Guide to the Human Genome
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Name: AQP12A Sequence: fasta or formatted (295aa) NCBI GI: 40538880
Description:

aquaporin 12A

Referenced in:

Aquaporins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.9         41           2
 C cysteine            2.4          7           1
 D aspartate           1.7          5           1
 E glutamate           3.7         11           1
 F phenylalanine       5.8         17           3
 G glycine             8.1         24           1
 H histidine           3.4         10           1
 I isoleucine          0.0          0           0
 K lysine              2.0          6           1
 L leucine            16.6         49           3
 M methionine          2.4          7           1
 N asparagine          1.7          5           1
 P proline             6.4         19           2
 Q glutamine           3.7         11           1
 R arginine            4.4         13           2
 S serine              7.8         23           2
 T threonine           6.1         18           1
 V valine              6.1         18           1
 W tryptophan          1.4          4           1
 Y tyrosine            2.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   aquaporin 12A 
AQP12B                0.975   aquaporin 12B 
AQP11                 0.137   aquaporin 11 
AQP6                  0.026   aquaporin 6 
AQP5                  0.023   aquaporin 5 
AQP8                  0.021   aquaporin 8 
AQP1                  0.018   aquaporin 1 
AQP2                  0.016   aquaporin 2 
AQP4                  0.014   aquaporin 4 isoform b 
AQP4                  0.014   aquaporin 4 isoform a 
ZNF395                0.014   zinc finger protein 395 
STXBP5                0.012   syntaxin binding protein 5 (tomosyn) isoform b [Hom...
MIP                   0.009   major intrinsic protein of lens fiber 
FTCD                  0.009   formiminotransferase cyclodeaminase 
FTCD                  0.009   formiminotransferase cyclodeaminase 
SLC9A2                0.009   solute carrier family 9 (sodium/hydrogen exchanger),...
CRYZ                  0.009   crystallin, zeta isoform a 
CRYZ                  0.009   crystallin, zeta isoform a 
CRYZ                  0.009   crystallin, zeta isoform c 
SLC9A4                0.007   solute carrier family 9 (sodium/hydrogen exchanger)...
KIR2DL4               0.005   killer cell immunoglobulin-like receptor, two domai...
KIR2DL4               0.005   killer cell immunoglobulin-like receptor, two domai...
KIR2DL4               0.005   killer cell immunoglobulin-like receptor, two domai...
STXBP5                0.005   syntaxin binding protein 5 (tomosyn) isoform a [Hom...
KIR2DS3               0.005   killer cell immunoglobulin-like receptor, two domains...
LOC100130600          0.005   PREDICTED: similar to hCG2014367 
LOC100130600          0.005   PREDICTED: similar to hCG2014367 
LOC100130600          0.005   PREDICTED: hypothetical protein LOC100130600 
LOC100130600          0.005   PREDICTED: similar to hCG2014367 
COL11A2               0.005   collagen, type XI, alpha 2 isoform 2 preproprotein ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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