Guide to the Human Genome
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Name: LOC100129193 Sequence: fasta or formatted (181aa) NCBI GI: 169179152
Description:

PREDICTED: similar to hCG1795014

Not currently referenced in the text

Other entries for this name:
alt mRNA {181aa} PREDICTED: similar to hCG1795014
alt mRNA {181aa} PREDICTED: similar to hCG1795014
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          8           2
 C cysteine            4.4          8           1
 D aspartate           7.7         14           1
 E glutamate           9.4         17           3
 F phenylalanine       3.9          7           1
 G glycine             5.0          9           1
 H histidine           1.1          2           1
 I isoleucine          6.1         11           1
 K lysine              6.6         12           1
 L leucine            12.2         22           4
 M methionine          2.2          4           2
 N asparagine          8.3         15           2
 P proline             1.1          2           1
 Q glutamine           1.7          3           1
 R arginine            3.3          6           1
 S serine              6.1         11           2
 T threonine           5.5         10           1
 V valine              5.5         10           1
 W tryptophan          0.6          1           1
 Y tyrosine            5.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1795014 
LOC100129193          1.000   PREDICTED: similar to hCG1795014 
LOC100129193          1.000   PREDICTED: similar to hCG1795014 
LCN9                  0.297   lipocalin 9 
PTGDS                 0.124   prostaglandin H2 D-isomerase 
LCN15                 0.098   lipocalin 15 
LCN2                  0.084   lipocalin 2 
AMBP                  0.084   alpha-1-microglobulin/bikunin preproprotein 
PAEP                  0.075   glycodelin precursor 
PAEP                  0.075   glycodelin precursor 
OBP2B                 0.061   odorant binding protein 2B 
OBP2A                 0.061   odorant binding protein 2A precursor 
C8G                   0.058   complement component 8, gamma polypeptide 
LCN1                  0.049   lipocalin 1 precursor 
RBP4                  0.023   retinol-binding protein 4, plasma precursor 
APOD                  0.020   apolipoprotein D precursor 
LCN10                 0.020   lipocalin 10 
LCN8                  0.017   lipocalin 8 
SNAP91                0.014   synaptosomal-associated protein, 91kDa homolog 
SLC27A6               0.014   solute carrier family 27 (fatty acid transporter), m...
SLC27A6               0.014   solute carrier family 27 (fatty acid transporter), m...
ARHGEF4               0.009   Rho guanine nucleotide exchange factor 4 isoform a [...
ARHGEF4               0.009   Rho guanine nucleotide exchange factor 4 isoform b [...
ALG5                  0.009   dolichyl-phosphate beta-glucosyltransferase isoform 1...
VWDE                  0.006   von Willebrand factor D and EGF domains 
KIAA1324L             0.006   hypothetical protein LOC222223 isoform 2 
KIAA1324L             0.006   hypothetical protein LOC222223 isoform 1 
APAF1                 0.006   apoptotic peptidase activating factor 1 isoform e [H...
APAF1                 0.006   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.006   apoptotic peptidase activating factor 1 isoform c [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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