISLFALEHCEGRELHLE-EAVNSV 828
Query: 175 WVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGD------FRHWNEWGAFQPQMQS 228
SV V SG W+ Y+ + G Q LL P + F W G+ +P Q
Sbjct: 829 LNKDLHFYTQSVWVKSGLWIAYEGSNFLGRQILLRPNEIPNWTAFSRWKTIGSLRPMKQP 888
Query: 229 LRRLRDK 235
+R K
Sbjct: 889 AVYIRIK 895
Score = 48.5 bits (114), Expect = 5e-06
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 42 TTVPITSAKAAELPPGNY-----RLVVFELENFQGRRAEFSGECSNLADRGFD-RVRSII 95
T+ ++K L P +Y + +F LE+ +GR +++ ++ +S+
Sbjct: 782 TSCGCPASKVKSLKPIDYVFEEPSISLFALEHCEGRELHLEEAVNSVLNKDLHFYTQSVW 841
Query: 96 VSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDA 146
V +G W+A+E SNF G +L E P W +S R + S RP+K A
Sbjct: 842 VKSGLWIAYEGSNFLGRQILLRPNEIPNWTAFS---RWKTIGSLRPMKQPA 889
Score = 40.8 bits (94), Expect = 0.001
Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 7/121 (5%)
Query: 94 IIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTW-----SSSYRSDRLMSFRPIKMDAQE 148
I V G W+ +E+ +FRG+ +LE+GE W R+ L S + + D
Sbjct: 381 IKVVRGCWILYEKPHFRGQKCVLEEGEKVLNRDWILQNRRHPQRNFILGSLKRVLKDCSI 440
Query: 149 HKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLL 208
+I LF ++ + IQ P+L S V S V SG W+ Y ++G +L
Sbjct: 441 PEIELFPQSDPACCPVYIQ-RAVPNLEELNISKSV-SFTVKSGVWLAYPDINFKGQATVL 498
Query: 209 E 209
E
Sbjct: 499 E 499
Score = 29.6 bits (65), Expect = 2.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 186 VKVSSGTWVGYQYPGYRGYQYLLEPGD 212
+KV G W+ Y+ P +RG + +LE G+
Sbjct: 381 IKVVRGCWILYEKPHFRGQKCVLEEGE 407
>gi|13377002 crystallin, gamma D [Homo sapiens]
Length = 174
Score = 103 bits (257), Expect = 1e-22
Identities = 62/178 (34%), Positives = 95/178 (53%), Gaps = 11/178 (6%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEKG 119
++ ++E FQGR E S + NL R S V +G W+ +EQ N+ G + L +G
Sbjct: 3 KITLYEDRGFQGRHYECSSDHPNLQPY-LSRCNSARVDSGCWMLYEQPNYSGLQYFLRRG 61
Query: 120 EYPRWNTW---SSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWV 176
+Y W S S RS RL+ + H+I L+E +++G IE D +
Sbjct: 62 DYADHQQWMGLSDSVRSCRLIPH------SGSHRIRLYEREDYRGQMIEFTEDCSCLQDR 115
Query: 177 YGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRD 234
+ F++ + S+ V G+WV Y+ YRG QYLL PGD+R + +WGA ++ SLRR+ D
Sbjct: 116 FRFNE-IHSLNVLEGSWVLYELSNYRGRQYLLMPGDYRRYQDWGATNARVGSLRRVID 172
Score = 66.2 bits (160), Expect = 3e-11
Identities = 31/86 (36%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Query: 48 SAKAAELPP--GNYRLVVFELENFQGRRAEFSGECSNLADR-GFDRVRSIIVSAGPWVAF 104
S ++ L P G++R+ ++E E+++G+ EF+ +CS L DR F+ + S+ V G WV +
Sbjct: 75 SVRSCRLIPHSGSHRIRLYEREDYRGQMIEFTEDCSCLQDRFRFNEIHSLNVLEGSWVLY 134
Query: 105 EQSNFRGEMFILEKGEYPRWNTWSSS 130
E SN+RG ++L G+Y R+ W ++
Sbjct: 135 ELSNYRGRQYLLMPGDYRRYQDWGAT 160
>gi|21389517 gammaN-crystallin [Homo sapiens]
Length = 182
Score = 99.0 bits (245), Expect = 4e-21
Identities = 52/131 (39%), Positives = 81/131 (61%), Gaps = 5/131 (3%)
Query: 60 RLVVFELENFQGRRAEFSGECSNLADRGF-DRVRSIIVSAGPWVAFEQSNFRGEMFILEK 118
++ ++E ++F G++ E G+C N DRGF +RV SI V +G WV F +FRG+ FILE
Sbjct: 7 KITLYEGKHFTGQKLEVFGDCDNFQDRGFMNRVNSIHVESGAWVCFNHPDFRGQQFILEH 66
Query: 119 GEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYG 178
G+YP + W+S SD + S RP+ M + ++ +FEG NF G +E +D+P L G
Sbjct: 67 GDYPDFFRWNS--HSDHMGSCRPVGMHGEHFRLEIFEGCNFTGQCLEFL-EDSPFLQSRG 123
Query: 179 F-SDRVGSVKV 188
+ + V ++KV
Sbjct: 124 WVKNCVNTIKV 134
Score = 67.8 bits (164), Expect = 9e-12
Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Query: 144 MDAQEHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRG 203
M + KI+L+EG +F G +E+ GD + GF +RV S+ V SG WV + +P +RG
Sbjct: 1 MAQRSGKITLYEGKHFTGQKLEVFGD-CDNFQDRGFMNRVNSIHVESGAWVCFNHPDFRG 59
Query: 204 YQYLLEPGDFRHWNEWGAFQPQMQSLR 230
Q++LE GD+ + W + M S R
Sbjct: 60 QQFILEHGDYPDFFRWNSHSDHMGSCR 86
>gi|62988361 absent in melanoma 1 [Homo sapiens]
Length = 1723
Score = 98.2 bits (243), Expect = 6e-21
Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 19/155 (12%)
Query: 93 SIIVSAGPWVAFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQ----- 147
S+ V G W+ +E+ F+G FILE GEYP + W + + + S RP+KM +
Sbjct: 1158 SMKVHWGTWLIYEEPGFQGVPFILEPGEYPDLSFWDTE--AAYIGSMRPLKMGGRKVEFP 1215
Query: 148 -EHKISLFEGANFKGNTIEIQGDDAPSLWVYGFSDR-----------VGSVKVSSGTWVG 195
+ K+ ++E F+G +E++ + G ++ VGS+KV G WV
Sbjct: 1216 TDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGDDHLPFTSVGSMKVLRGIWVA 1275
Query: 196 YQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLR 230
Y+ PG+ G+QYLLE G++R W WG + ++QSLR
Sbjct: 1276 YEKPGFTGHQYLLEEGEYRDWKAWGGYNGELQSLR 1310
Score = 97.1 bits (240), Expect = 1e-20
Identities = 60/190 (31%), Positives = 98/190 (51%), Gaps = 18/190 (9%)
Query: 56 PGNYRLVVFELENFQGRRAEF-SGECSNLADRG------------FDRVRSIIVSAGPWV 102
P + ++VV+E F+G+ E +G CS + + G F V S+ V G WV
Sbjct: 1215 PTDPKVVVYEKPFFEGKCVELETGMCSFVMEGGETEEATGDDHLPFTSVGSMKVLRGIWV 1274
Query: 103 AFEQSNFRGEMFILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANF--K 160
A+E+ F G ++LE+GEY W W + L S RPI D + ++ NF K
Sbjct: 1275 AYEKPGFTGHQYLLEEGEYRDWKAWGGY--NGELQSLRPILGDFSNAHMIMYSEKNFGSK 1332
Query: 161 GNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWG 220
G++I++ G A +L G+ + S+ V SG WV Y+ P + G QY+L+ G + + +WG
Sbjct: 1333 GSSIDVLGIVA-NLKETGYGVKTQSINVLSGVWVAYENPDFTGEQYILDKGFYTSFEDWG 1391
Query: 221 AFQPQMQSLR 230
++ S++
Sbjct: 1392 GKNCKISSVQ 1401
Score = 94.0 bits (232), Expect = 1e-19
Identities = 61/182 (33%), Positives = 92/182 (50%), Gaps = 5/182 (2%)
Query: 55 PPGNYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMF 114
P ++ +F FQG F E ++ D F +S VS G WV ++ NF G +
Sbjct: 1411 PRRRNQIHLFSEPQFQGHSQSFE-ETTSQIDDSFS-TKSCRVSGGSWVVYDGENFTGNQY 1468
Query: 115 ILEKGEYPRWNTWSSSYRSDRLMSFRPIKMDAQEHKISLFEGANFKGNTIEIQGDDAPSL 174
+LE+G YP + + S R I ++ E I LFE +FKG IE+ + +L
Sbjct: 1469 VLEEGHYPCLSAMGCPPGAT-FKSLRFIDVEFSEPTIILFEREDFKGKKIELNAETV-NL 1526
Query: 175 WVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPGDFRHWNEWGAFQPQMQSLRRLRD 234
GF+ ++ SV+V G WV Y+Y YRG Q+LL P + +W E+ + Q+ SLR
Sbjct: 1527 RSLGFNTQIRSVQVIGGIWVTYEYGSYRGRQFLLSPAEVPNWYEFSGCR-QIGSLRPFVQ 1585
Query: 235 KQ 236
K+
Sbjct: 1586 KR 1587
Score = 69.7 bits (169), Expect = 2e-12
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 12/202 (5%)
Query: 43 TVPITSAKAAELPPGNYRLVVFELENFQGRRAEFSGECSNLADRGFDRVRSIIVSAGPWV 102
T+ + + +L P ++V++ + + E + + + V I V G W+
Sbjct: 1006 TMTLRGSVQNKLNPRPGKVVIYSEPDVSEKCIEVFSDIQDCSSWSLSPVILIKVVRGCWI 1065
Query: 103 AFEQSNFRGEMFILEKGEYPRWNTWS--------SSYRSDRLMSFRPIKMDAQEHKIS-- 152
+EQ NF G LE+GE W SD+ + I+ Q++++S
Sbjct: 1066 LYEQPNFEGHSIPLEEGELELSGLWGIEDILERHEEAESDKPVVIGSIRHVVQDYRVSHI 1125
Query: 153 -LFEGANFKGNTIEIQGDDAPSLWVYGFSDRVGSVKVSSGTWVGYQYPGYRGYQYLLEPG 211
LF G + DD + +G + S+KV GTW+ Y+ PG++G ++LEPG
Sbjct: 1126 DLFTEPEGLG-ILSSYFDDTEEMQGFGVMQKTCSMKVHWGTWLIYEEPGFQGVPFILEPG 1184
Query: 212 DFRHWNEWGAFQPQMQSLRRLR 233
++ + W + S+R L+
Sbjct: 1185 EYPDLSFWDTEAAYIGSMRPLK 1206
>gi|45387951 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 34.3 bits (77), Expect = 0.11
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTV-PITSAKAAELPPGNY 59
+S +A AT + P +G+ AP + PG T PTT P T+ + PPG+
Sbjct: 113 LSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSS 172
Query: 60 R 60
R
Sbjct: 173 R 173
>gi|210147493 transmembrane protein 108 [Homo sapiens]
Length = 575
Score = 34.3 bits (77), Expect = 0.11
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTV-PITSAKAAELPPGNY 59
+S +A AT + P +G+ AP + PG T PTT P T+ + PPG+
Sbjct: 113 LSTGPAPAAMATTSSKPEGRPRGQAAPTILLTKPPGATSRPTTAPPRTTTRRPPRPPGSS 172
Query: 60 R 60
R
Sbjct: 173 R 173
>gi|116284392 mucin 2 precursor [Homo sapiens]
Length = 5179
Score = 32.3 bits (72), Expect = 0.40
Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 6/41 (14%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLAPTTVPIT-SAKAAELPP 56
P P T PP T+PSP PTT PIT A LPP
Sbjct: 1484 PSPPTTTTTTPPPTTTPSP-----PTTTPITPPASTTTLPP 1519
Score = 31.2 bits (69), Expect = 0.90
Identities = 21/59 (35%), Positives = 22/59 (37%), Gaps = 12/59 (20%)
Query: 10 SATVAVNPGPDTKGKGAPPAGTSPSPGTTLA-----------PTTVPIT-SAKAAELPP 56
S P P T PP T+PSP TT PTT PIT LPP
Sbjct: 1579 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPP 1637
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/41 (43%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLAPTTVPIT-SAKAAELPP 56
P P T PP T+PSP PTT PIT LPP
Sbjct: 1523 PSPPTTTTTTPPPTTTPSP-----PTTTPITPPTSTTTLPP 1558
Score = 30.4 bits (67), Expect = 1.5
Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 17 PGPDTKGKGAPPAGTSPSP----GTTLAPTTVPITSAKAAELPP 56
P P T PP T+PSP TT PTT P PP
Sbjct: 1422 PSPPTTTTTTPPPTTTPSPPITTTTTPPPTTTPSPPISTTTTPP 1465
Score = 30.0 bits (66), Expect = 2.0
Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLA--PTTVPITSAKAAELPP 56
P P PP T+PSP TT PTT P PP
Sbjct: 1454 PSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPP 1495
Score = 30.0 bits (66), Expect = 2.0
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTT-----------LAPTTVPITSAKAAELPP 56
P P T PP T+PSP TT L PTT P PP
Sbjct: 1602 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPP 1652
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 2 SQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPP 56
S S+ T P T P T+PSP TT +P T +T+ LPP
Sbjct: 1700 SPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTT-----LPP 1749
Score = 28.9 bits (63), Expect = 4.5
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 8 SASATVAVNPGPDTKGKGAPPAGTSPSP----GTTLAPTTVPITSAKAAELPP 56
S T P P T +PP T+PSP TT PTT P + PP
Sbjct: 1642 SPPPTTTTTPPPTTTP--SPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPP 1692
Score = 28.5 bits (62), Expect = 5.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLAPTTVPITS 48
P P PP T+PSP TT P+ IT+
Sbjct: 1562 PSPPPTTTTTPPPTTTPSPPTTTTPSPPTITT 1593
Score = 27.7 bits (60), Expect = 9.9
Identities = 15/40 (37%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPP 56
P P T PP T TTL PTT P PP
Sbjct: 1399 PSPPTTTPSPPPTST-----TTLPPTTTPSPPTTTTTTPP 1433
Score = 27.7 bits (60), Expect = 9.9
Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 17 PGPDTKGKGAPPAGTSPSPGTTLAPTTVPITS 48
P P PP T+PSP TT P+ PIT+
Sbjct: 1641 PSPPPTTTTTPPPTTTPSPPTTTTPSP-PITT 1671
Score = 27.7 bits (60), Expect = 9.9
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 10 SATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAK---AAELPP 56
S+T +P P T +P T+PSP TT T P T++ LPP
Sbjct: 1716 SSTTTPSPPPTTMTTPSPT--TTPSPPTTTMTTLPPTTTSSPLTTTPLPP 1763
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 32.3 bits (72), Expect = 0.40
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 8 SASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPPG 57
S++ V P P G PP PS +T P +P+ +A PPG
Sbjct: 583 SSAGPPPVLPPPSLSSAGPPPVLPPPSLSSTAPPPVMPLPPLSSATPPPG 632
>gi|194272180 plexin B1 [Homo sapiens]
Length = 2135
Score = 32.0 bits (71), Expect = 0.53
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 15 VNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPI-----TSAKAAELPPG 57
V+P P +G +P T+P T AP T+P+ ++A A+++ PG
Sbjct: 680 VSPDPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPG 727
>gi|40254442 plexin B1 [Homo sapiens]
Length = 2135
Score = 32.0 bits (71), Expect = 0.53
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 15 VNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPI-----TSAKAAELPPG 57
V+P P +G +P T+P T AP T+P+ ++A A+++ PG
Sbjct: 680 VSPDPPARGGPSPSPPTAPKALATPAPDTLPVEPGAPSTATASDISPG 727
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 32.0 bits (71), Expect = 0.53
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTT--VPITSAKAAELPPG 57
+++A ++ A P P T A P G + SPGT+ +P T VP TSA A + PG
Sbjct: 205 VAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSA-AKKATPG 262
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 32.0 bits (71), Expect = 0.53
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1 MSQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTT--VPITSAKAAELPPG 57
+++A ++ A P P T A P G + SPGT+ +P T VP TSA A + PG
Sbjct: 205 VAEAPGVASPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSA-AKKATPG 262
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 31.6 bits (70), Expect = 0.69
Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 12 TVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPP 56
TVA N P G G P G P PG L P VP+T+ PP
Sbjct: 1036 TVAANIHPS--GSGPTPPGMPPMPGNILGP-RVPLTAPNGMYPPP 1077
>gi|45120115 hypothetical protein LOC56905 [Homo sapiens]
Length = 1047
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/117 (25%), Positives = 47/117 (40%), Gaps = 9/117 (7%)
Query: 5 AKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITS-AKAAELPPGNYRLVV 63
A S A +P P AP +P+ AP P+ A A+ PG+
Sbjct: 707 ALPSPPAVAVASPAPAPAPSPAPARAQAPASARDPAPAPAPVAGPAPASTSAPGD----- 761
Query: 64 FELE-NFQGRRAEFSGECS-NLADRGFDRVRSIIVSAGPWVAFEQSNFRGEMFILEK 118
LE +F G A S ++A +++R + +AGPW + +G +L K
Sbjct: 762 -SLEQHFTGLHASLCDAISGSVAHSPPEKLREWLETAGPWGQAAWQDCQGVQGLLAK 817
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 31.2 bits (69), Expect = 0.90
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 9/50 (18%)
Query: 16 NPG-PDTKGKGAPPAGTSPSP-GTTLAPTTVPIT-------SAKAAELPP 56
+PG P KG PPA T PSP GT P T P + S+K PP
Sbjct: 1323 SPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPP 1372
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 1 MSQAAKASASATVA---VNPGPDTKGKGAPPAGTSPSP---GTTLAPTTVPITSAKAAEL 54
M+ ++ A AT A + P KG PPA T PSP T +P P A
Sbjct: 913 MTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPS 972
Query: 55 PPG 57
P G
Sbjct: 973 PKG 975
Score = 30.0 bits (66), Expect = 2.0
Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 8 SASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVP--ITSAKAAELP 55
S + A P P KG PPA T PSP + A T +P + AA LP
Sbjct: 1018 SPKGSPAATPFP--KGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLP 1065
Score = 29.6 bits (65), Expect = 2.6
Identities = 17/38 (44%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 19 PDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAAELPP 56
P KG PPA T PSP + A T P K A PP
Sbjct: 1003 PSPKGAPTPPAVTPPSPKGSPAATPFP----KGASTPP 1036
Score = 28.9 bits (63), Expect = 4.5
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 1 MSQAAKASASATVAVNPG----PDTKGKGAPPAGTSPSP---GTTLAPTTVPITSAKAAE 53
+ + A + +AT+ G P KG PPA T PSP T +P P+ A
Sbjct: 1052 LPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSPKGAPMPPAATPP 1111
Query: 54 LPPG 57
P G
Sbjct: 1112 SPKG 1115
Score = 28.1 bits (61), Expect = 7.6
Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
Query: 19 PDTKGKGAPPAGT------SPSPGTTLAPTTVPITSAKAAELPP 56
P +K +PPA T +PSP L P V S K A PP
Sbjct: 1574 PSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPP 1617
Score = 27.7 bits (60), Expect = 9.9
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 19 PDTKGKGAPPAGTSPSP---GTTLAPTTVPITSAKAAELPPGN 58
P KG PPA T PSP T +P P A P G+
Sbjct: 980 PSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGS 1022
>gi|169202626 PREDICTED: similar to mucin 5, partial [Homo sapiens]
Length = 2013
Score = 30.8 bits (68), Expect = 1.2
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 2 SQAAKASASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITSAKAA 52
+ +++ T P T+ A PA T+ PG T P+ VP TS +A
Sbjct: 1898 AHTTSTTSAPTARTTSAPTTRTTSASPASTTSGPGNT--PSPVPTTSTISA 1946
Score = 28.1 bits (61), Expect = 7.6
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 8 SASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPIT 47
+++ T + P T AP T+ PGTT P+ VP T
Sbjct: 1976 TSAPTSSTTSSPQTSTTSAPTTSTTSGPGTT--PSPVPTT 2013
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 30.8 bits (68), Expect = 1.2
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 9 ASATVAVNPGPDTKGKGAPPAGTSPSPGTTLAPTTVPITS 48
A V P P+++GK A SPSP T AP VP+TS
Sbjct: 893 APGDTGVGP-PNSEGKDPAGAYRSPSPQGTKAPRFVPLTS 931
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.133 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,293,817
Number of Sequences: 37866
Number of extensions: 566903
Number of successful extensions: 4166
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 3492
Number of HSP's gapped (non-prelim): 625
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.