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Search of human proteins with 4503053
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
(354 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo sapi... 751 0.0
gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo sap... 375 e-104
gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo sap... 353 1e-97
gi|11141887 brain link protein-1 [Homo sapiens] 313 1e-85
gi|38372931 brevican isoform 2 [Homo sapiens] 224 7e-59
gi|38372935 brevican isoform 1 [Homo sapiens] 224 7e-59
gi|187607300 versican isoform 2 [Homo sapiens] 217 1e-56
gi|21361116 versican isoform 1 [Homo sapiens] 217 1e-56
gi|126090892 aggrecan isoform 2 precursor [Homo sapiens] 212 4e-55
gi|126090883 aggrecan isoform 1 precursor [Homo sapiens] 212 4e-55
gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens] 210 2e-54
gi|61743978 stabilin 1 precursor [Homo sapiens] 66 4e-11
gi|61743980 stabilin 2 precursor [Homo sapiens] 65 7e-11
gi|26051243 tumor necrosis factor, alpha-induced protein 6 precu... 63 5e-10
gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens] 45 8e-05
gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1 [... 43 5e-04
gi|4503173 coxsackie virus and adenovirus receptor precursor [Ho... 40 0.002
gi|154426280 V-set and immunoglobulin domain containing 4 isofor... 39 0.005
gi|6005958 V-set and immunoglobulin domain containing 4 isoform ... 39 0.005
gi|11386199 poliovirus receptor-related 3 [Homo sapiens] 39 0.009
gi|61966777 V-set and immunoglobulin domain containing 8 [Homo s... 35 0.078
gi|9055238 voltage-gated sodium channel beta-3 subunit precursor... 33 0.39
gi|93587332 voltage-gated sodium channel beta-3 subunit precurso... 33 0.39
gi|148664224 adhesion molecule, interacts with CXADR antigen 1 i... 33 0.51
gi|148664207 adhesion molecule, interacts with CXADR antigen 1 i... 33 0.51
gi|63054855 erythroblast membrane-associated protein precursor [... 32 0.66
gi|19923536 erythroblast membrane-associated protein precursor [... 32 0.66
gi|110349719 titin isoform N2-A [Homo sapiens] 32 0.86
gi|110349717 titin isoform novex-2 [Homo sapiens] 32 0.86
gi|110349713 titin isoform novex-1 [Homo sapiens] 32 0.86
>gi|4503053 hyaluronan and proteoglycan link protein 1 [Homo
sapiens]
Length = 354
Score = 751 bits (1938), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP 60
MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP
Sbjct: 1 MKSLLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLP 60
Query: 61 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS 120
CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS
Sbjct: 61 CKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDS 120
Query: 121 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA 180
DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA
Sbjct: 121 DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQA 180
Query: 181 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF 240
CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF
Sbjct: 181 CLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGF 240
Query: 241 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG 300
WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG
Sbjct: 241 WDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILG 300
Query: 301 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN 354
YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN
Sbjct: 301 YDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRAYN 354
>gi|30102948 hyaluronan and proteoglycan link protein 3 [Homo
sapiens]
Length = 360
Score = 375 bits (963), Expect = e-104
Identities = 175/318 (55%), Positives = 220/318 (69%), Gaps = 2/318 (0%)
Query: 36 NGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVF 95
NG L+VE + +F+++G +V LPC++ +P ++R+KW KL+ + E DV
Sbjct: 45 NGVKLVVETPEETLFTYQGASVILPCRYRYEPALVSP--RRVRVKWWKLSENGAPEKDVL 102
Query: 96 VSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALD 155
V++G +++G YQGRV L+ + D SL I DL LEDYGRY+CEVI+GLED++ +V L+
Sbjct: 103 VAIGLRHRSFGDYQGRVHLRQDKEHDVSLEIQDLRLEDYGRYRCEVIDGLEDESGLVELE 162
Query: 156 LQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSV 215
L+GVVFPY GRY NFHE QQ C +Q AV+ASF+QL+ AW GLDWCNAGWL D +V
Sbjct: 163 LRGVVFPYQSPNGRYQFNFHEGQQVCAEQAAVVASFEQLFRAWEEGLDWCNAGWLQDATV 222
Query: 216 QYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEA 275
QYPI PR+PCGG PGVR+YG + RYDVFCF + GR YYL HP KLT EA
Sbjct: 223 QYPIMLPRQPCGGPGLAPGVRSYGPRHRRLHRYDVFCFATALKGRVYYLEHPEKLTLTEA 282
Query: 276 VQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV 335
+AC D A IAKVGQ+FAAWK G DRCDAGWLADGSVRYP+ P C P E VR
Sbjct: 283 REACQEDDATIAKVGQLFAAWKFHGLDRCDAGWLADGSVRYPVVHPHPNCGPPEPGVRSF 342
Query: 336 GFPDKKHKLYGVYCFRAY 353
GFPD + +LYGVYC+R +
Sbjct: 343 GFPDPQSRLYGVYCYRQH 360
>gi|30794472 hyaluronan and proteoglycan link protein 4 [Homo
sapiens]
Length = 402
Score = 353 bits (906), Expect = 1e-97
Identities = 169/335 (50%), Positives = 221/335 (65%), Gaps = 13/335 (3%)
Query: 28 RAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSD 87
+ +H+ ++V+ +V SHRGG + LPC+++ + A G +R+KWTK+ D
Sbjct: 35 KVVHVLEGESGSVVVQTAPGQVVSHRGGTIVLPCRYHYEAAAHGHD--GVRLKWTKVV-D 91
Query: 88 YLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLED 147
L DVFV++G + +G Y+GR L+G DASLV+ ++TL+DYGRY+CEV LED
Sbjct: 92 PLAFTDVFVALGPQHRAFGSYRGRAELQGDGPGDASLVLRNVTLQDYGRYECEVTNELED 151
Query: 148 DTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNA 207
D +V LDL+GVVFPY PR GRY L F EAQ+AC +QD ++AS +QL+ AWR GLDWCNA
Sbjct: 152 DAGMVKLDLEGVVFPYHPRGGRYKLTFAEAQRACAEQDGILASAEQLHAAWRDGLDWCNA 211
Query: 208 GWLSDGSVQYPITKPREPC----------GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNF 257
GWL DGSVQYP+ +PREPC GG + G+RNYG+ + RYD FCFTSN
Sbjct: 212 GWLRDGSVQYPVNRPREPCGGLGGTGSAGGGGDANGGLRNYGYRHNAEERYDAFCFTSNL 271
Query: 258 NGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYP 317
GR ++L + + A +AC GA +AKVGQ+FAAWK+ DRC AGWLADGS RYP
Sbjct: 272 PGRVFFLKPLRPVPFSGAARACAARGAAVAKVGQLFAAWKLQLLDRCTAGWLADGSARYP 331
Query: 318 ISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFRA 352
I PR RC VR +GFPD +L+GVYC+RA
Sbjct: 332 IVNPRARCGGRRPGVRSLGFPDATRRLFGVYCYRA 366
>gi|11141887 brain link protein-1 [Homo sapiens]
Length = 340
Score = 313 bits (803), Expect = 1e-85
Identities = 151/330 (45%), Positives = 207/330 (62%), Gaps = 11/330 (3%)
Query: 22 YTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKW 81
+T+ H + GPH L+ + SHRG TLPC P ++ +++W
Sbjct: 18 FTIFHKAQGDPASHPGPHYLLPPIHEVIHSHRGATATLPCVLGTTPPSY-------KVRW 70
Query: 82 TKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEV 141
+K+ L+E + ++ G H + YG GR ++ G DASLVI + LED GRY+CE+
Sbjct: 71 SKVEPGELRETLILITNGLHARGYGPLGGRARMRRGHRLDASLVIAGVRLEDEGRYRCEL 130
Query: 142 IEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGG 201
I G+ED++V + L L+GVVFPY P GRY N++EA+QAC +QD +A++ QLY AW G
Sbjct: 131 INGIEDESVALTLSLEGVVFPYQPSRGRYQFNYYEAKQACEEQDGRLATYSQLYQAWTEG 190
Query: 202 LDWCNAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRF 261
LDWCNAGWL +GSV+YP+ R PCGG+ PG+R+YG D+ + RYD FCFTS G+
Sbjct: 191 LDWCNAGWLLEGSVRYPVLTARAPCGGRGR-PGIRSYGPRDRMRDRYDAFCFTSALAGQV 249
Query: 262 YYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRP 321
+++ P +LT EA AC GA +AKVG ++AAWK G D+CD GWLADGSVR+PI+ P
Sbjct: 250 FFV--PGRLTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTP 307
Query: 322 RRRCSP-TEAAVRFVGFPDKKHKLYGVYCF 350
R RC + VR GFP + YG YC+
Sbjct: 308 RPRCGGLPDPGVRSFGFPRPQQAAYGTYCY 337
Score = 83.2 bits (204), Expect = 3e-16
Identities = 40/86 (46%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 172 LNFHEAQQACLDQDAVIASFDQLYDAWR-GGLDWCNAGWLSDGSVQYPITKPREPCGGQN 230
L EA AC + AV+A LY AW+ GLD C+ GWL+DGSV++PIT PR CGG
Sbjct: 256 LTLSEAHAACRRRGAVVAKVGHLYAAWKFSGLDQCDGGWLADGSVRFPITTPRPRCGGLP 315
Query: 231 TVPGVRNYGFWDKDKSRYDVFCFTSN 256
PGVR++GF ++ Y +C+ N
Sbjct: 316 D-PGVRSFGFPRPQQAAYGTYCYAEN 340
>gi|38372931 brevican isoform 2 [Homo sapiens]
Length = 671
Score = 224 bits (572), Expect = 7e-59
Identities = 132/310 (42%), Positives = 178/310 (57%), Gaps = 17/310 (5%)
Query: 54 GGNVTLPCK--FYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGR 111
GG +T+PC + R P + + + R+KWT L+ +E +V V+ G K Y+ R
Sbjct: 50 GGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRG--REAEVLVARGVRVKVNEAYRFR 107
Query: 112 VFLKG--GSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGR 169
V L S +D SL +++L D G Y+CEV G++D + V + ++GVVF Y R
Sbjct: 108 VALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSAR 167
Query: 170 YNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPC-GG 228
Y +F AQ+AC A IA+ +QLY A+ GG + C+AGWLSD +V+YPI PRE C G
Sbjct: 168 YAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREACYGD 227
Query: 229 QNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAK 288
+ PGVRNYG D D YDV+C+ + NG + P KLT +EA C GA+IA
Sbjct: 228 MDGFPGVRNYGVVDPD-DLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIAT 286
Query: 289 VGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV-------GFPDKK 341
GQ++AAW G D C GWLADGSVRYPI P +RC V+ + GFP+ K
Sbjct: 287 TGQLYAAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFLFPNQTGFPN-K 344
Query: 342 HKLYGVYCFR 351
H + VYCFR
Sbjct: 345 HSRFNVYCFR 354
>gi|38372935 brevican isoform 1 [Homo sapiens]
Length = 911
Score = 224 bits (572), Expect = 7e-59
Identities = 132/310 (42%), Positives = 178/310 (57%), Gaps = 17/310 (5%)
Query: 54 GGNVTLPCK--FYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGR 111
GG +T+PC + R P + + + R+KWT L+ +E +V V+ G K Y+ R
Sbjct: 50 GGALTIPCHVHYLRPPPSRRAVLGSPRVKWTFLSRG--REAEVLVARGVRVKVNEAYRFR 107
Query: 112 VFLKG--GSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGR 169
V L S +D SL +++L D G Y+CEV G++D + V + ++GVVF Y R
Sbjct: 108 VALPAYPASLTDVSLALSELRPNDSGIYRCEVQHGIDDSSDAVEVKVKGVVFLYREGSAR 167
Query: 170 YNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPC-GG 228
Y +F AQ+AC A IA+ +QLY A+ GG + C+AGWLSD +V+YPI PRE C G
Sbjct: 168 YAFSFSGAQEACARIGAHIATPEQLYAAYLGGYEQCDAGWLSDQTVRYPIQTPREACYGD 227
Query: 229 QNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAK 288
+ PGVRNYG D D YDV+C+ + NG + P KLT +EA C GA+IA
Sbjct: 228 MDGFPGVRNYGVVDPD-DLYDVYCYAEDLNGELFLGDPPEKLTLEEARAYCQERGAEIAT 286
Query: 289 VGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV-------GFPDKK 341
GQ++AAW G D C GWLADGSVRYPI P +RC V+ + GFP+ K
Sbjct: 287 TGQLYAAWD-GGLDHCSPGWLADGSVRYPIVTPSQRCGGGLPGVKTLFLFPNQTGFPN-K 344
Query: 342 HKLYGVYCFR 351
H + VYCFR
Sbjct: 345 HSRFNVYCFR 354
>gi|187607300 versican isoform 2 [Homo sapiens]
Length = 655
Score = 217 bits (553), Expect = 1e-56
Identities = 126/313 (40%), Positives = 182/313 (58%), Gaps = 19/313 (6%)
Query: 55 GNVTLPCKFYRDPTAFGS--GIHKIRIKWTKLTSDY----LKEVDVFVSMGYHKKTYGGY 108
G V+LPC F PT S +RIKW+K+ D LKE V V+ + K Y
Sbjct: 38 GKVSLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDY 97
Query: 109 QGRVFLKGGSDS--DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPR 166
+GRV + ++ DASL + L D G Y+C+V+ G+ED V+L + GVVF Y
Sbjct: 98 KGRVSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAA 157
Query: 167 LGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPC 226
RY LNF AQ+ACLD AVIA+ +QL+ A+ G + C+AGWL+D +V+YPI PR C
Sbjct: 158 TSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGC 217
Query: 227 -GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQ 285
G + GVR YGF ++ YDV+C+ + +G ++L P+K T++EA + C N A+
Sbjct: 218 YGDKMGKAGVRTYGFRSPQET-YDVYCYVDHLDGDVFHLTVPSKFTFEEAAKECENQDAR 276
Query: 286 IAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV-------GFP 338
+A VG++ AAW+ G+D+CD GWL+D SVR+P++ R +C VR + GFP
Sbjct: 277 LATVGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFENQTGFP 335
Query: 339 DKKHKLYGVYCFR 351
+ + YCF+
Sbjct: 336 PPDSR-FDAYCFK 347
>gi|21361116 versican isoform 1 [Homo sapiens]
Length = 3396
Score = 217 bits (553), Expect = 1e-56
Identities = 126/313 (40%), Positives = 182/313 (58%), Gaps = 19/313 (6%)
Query: 55 GNVTLPCKFYRDPTAFGS--GIHKIRIKWTKLTSDY----LKEVDVFVSMGYHKKTYGGY 108
G V+LPC F PT S +RIKW+K+ D LKE V V+ + K Y
Sbjct: 38 GKVSLPCHFSTMPTLPPSYNTSEFLRIKWSKIEVDKNGKDLKETTVLVAQNGNIKIGQDY 97
Query: 109 QGRVFLKGGSDS--DASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPR 166
+GRV + ++ DASL + L D G Y+C+V+ G+ED V+L + GVVF Y
Sbjct: 98 KGRVSVPTHPEAVGDASLTVVKLLASDAGLYRCDVMYGIEDTQDTVSLTVDGVVFHYRAA 157
Query: 167 LGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPC 226
RY LNF AQ+ACLD AVIA+ +QL+ A+ G + C+AGWL+D +V+YPI PR C
Sbjct: 158 TSRYTLNFEAAQKACLDVGAVIATPEQLFAAYEDGFEQCDAGWLADQTVRYPIRAPRVGC 217
Query: 227 -GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQ 285
G + GVR YGF ++ YDV+C+ + +G ++L P+K T++EA + C N A+
Sbjct: 218 YGDKMGKAGVRTYGFRSPQET-YDVYCYVDHLDGDVFHLTVPSKFTFEEAAKECENQDAR 276
Query: 286 IAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV-------GFP 338
+A VG++ AAW+ G+D+CD GWL+D SVR+P++ R +C VR + GFP
Sbjct: 277 LATVGELQAAWR-NGFDQCDYGWLSDASVRHPVTVARAQCGGGLLGVRTLYRFENQTGFP 335
Query: 339 DKKHKLYGVYCFR 351
+ + YCF+
Sbjct: 336 PPDSR-FDAYCFK 347
>gi|126090892 aggrecan isoform 2 precursor [Homo sapiens]
Length = 2416
Score = 212 bits (540), Expect = 4e-55
Identities = 129/343 (37%), Positives = 182/343 (53%), Gaps = 30/343 (8%)
Query: 23 TLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDP-----TAFGSGIHKI 77
T DHD ++ + L V G ++T+PC F DP TA +
Sbjct: 22 TSDHDNSLSVSIPQPSPLRVLL---------GTSLTIPCYFI-DPMHPVTTAPSTAPLAP 71
Query: 78 RIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYG 135
RIKW++++ + KEV + V+ + YQ +V L SDA+L + L D G
Sbjct: 72 RIKWSRVSKE--KEVVLLVATEGRVRVNSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSG 129
Query: 136 RYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLY 195
Y+CEV+ G+ED + + ++G+VF Y RY L+F AQ+ACL A+IA+ +QL
Sbjct: 130 VYRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQ 189
Query: 196 DAWRGGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFT 254
A+ G C+AGWL+D +V+YPI PRE C G ++ PGVR YG D +++ YDV+CF
Sbjct: 190 AAYEDGFHQCDAGWLADQTVRYPIHTPREGCYGDKDEFPGVRTYGIRDTNET-YDVYCFA 248
Query: 255 SNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSV 314
G +Y P K T+ EA C GA++A GQ++ AW+ G D C AGWLAD SV
Sbjct: 249 EEMEGEVFYATSPEKFTFQEAANECRRLGARLATTGQLYLAWQ-AGMDMCSAGWLADRSV 307
Query: 315 RYPISRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCF 350
RYPIS+ R C VR V G+PD + Y C+
Sbjct: 308 RYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSR-YDAICY 349
Score = 169 bits (429), Expect = 3e-42
Identities = 91/202 (45%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 158 GVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQY 217
GVVF Y P RY+L F EAQQACL AVIAS +QL A+ G + C+AGWL D +V+Y
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 218 PITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAV 276
PI PR PC G +++ PGVR YG ++ YDV+CF G ++ + T+ EA+
Sbjct: 537 PIVSPRTPCVGDKDSSPGVRTYGVRPSTET-YDVYCFVDRLEGEVFFATRLEQFTFQEAL 595
Query: 277 QACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV- 335
+ C + A +A GQ++AAW G D+C AGWLADGS+RYPI PR C + VR V
Sbjct: 596 EFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGGDKPGVRTVY 654
Query: 336 ------GFPDKKHKLYGVYCFR 351
G PD + + +CFR
Sbjct: 655 LYPNQTGLPDPLSR-HHAFCFR 675
Score = 73.9 bits (180), Expect = 2e-13
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 148 DTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNA 207
D A +++G VF Y ++ F EA C A +A+ QLY AW+ G+D C+A
Sbjct: 243 DVYCFAEEMEGEVF-YATSPEKFT--FQEAANECRRLGARLATTGQLYLAWQAGMDMCSA 299
Query: 208 GWLSDGSVQYPITKPREPCGGQ----NTVPGVRNYGFWDKDKSRYDVFCFT 254
GWL+D SV+YPI+K R CGG TV N + SRYD C+T
Sbjct: 300 GWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSRYDAICYT 350
>gi|126090883 aggrecan isoform 1 precursor [Homo sapiens]
Length = 2317
Score = 212 bits (540), Expect = 4e-55
Identities = 129/343 (37%), Positives = 182/343 (53%), Gaps = 30/343 (8%)
Query: 23 TLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDP-----TAFGSGIHKI 77
T DHD ++ + L V G ++T+PC F DP TA +
Sbjct: 22 TSDHDNSLSVSIPQPSPLRVLL---------GTSLTIPCYFI-DPMHPVTTAPSTAPLAP 71
Query: 78 RIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSDSDASLVITDLTLEDYG 135
RIKW++++ + KEV + V+ + YQ +V L SDA+L + L D G
Sbjct: 72 RIKWSRVSKE--KEVVLLVATEGRVRVNSAYQDKVSLPNYPAIPSDATLEVQSLRSNDSG 129
Query: 136 RYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLY 195
Y+CEV+ G+ED + + ++G+VF Y RY L+F AQ+ACL A+IA+ +QL
Sbjct: 130 VYRCEVMHGIEDSEATLEVVVKGIVFHYRAISTRYTLDFDRAQRACLQNSAIIATPEQLQ 189
Query: 196 DAWRGGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFT 254
A+ G C+AGWL+D +V+YPI PRE C G ++ PGVR YG D +++ YDV+CF
Sbjct: 190 AAYEDGFHQCDAGWLADQTVRYPIHTPREGCYGDKDEFPGVRTYGIRDTNET-YDVYCFA 248
Query: 255 SNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSV 314
G +Y P K T+ EA C GA++A GQ++ AW+ G D C AGWLAD SV
Sbjct: 249 EEMEGEVFYATSPEKFTFQEAANECRRLGARLATTGQLYLAWQ-AGMDMCSAGWLADRSV 307
Query: 315 RYPISRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCF 350
RYPIS+ R C VR V G+PD + Y C+
Sbjct: 308 RYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSR-YDAICY 349
Score = 169 bits (429), Expect = 3e-42
Identities = 91/202 (45%), Positives = 120/202 (59%), Gaps = 11/202 (5%)
Query: 158 GVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQY 217
GVVF Y P RY+L F EAQQACL AVIAS +QL A+ G + C+AGWL D +V+Y
Sbjct: 477 GVVFHYRPGPTRYSLTFEEAQQACLRTGAVIASPEQLQAAYEAGYEQCDAGWLRDQTVRY 536
Query: 218 PITKPREPC-GGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAV 276
PI PR PC G +++ PGVR YG ++ YDV+CF G ++ + T+ EA+
Sbjct: 537 PIVSPRTPCVGDKDSSPGVRTYGVRPSTET-YDVYCFVDRLEGEVFFATRLEQFTFQEAL 595
Query: 277 QACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV- 335
+ C + A +A GQ++AAW G D+C AGWLADGS+RYPI PR C + VR V
Sbjct: 596 EFCESHNATLATTGQLYAAWS-RGLDKCYAGWLADGSLRYPIVTPRPACGGDKPGVRTVY 654
Query: 336 ------GFPDKKHKLYGVYCFR 351
G PD + + +CFR
Sbjct: 655 LYPNQTGLPDPLSR-HHAFCFR 675
Score = 73.9 bits (180), Expect = 2e-13
Identities = 44/111 (39%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 148 DTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNA 207
D A +++G VF Y ++ F EA C A +A+ QLY AW+ G+D C+A
Sbjct: 243 DVYCFAEEMEGEVF-YATSPEKFT--FQEAANECRRLGARLATTGQLYLAWQAGMDMCSA 299
Query: 208 GWLSDGSVQYPITKPREPCGGQ----NTVPGVRNYGFWDKDKSRYDVFCFT 254
GWL+D SV+YPI+K R CGG TV N + SRYD C+T
Sbjct: 300 GWLADRSVRYPISKARPNCGGNLLGVRTVYVHANQTGYPDPSSRYDAICYT 350
>gi|118600983 chondroitin sulfate proteoglycan 3 [Homo sapiens]
Length = 1321
Score = 210 bits (534), Expect = 2e-54
Identities = 135/363 (37%), Positives = 194/363 (53%), Gaps = 25/363 (6%)
Query: 4 LLLLVLISICWADHLSDNYTLDHDRAIHIQAENGPHLLVEAEQAKVFSHRGGNVTLPCKF 63
LL+L ++ + + + T +R +H+Q V+A A++ V LPC F
Sbjct: 11 LLMLQMLLFVAGEQGTQDITDASERGLHMQKLGSGS--VQAALAEL-------VALPCLF 61
Query: 64 YRDPTAFGSGIHKIRIKWTKL--TSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKG--GSD 119
P + RIKWTK+ S +++ + V+ + +QGRV L
Sbjct: 62 TLQPRP-SAARDAPRIKWTKVRTASGQRQDLPILVAKDNVVRVAKSWQGRVSLPSYPRRR 120
Query: 120 SDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQ 179
++A+L++ L D G Y+C+V+ G+ED+ +V L++ GVVF Y RY L F EAQ+
Sbjct: 121 ANATLLLGPLRASDSGLYRCQVVRGIEDEQDLVPLEVTGVVFHYRSARDRYALTFAEAQE 180
Query: 180 ACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPC-GGQNTVPGVRNY 238
AC A+IA+ L A+ G D C+AGWLSD +V+YPIT+ R C G ++++PGVR+Y
Sbjct: 181 ACRLSSAIIAAPRHLQAAFEDGFDNCDAGWLSDRTVRYPITQSRPGCYGDRSSLPGVRSY 240
Query: 239 GFWDKDKSRYDVFCFTSNFNGRFYYLIHPTKLTYDEAVQACLNDGAQIAKVGQIFAAWKI 298
G + YDV+CF G +Y+ +LT A C GA +A VGQ+ AW
Sbjct: 241 G-RRNPQELYDVYCFARELGGEVFYVGPARRLTLAGARAQCRRQGAALASVGQLHLAWH- 298
Query: 299 LGYDRCDAGWLADGSVRYPISRPRRRCSPTEAAVRFV-------GFPDKKHKLYGVYCFR 351
G D+CD GWLADGSVRYPI PRRRC VR V GFP + + YCFR
Sbjct: 299 EGLDQCDPGWLADGSVRYPIQTPRRRCGGPAPGVRTVYRFANRTGFPSPAER-FDAYCFR 357
Query: 352 AYN 354
A++
Sbjct: 358 AHH 360
>gi|61743978 stabilin 1 precursor [Homo sapiens]
Length = 2570
Score = 66.2 bits (160), Expect = 4e-11
Identities = 36/86 (41%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 168 GRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREPCG 227
G Y LNF EA+ AC Q AV+ASF QL A + G C GWL++GS +P+ P CG
Sbjct: 2217 GPYGLNFSEAEAACEAQGAVLASFPQLSAAQQLGFHLCLMGWLANGSTAHPVVFPVADCG 2276
Query: 228 GQNTVPGVRNYGFWDKDKSRYDVFCF 253
N G+ + G R+D +CF
Sbjct: 2277 --NGRVGIVSLGARKNLSERWDAYCF 2300
Score = 53.1 bits (126), Expect = 4e-07
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 21/154 (13%)
Query: 205 CNAGWLSDGSVQYPITKPR-EPCGGQNTVPGVRNYGFWDKDKSRYDVFCFTSNFNGRFYY 263
C+AG++ DG ++P + C GQ D C +F +
Sbjct: 2162 CHAGYVGDGLQCLEESEPPVDRCLGQ-------------PPPCHSDAMCTDLHFQEKRAG 2208
Query: 264 LIH------PTKLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYP 317
+ H P L + EA AC GA +A Q+ AA + LG+ C GWLA+GS +P
Sbjct: 2209 VFHLQATSGPYGLNFSEAEAACEAQGAVLASFPQLSAAQQ-LGFHLCLMGWLANGSTAHP 2267
Query: 318 ISRPRRRCSPTEAAVRFVGFPDKKHKLYGVYCFR 351
+ P C + +G + + YCFR
Sbjct: 2268 VVFPVADCGNGRVGIVSLGARKNLSERWDAYCFR 2301
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 65.5 bits (158), Expect = 7e-11
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 160 VFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPI 219
VF LG+Y L F +A++AC ++ A +A+++QL A + C+AGWL G V YP
Sbjct: 2199 VFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCSAGWLETGRVAYPT 2258
Query: 220 TKPREPCGGQNTVPGVRNYGFWDKDKSRYDVFCF 253
+ CG + V G+ +YG +DVFC+
Sbjct: 2259 AFASQNCG--SGVVGIVDYGPRPNKSEMWDVFCY 2290
Score = 55.8 bits (133), Expect = 6e-08
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 269 KLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPT 328
KLT+D+A +AC N+ A +A Q+ A K Y C AGWL G V YP + + C
Sbjct: 2210 KLTFDKAREACANEAATMATYNQLSYAQKAK-YHLCSAGWLETGRVAYPTAFASQNCGSG 2268
Query: 329 EAAVRFVGFPDKKHKLYGVYCFR 351
+ G K +++ V+C+R
Sbjct: 2269 VVGIVDYGPRPNKSEMWDVFCYR 2291
>gi|26051243 tumor necrosis factor, alpha-induced protein 6
precursor [Homo sapiens]
Length = 277
Score = 62.8 bits (151), Expect = 5e-10
Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 166 RLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWCNAGWLSDGSVQYPITKPREP 225
R G+Y L + EA+ C + +A++ QL A + G C AGW++ G V YPI KP
Sbjct: 43 RSGKYKLTYAEAKAVCEFEGGHLATYKQLEAARKIGFHVCAAGWMAKGRVGYPIVKPGPN 102
Query: 226 CGGQNTVPGVRNYGFWDKDKSRYDVFCF 253
CG T G+ +YG R+D +C+
Sbjct: 103 CGFGKT--GIIDYGIRLNRSERWDAYCY 128
Score = 55.1 bits (131), Expect = 1e-07
Identities = 30/85 (35%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 269 KLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPT 328
KLTY EA C +G +A Q+ AA KI G+ C AGW+A G V YPI +P C
Sbjct: 48 KLTYAEAKAVCEFEGGHLATYKQLEAARKI-GFHVCAAGWMAKGRVGYPIVKPGPNCGFG 106
Query: 329 EAAVRFVGFPDKKHKLYGVYCFRAY 353
+ + G + + + YC+ +
Sbjct: 107 KTGIIDYGIRLNRSERWDAYCYNPH 131
>gi|5031561 transmembrane glycoprotein A33 precursor [Homo sapiens]
Length = 319
Score = 45.4 bits (106), Expect = 8e-05
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 8/111 (7%)
Query: 42 VEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMGYH 101
VE Q + + +G +VTLPC Y T+ G+ I+W KL + + V ++ +
Sbjct: 24 VETPQDVLRASQGKSVTLPCT-YHTSTSSREGL----IQWDKLLLTHTERVVIWPFSNKN 78
Query: 102 KKTYGGYQGRVFLKGGSD-SDASLVITDLTLEDYGRYKCEV--IEGLEDDT 149
Y+ RV + ++ SDAS+ I LT+ D G Y+C V + LE +T
Sbjct: 79 YIHGELYKNRVSISNNAEQSDASITIDQLTMADNGTYECSVSLMSDLEGNT 129
>gi|40549451 lymphatic vessel endothelial hyaluronan receptor 1
[Homo sapiens]
Length = 322
Score = 42.7 bits (99), Expect = 5e-04
Identities = 30/112 (26%), Positives = 49/112 (43%), Gaps = 8/112 (7%)
Query: 146 EDDTVVVALDLQGVVFPYFPRLGRYNLNFHEAQQACLDQDAVIASFDQLYDAWRGGLDWC 205
E+ ++ V+ + G+ + LNF EA++AC +A DQ+ A + + C
Sbjct: 28 EELSIQVSCRIMGITL--VSKKANQQLNFTEAKEACRLLGLSLAGKDQVETALKASFETC 85
Query: 206 NAGWLSDGSVQYPITKPREPCGGQNTVPGVRNYGFWDKDKSR-YDVFCFTSN 256
+ GW+ DG V P CG GV W SR + +C+ S+
Sbjct: 86 SYGWVGDGFVVISRISPNPKCGKNGV--GVL---IWKVPVSRQFAAYCYNSS 132
Score = 36.2 bits (82), Expect = 0.046
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 3/84 (3%)
Query: 269 KLTYDEAVQACLNDGAQIAKVGQIFAAWKILGYDRCDAGWLADGSVRYPISRPRRRCSPT 328
+L + EA +AC G +A Q+ A K ++ C GW+ DG V P +C
Sbjct: 51 QLNFTEAKEACRLLGLSLAGKDQVETALKA-SFETCSYGWVGDGFVVISRISPNPKCGKN 109
Query: 329 EAAVRFVGFPDKKHKLYGVYCFRA 352
V P + + YC+ +
Sbjct: 110 GVGVLIWKVPVSRQ--FAAYCYNS 131
>gi|4503173 coxsackie virus and adenovirus receptor precursor [Homo
sapiens]
Length = 365
Score = 40.4 bits (93), Expect = 0.002
Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 40 LLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFVSMG 99
L + + + +G LPCKF P G + I+W +D K VD + +
Sbjct: 20 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGP----LDIEWLISPADNQK-VDQVIILY 74
Query: 100 YHKKTYGGY----QGRVFLKGGS--DSDASLVITDLTLEDYGRYKCEV 141
K Y Y +GRV DAS+ +T+L L D G Y+C+V
Sbjct: 75 SGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKV 122
>gi|154426280 V-set and immunoglobulin domain containing 4 isoform 2
[Homo sapiens]
Length = 305
Score = 39.3 bits (90), Expect = 0.005
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 55 GNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFV--SMGYHKKTYGGYQGRV 112
G+V LPC + DP G ++ +KW L V +F+ S G H + YQGR+
Sbjct: 35 GDVNLPCTY--DPL---QGYTQVLVKW--LVQRGSDPVTIFLRDSSGDHIQQ-AKYQGRL 86
Query: 113 FLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVV 152
+ D SL ++ L ++D Y CEV D VV
Sbjct: 87 HVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVV 126
>gi|6005958 V-set and immunoglobulin domain containing 4 isoform 1
[Homo sapiens]
Length = 399
Score = 39.3 bits (90), Expect = 0.005
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 10/100 (10%)
Query: 55 GNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFV--SMGYHKKTYGGYQGRV 112
G+V LPC + DP G ++ +KW L V +F+ S G H + YQGR+
Sbjct: 35 GDVNLPCTY--DPL---QGYTQVLVKW--LVQRGSDPVTIFLRDSSGDHIQQ-AKYQGRL 86
Query: 113 FLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVV 152
+ D SL ++ L ++D Y CEV D VV
Sbjct: 87 HVSHKVPGDVSLQLSTLEMDDRSHYTCEVTWQTPDGNQVV 126
>gi|11386199 poliovirus receptor-related 3 [Homo sapiens]
Length = 549
Score = 38.5 bits (88), Expect = 0.009
Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 12/106 (11%)
Query: 37 GPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKEVDVFV 96
GP ++VE V+ G NV+L C + T +I W K+ + V V
Sbjct: 58 GP-IIVEPHVTAVW---GKNVSLKCLIEVNETI-------TQISWEKIHGKSSQTVAVHH 106
Query: 97 SMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVI 142
Y G YQGRV K S +DA++ + ++ D G+Y C+ +
Sbjct: 107 PQ-YGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSGKYICKAV 151
>gi|61966777 V-set and immunoglobulin domain containing 8 [Homo
sapiens]
Length = 414
Score = 35.4 bits (80), Expect = 0.078
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 46 QAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYL-KEVDVFVSMGYHKKT 104
Q ++ G NV L C + DP +G + + I+W ++ SD +VF+S +
Sbjct: 29 QEVLYLAEGDNVRLGCPYVLDPEDYGP--NGLDIEWMQVNSDPAHHRENVFLSYQDKRIN 86
Query: 105 YGG---YQGRVFLKGGSDS--DASLVITDLTLEDYGRYKCEV 141
+G Q RV S DAS+ + +L + D Y+C V
Sbjct: 87 HGSLPHLQQRVRFAASDPSQYDASINLMNLQVSDTATYECRV 128
>gi|9055238 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 33.1 bits (74), Expect = 0.39
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 101 HKKTYGGYQGRVFLKGGSD-SDASLVITDLTLEDYGRYKCEVIEGLE 146
H++ +QGR+ G D D S+ + ++TL D G Y C V E
Sbjct: 81 HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFE 127
>gi|93587332 voltage-gated sodium channel beta-3 subunit precursor
[Homo sapiens]
Length = 215
Score = 33.1 bits (74), Expect = 0.39
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 101 HKKTYGGYQGRVFLKGGSD-SDASLVITDLTLEDYGRYKCEVIEGLE 146
H++ +QGR+ G D D S+ + ++TL D G Y C V E
Sbjct: 81 HQEVESPFQGRLQWNGSKDLQDVSITVLNVTLNDSGLYTCNVSREFE 127
>gi|148664224 adhesion molecule, interacts with CXADR antigen 1
isoform 2 [Homo sapiens]
Length = 384
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 78 RIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGS-DSDASLVITDLTLEDYGR 136
+I WT ++ K+ V G +Q RV L G +D SL++ D+ D G
Sbjct: 44 KIDWTLSPGEHAKDEYVLYYYSNLSVPIGRFQNRVHLMGDILCNDGSLLLQDVQEADQGT 103
Query: 137 YKCEV 141
Y CE+
Sbjct: 104 YICEI 108
>gi|148664207 adhesion molecule, interacts with CXADR antigen 1
isoform 1 [Homo sapiens]
Length = 394
Score = 32.7 bits (73), Expect = 0.51
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 78 RIKWTKLTSDYLKEVDVFVSMGYHKKTYGGYQGRVFLKGGS-DSDASLVITDLTLEDYGR 136
+I WT ++ K+ V G +Q RV L G +D SL++ D+ D G
Sbjct: 54 KIDWTLSPGEHAKDEYVLYYYSNLSVPIGRFQNRVHLMGDILCNDGSLLLQDVQEADQGT 113
Query: 137 YKCEV 141
Y CE+
Sbjct: 114 YICEI 118
>gi|63054855 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 32.3 bits (72), Expect = 0.66
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 108 YQGR-VFLKGGSDSDASLVITDLTLEDYGRYKCEVIEG--LEDDTVVV 152
Y+GR V ++ + +L I D+ LED G Y+C + G ++DTV++
Sbjct: 94 YKGRTVLVRDAQEGSVTLQILDVRLEDQGSYRCLIQVGNLSKEDTVIL 141
>gi|19923536 erythroblast membrane-associated protein precursor
[Homo sapiens]
Length = 475
Score = 32.3 bits (72), Expect = 0.66
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 108 YQGR-VFLKGGSDSDASLVITDLTLEDYGRYKCEVIEG--LEDDTVVV 152
Y+GR V ++ + +L I D+ LED G Y+C + G ++DTV++
Sbjct: 94 YKGRTVLVRDAQEGSVTLQILDVRLEDQGSYRCLIQVGNLSKEDTVIL 141
>gi|110349719 titin isoform N2-A [Homo sapiens]
Length = 33423
Score = 32.0 bits (71), Expect = 0.86
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 119 DSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGV--VFPYFPR 166
D A L + D+T D G Y+C+V+ +D+ L ++GV V+ Y+ R
Sbjct: 31621 DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVREVYDYYCR 31670
Score = 31.2 bits (69), Expect = 1.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 119 DSDASLVITDLTLEDYGRYKCEVIEGLEDDT 149
+S+A L ITD+ +ED G Y CE + + D+
Sbjct: 3790 NSEAILDITDVKVEDSGSYSCEAVNDVGSDS 3820
Score = 28.9 bits (63), Expect = 7.3
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 28/126 (22%)
Query: 32 IQAENGPHLLVEAEQAKVFSHRGGNVTLPCKFYRDPTAFGSGIHKIRIKWTKLTSDYLKE 91
+ + P + + E +KV + +G ++ L CK SG +I++ W + +
Sbjct: 6358 LSVKEPPKFVKKLEASKV-AKQGESIQLECKI--------SGSPEIKVSW------FRND 6402
Query: 92 VDVFVSMGYHKKTYGGYQGRVFLKGGSDSDASLVITDLTLEDYGRYKCEVIEGLEDDTVV 151
++ S Y+ +S A L I + + ED G Y CE G+ D +
Sbjct: 6403 SELHESWKYNMSFI-------------NSVALLTINEASAEDSGDYICEAHNGVGDASCS 6449
Query: 152 VALDLQ 157
AL ++
Sbjct: 6450 TALTVK 6455
>gi|110349717 titin isoform novex-2 [Homo sapiens]
Length = 27118
Score = 32.0 bits (71), Expect = 0.86
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 119 DSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGV--VFPYFPR 166
D A L + D+T D G Y+C+V+ +D+ L ++GV V+ Y+ R
Sbjct: 25316 DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVREVYDYYCR 25365
>gi|110349713 titin isoform novex-1 [Homo sapiens]
Length = 27051
Score = 32.0 bits (71), Expect = 0.86
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 119 DSDASLVITDLTLEDYGRYKCEVIEGLEDDTVVVALDLQGV--VFPYFPR 166
D A L + D+T D G Y+C+V+ +D+ L ++GV V+ Y+ R
Sbjct: 25249 DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVREVYDYYCR 25298
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.459
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,298,214
Number of Sequences: 37866
Number of extensions: 633011
Number of successful extensions: 1668
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 1399
Number of HSP's gapped (non-prelim): 231
length of query: 354
length of database: 18,247,518
effective HSP length: 103
effective length of query: 251
effective length of database: 14,347,320
effective search space: 3601177320
effective search space used: 3601177320
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.