Guide to the Human Genome
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Name: ARL5C Sequence: fasta or formatted (179aa) NCBI GI: 221219071
Description:

ADP-ribosylation factor-like 5C

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         11           3
 C cysteine            1.7          3           2
 D aspartate           5.0          9           1
 E glutamate           7.3         13           2
 F phenylalanine       4.5          8           2
 G glycine             3.9          7           1
 H histidine           3.9          7           1
 I isoleucine          9.5         17           2
 K lysine              3.9          7           1
 L leucine            10.6         19           2
 M methionine          4.5          8           1
 N asparagine          4.5          8           1
 P proline             2.2          4           1
 Q glutamine           3.9          7           1
 R arginine            4.5          8           1
 S serine              6.1         11           1
 T threonine           7.8         14           2
 V valine              5.6         10           2
 W tryptophan          2.2          4           1
 Y tyrosine            2.2          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor-like 5C 
ARL5B                 0.657   ADP-ribosylation factor-like 8 
ARL5A                 0.627   ADP-ribosylation factor-like 5A isoform 1 
ARL5A                 0.494   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 0.494   ADP-ribosylation factor-like 5A isoform 2 
ARF1                  0.370   ADP-ribosylation factor 1 
ARF1                  0.370   ADP-ribosylation factor 1 
ARF1                  0.370   ADP-ribosylation factor 1 
ARF1                  0.370   ADP-ribosylation factor 1 
ARF3                  0.364   ADP-ribosylation factor 3 
ARF6                  0.352   ADP-ribosylation factor 6 
ARF4                  0.337   ADP-ribosylation factor 4 
ARF5                  0.334   ADP-ribosylation factor 5 
ARL1                  0.328   ADP-ribosylation factor-like 1 
TRIM23                0.302   ADP-ribosylation factor domain protein 1 isoform alph...
ARL3                  0.293   ADP-ribosylation factor-like 3 
TRIM23                0.275   ADP-ribosylation factor domain protein 1 isoform bet...
ARL2                  0.272   ADP-ribosylation factor-like 2 
ARL11                 0.269   ADP-ribosylation factor-like 11 
TRIM23                0.246   ADP-ribosylation factor domain protein 1 isoform gam...
ARL4A                 0.246   ADP-ribosylation factor-like 4A 
ARL4A                 0.246   ADP-ribosylation factor-like 4A 
ARL4A                 0.246   ADP-ribosylation factor-like 4A 
ARL14                 0.243   ADP-ribosylation factor-like 14 
ARL6                  0.237   ADP-ribosylation factor-like 6 
ARL6                  0.237   ADP-ribosylation factor-like 6 
ARL4C                 0.234   ADP-ribosylation factor-like 4C 
ARFRP1                0.216   ADP-ribosylation factor related protein 1 isoform a [...
ARFRP1                0.192   ADP-ribosylation factor related protein 1 isoform b...
ARL4D                 0.192   ADP-ribosylation factor-like 4D 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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