Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 4502015
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502015 A-kinase anchor protein 1 precursor [Homo sapiens]
(903 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4502015 A-kinase anchor protein 1 precursor [Homo sapiens] 1800 0.0
gi|145312259 tudor and KH domain containing isoform a [Homo sapi... 64 6e-10
gi|145312246 tudor and KH domain containing isoform b [Homo sapi... 64 6e-10
gi|145312270 tudor and KH domain containing isoform a [Homo sapi... 64 6e-10
gi|145312256 tudor and KH domain containing isoform a [Homo sapi... 64 6e-10
gi|94421471 ring finger protein 17 [Homo sapiens] 61 4e-09
gi|112293287 tudor domain containing 7 [Homo sapiens] 61 4e-09
gi|38505161 tudor domain containing 1 [Homo sapiens] 57 6e-08
gi|166851804 tudor domain containing 9 [Homo sapiens] 56 2e-07
gi|56549694 enabled homolog isoform a [Homo sapiens] 53 1e-06
gi|39930375 enabled homolog isoform b [Homo sapiens] 53 1e-06
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens] 48 4e-05
gi|239754438 PREDICTED: hypothetical protein [Homo sapiens] 47 6e-05
gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo ... 47 6e-05
gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo ... 47 1e-04
gi|40255178 tudor domain containing 5 [Homo sapiens] 46 2e-04
gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens] 45 3e-04
gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f... 44 9e-04
gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e... 44 9e-04
gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d... 44 9e-04
gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b ... 44 9e-04
gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a ... 44 9e-04
gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c ... 44 9e-04
gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens] 43 0.001
gi|210032580 SET domain containing 1B [Homo sapiens] 43 0.001
gi|169163653 PREDICTED: similar to tudor domain containing 1 [Ho... 43 0.002
gi|169164192 PREDICTED: similar to tudor domain containing 1 [Ho... 43 0.002
gi|169163210 PREDICTED: similar to tudor domain containing 1 [Ho... 43 0.002
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 42 0.003
gi|38261962 activating transcription factor 7 interacting protei... 41 0.004
>gi|4502015 A-kinase anchor protein 1 precursor [Homo sapiens]
Length = 903
Score = 1800 bits (4663), Expect = 0.0
Identities = 903/903 (100%), Positives = 903/903 (100%)
Query: 1 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV 60
MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV
Sbjct: 1 MAIQFRSLFPLALPGMLALLGWWWFFSRKKGHVSSHDEQQVEAGAVQLRADPAIKEPLPV 60
Query: 61 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR 120
EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR
Sbjct: 61 EDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPALLQTHPPCRRSESSGILPNTTDMRLR 120
Query: 121 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP 180
PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP
Sbjct: 121 PGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQP 180
Query: 181 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE 240
GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE
Sbjct: 181 GYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLE 240
Query: 241 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV 300
GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV
Sbjct: 241 GEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGV 300
Query: 301 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT 360
EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT
Sbjct: 301 EGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVISEAT 360
Query: 361 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP 420
EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP
Sbjct: 361 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP 420
Query: 421 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI 480
LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI
Sbjct: 421 LPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGI 480
Query: 481 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST 540
LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST
Sbjct: 481 LVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLPEST 540
Query: 541 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS 600
VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS
Sbjct: 541 VPFSNGVLKGELSDLGAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLKKTESFQNAQAGS 600
Query: 601 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS 660
NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS
Sbjct: 601 NPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYISTLPYTQSVQICHIEGS 660
Query: 661 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA 720
QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA
Sbjct: 661 QHHVDKALNLIGKKFKELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEVIVVNQVNA 720
Query: 721 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV 780
GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV
Sbjct: 721 GHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVV 780
Query: 781 ASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP 840
ASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP
Sbjct: 781 ASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSP 840
Query: 841 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY 900
EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY
Sbjct: 841 EADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVLINRSLVERGLAQWVDSYY 900
Query: 901 TSL 903
TSL
Sbjct: 901 TSL 903
>gi|145312259 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 63.9 bits (154), Expect = 6e-10
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 758 PVEITV----ICAAP-GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRS 812
P ++TV I AAP +G+W+RA+V+ + E N +++ +VD+G + LR +RS
Sbjct: 349 PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGN-LDLYFVDFGDNGDCPLKDLRALRS 407
Query: 813 DFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNT---ALLAQVTSYSPTGL-- 867
DF++LPFQ E L + P DQ+ EA +T L+A+++SY TG+
Sbjct: 408 DFLSLPFQAIECSLARIAP--SGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 465
Query: 868 -PLIQLWSVVGDEVVLINRSLVERGLA 893
P I L+ + + I LV +G A
Sbjct: 466 WPKIYLYDTSNGKKLDIGLELVHKGYA 492
Score = 34.3 bits (77), Expect = 0.54
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI-----STLPYTQSVQICHIEGSQHHVD 665
++ VP+ VGR+IG+ G + + + SGAKI TL ++ ++ I G+Q V
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIK---ISGTQKEVA 184
Query: 666 KALNLIGKKFKE 677
A +LI +K E
Sbjct: 185 AAKHLILEKVSE 196
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYIST---------LPYTQSVQICHIEGSQ 661
E+ VP+ V +IG+QG + L++ +GA+I + T L VQ+C + +
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
Query: 662 HHV 664
H +
Sbjct: 116 HQI 118
>gi|145312246 tudor and KH domain containing isoform b [Homo
sapiens]
Length = 516
Score = 63.9 bits (154), Expect = 6e-10
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 758 PVEITV----ICAAP-GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRS 812
P ++TV I AAP +G+W+RA+V+ + E N +++ +VD+G + LR +RS
Sbjct: 304 PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGN-LDLYFVDFGDNGDCPLKDLRALRS 362
Query: 813 DFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNT---ALLAQVTSYSPTGL-- 867
DF++LPFQ E L + P DQ+ EA +T L+A+++SY TG+
Sbjct: 363 DFLSLPFQAIECSLARIAP--SGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 420
Query: 868 -PLIQLWSVVGDEVVLINRSLVERGLA 893
P I L+ + + I LV +G A
Sbjct: 421 WPKIYLYDTSNGKKLDIGLELVHKGYA 447
Score = 30.4 bits (67), Expect = 7.8
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYIST 645
E+ VP+ V +IG+QG + L++ +GA+I + T
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDT 90
>gi|145312270 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 63.9 bits (154), Expect = 6e-10
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 758 PVEITV----ICAAP-GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRS 812
P ++TV I AAP +G+W+RA+V+ + E N +++ +VD+G + LR +RS
Sbjct: 349 PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGN-LDLYFVDFGDNGDCPLKDLRALRS 407
Query: 813 DFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNT---ALLAQVTSYSPTGL-- 867
DF++LPFQ E L + P DQ+ EA +T L+A+++SY TG+
Sbjct: 408 DFLSLPFQAIECSLARIAP--SGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 465
Query: 868 -PLIQLWSVVGDEVVLINRSLVERGLA 893
P I L+ + + I LV +G A
Sbjct: 466 WPKIYLYDTSNGKKLDIGLELVHKGYA 492
Score = 34.3 bits (77), Expect = 0.54
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI-----STLPYTQSVQICHIEGSQHHVD 665
++ VP+ VGR+IG+ G + + + SGAKI TL ++ ++ I G+Q V
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIK---ISGTQKEVA 184
Query: 666 KALNLIGKKFKE 677
A +LI +K E
Sbjct: 185 AAKHLILEKVSE 196
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYIST---------LPYTQSVQICHIEGSQ 661
E+ VP+ V +IG+QG + L++ +GA+I + T L VQ+C + +
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
Query: 662 HHV 664
H +
Sbjct: 116 HQI 118
>gi|145312256 tudor and KH domain containing isoform a [Homo
sapiens]
Length = 561
Score = 63.9 bits (154), Expect = 6e-10
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 14/147 (9%)
Query: 758 PVEITV----ICAAP-GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRS 812
P ++TV I AAP +G+W+RA+V+ + E N +++ +VD+G + LR +RS
Sbjct: 349 PEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGN-LDLYFVDFGDNGDCPLKDLRALRS 407
Query: 813 DFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNT---ALLAQVTSYSPTGL-- 867
DF++LPFQ E L + P DQ+ EA +T L+A+++SY TG+
Sbjct: 408 DFLSLPFQAIECSLARIAP--SGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST 465
Query: 868 -PLIQLWSVVGDEVVLINRSLVERGLA 893
P I L+ + + I LV +G A
Sbjct: 466 WPKIYLYDTSNGKKLDIGLELVHKGYA 492
Score = 34.3 bits (77), Expect = 0.54
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 8/72 (11%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYI-----STLPYTQSVQICHIEGSQHHVD 665
++ VP+ VGR+IG+ G + + + SGAKI TL ++ ++ I G+Q V
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIK---ISGTQKEVA 184
Query: 666 KALNLIGKKFKE 677
A +LI +K E
Sbjct: 185 AAKHLILEKVSE 196
Score = 31.2 bits (69), Expect = 4.5
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 611 EIEVPKHLVGRLIGKQGRYVSFLKQTSGAKIYIST---------LPYTQSVQICHIEGSQ 661
E+ VP+ V +IG+QG + L++ +GA+I + T L VQ+C + +
Sbjct: 56 EMRVPQEAVKLIIGRQGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQVCKAKAAI 115
Query: 662 HHV 664
H +
Sbjct: 116 HQI 118
>gi|94421471 ring finger protein 17 [Homo sapiens]
Length = 1623
Score = 61.2 bits (147), Expect = 4e-09
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 4/138 (2%)
Query: 765 CAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEV 824
C A DG W+RA+V+ EVE++YVD+G ++ + +R+I+ +F+ P + +
Sbjct: 733 CVAKFEDGIWYRAKVIG-LPGHQEVEVKYVDFGNTAKITIKDVRKIKDEFLNAPEKAIKC 791
Query: 825 LLDSVMPLSDDDQFSPEADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGD---EVV 881
L + P Q+S EA E + + V + L++L+ +G
Sbjct: 792 KLAYIEPYKRTMQWSKEAKEKFEEKAQDKFMTCSVIKILEDNVLLVELFDSLGAPEMTTT 851
Query: 882 LINRSLVERGLAQWVDSY 899
IN LV+ GLA + Y
Sbjct: 852 SINDQLVKEGLASYEIGY 869
Score = 46.2 bits (108), Expect = 1e-04
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 15/139 (10%)
Query: 765 CAAPGADGAWWRAQVVASYE-ETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAE 823
C A DG W+RA++VA E + +++VDYG ++ ++ L QI S + P + +
Sbjct: 1486 CLAEYDDGLWYRAKIVAIKEFNPLSILVQFVDYGSTAKLTLNRLCQIPSHLMRYPARAIK 1545
Query: 824 VLLDSVMPLSDD---------DQFSPEADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWS 874
VLL P D ++S EA AM + L A + +P Q+ +
Sbjct: 1546 VLLAGFKPPLRDLGETRIPYCPKWSMEALWAMIDCLQGKQLYAVSMAPAPE-----QIVT 1600
Query: 875 VVGDEVVLINRSLVERGLA 893
+ DE ++ LVE GLA
Sbjct: 1601 LYDDEQHPVHMPLVEMGLA 1619
Score = 38.9 bits (89), Expect = 0.022
Identities = 49/188 (26%), Positives = 82/188 (43%), Gaps = 11/188 (5%)
Query: 712 VIVVNQVNAGHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGAD 771
V + N ++ ++VQ T + L SL+++M Y P E + CA D
Sbjct: 920 VHICNVISPEKIYVQWLL--TENLLNSLEEKMIAAYENSKWE--PVKWENDMHCAVKIQD 975
Query: 772 -GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVM 830
W R Q++ +T VE+ D G V VD LR++ + T+ E L +
Sbjct: 976 KNQWRRGQIIRMVTDTL-VEVLLYDVGVELVVNVDCLRKLEENLKTMGRLSLECSLVDIR 1034
Query: 831 PLSDDDQFSPEA-DAAMSEMTGNTA-LLAQVTS---YSPTGLPLIQLWSVVGDEVVLINR 885
P D+++ A D +TG A ++ QV S + LP+ E V +++
Sbjct: 1035 PAGGSDKWTATACDCLSLYLTGAVATIILQVDSEENNTTWPLPVKIFCRDEKGERVDVSK 1094
Query: 886 SLVERGLA 893
L+++GLA
Sbjct: 1095 YLIKKGLA 1102
>gi|112293287 tudor domain containing 7 [Homo sapiens]
Length = 1098
Score = 61.2 bits (147), Expect = 4e-09
Identities = 50/208 (24%), Positives = 96/208 (46%), Gaps = 14/208 (6%)
Query: 702 LMLPDGITVEVIVVNQVNAGHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEI 761
LM+P + V+VV N + ++ A ++ +M YS+ T V +
Sbjct: 457 LMIPTEASPSVLVVELSNTNEVVIRYVGKDYSAAQELMEDEMKEYYSKNPKITPVQAVNV 516
Query: 762 TVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQG 821
+ A + AW RAQV+++ E N++++ YVDYG + V+ ++ F +L FQ
Sbjct: 517 GQLLAVNAEEDAWLRAQVIST--EENKIKVCYVDYGFSENVEKSKAYKLNPKFCSLSFQA 574
Query: 822 AEVLLDSVMPLSDDDQFSPEADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVV 881
+ L + LSDD P+ + +T ++ +PL+ L+ G++ +
Sbjct: 575 TKCKLAGLEVLSDD----PDLVKVVESLTCGKIFAVEI--LDKADIPLVVLYDTSGEDDI 628
Query: 882 LIN----RSLVERGLA--QWVDSYYTSL 903
IN +++ ++ L VD+ YT++
Sbjct: 629 NINATCLKAICDKSLEVHLQVDAMYTNV 656
>gi|38505161 tudor domain containing 1 [Homo sapiens]
Length = 1189
Score = 57.4 bits (137), Expect = 6e-08
Identities = 46/171 (26%), Positives = 71/171 (41%), Gaps = 10/171 (5%)
Query: 700 SWLMLPDGITVEVIVVNQVNAGHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPV 759
+W+ L TV+V+V + G + L L++ + Q LP
Sbjct: 706 TWVELGVDQTVDVVVCVIYSPGEFYCHVLKEDALKKLNDLNKSLAEHCQQK----LPNGF 761
Query: 760 EITV---ICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVT 816
+ + CA DG+W+RA +V V++ +VDYG + V D LR I S F+
Sbjct: 762 KAEIGQPCCAFFAGDGSWYRA-LVKEILPNGHVKVHFVDYGNIEEVTADELRMISSTFLN 820
Query: 817 LPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMTGNTALLAQVTSYSPTGL 867
LPFQG L + S + +S EA L A+V + G+
Sbjct: 821 LPFQGIRCQLADIQ--SRNKHWSEEAITRFQMCVAGIKLQARVVEVTENGI 869
Score = 45.4 bits (106), Expect = 2e-04
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 763 VICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGA 822
+ CA D W+RA V+A Y V + YVDYG ++ + + L I + LP Q
Sbjct: 547 ICCAQFSEDDQWYRASVLA-YASEESVLVGYVDYGNFEILSLMRLCPIIPKLLELPMQAI 605
Query: 823 EVLLDSVMPLSDDDQFSPEADAAMSEMTGNTALLAQVTSYSPTGLPLIQLWSVVGDEVVL 882
+ +L V P ++PEA M ++ N + +V L++L V
Sbjct: 606 KCVLAGVKP--SLGIWTPEAICLMKKLVQNKIITVKVVDKLENS-SLVELIDKSETPHVS 662
Query: 883 INRSLVERGLAQWVDSYYT 901
+++ L++ G A S T
Sbjct: 663 VSKVLLDAGFAVGEQSMVT 681
Score = 40.8 bits (94), Expect = 0.006
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 765 CAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEV 824
CA +D W+RA V+ + + +VE+ Y DYG + + + ++ I S + LPFQ
Sbjct: 998 CAKYTSDDFWYRAVVLGTSD--TDVEVLYADYGNIETLPLCRVQPITSSHLALPFQIIRC 1055
Query: 825 LLDSVMPLS 833
L+ +M L+
Sbjct: 1056 SLEGLMELN 1064
>gi|166851804 tudor domain containing 9 [Homo sapiens]
Length = 1382
Score = 55.8 bits (133), Expect = 2e-07
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 17/203 (8%)
Query: 708 ITVEVIVVNQVNAGHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITVICAA 767
+T++V V V GH + + L+ L ++ +Q + LPT ++C A
Sbjct: 900 LTIDVTEV--VEVGHFWGYRIDENNSEILKKLTAEI----NQLTLVPLPTHPHPDLVCLA 953
Query: 768 PGAD---GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEV 824
P AD ++RAQV+ Y N E+ +VDYG V + +L +I F+ LPFQ E
Sbjct: 954 PFADFDKQRYFRAQVL--YVSGNSAEVFFVDYGNKSHVDLHLLMEIPCQFLELPFQALEF 1011
Query: 825 LLDSVMP----LSDDDQFSPEADAAMSEMTGNTALLAQVTSYSPTGLPL-IQLWSVVGDE 879
+ + P L +S A + + LL +V S + L + + +S V D
Sbjct: 1012 KICKMRPSAKSLVCGKHWSDGASQWFASLVSGCTLLVKVFSVVHSVLHVDVYQYSGVQD- 1070
Query: 880 VVLINRSLVERGLAQWVDSYYTS 902
+ I L+++G A+ + Y S
Sbjct: 1071 AINIRDVLIQQGYAELTEESYES 1093
>gi|56549694 enabled homolog isoform a [Homo sapiens]
Length = 591
Score = 53.1 bits (126), Expect = 1e-06
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 36/276 (13%)
Query: 224 HVLELENSK--GPSL----ASLEGEEDKGKSSSS------QVVGPVQEEEYVAEKLPSRF 271
H LE+ NS+ GP+L + L + G S Q+ +++E E+L
Sbjct: 106 HALEVLNSQETGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERER 165
Query: 272 IESAHTELAK------DDAAPAPPVADAKAQDRGVEGELGNEESLDRNE-----EGLDRN 320
+E E + + + + Q+R + L +E L+R E E LDR
Sbjct: 166 MERERLERERLERERLERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRE 225
Query: 321 EEGLDRNE--ESLDRNEEGLDRNEEIKRAAFQIISQ--VISEATEQVLATTVGKVAGRVC 376
+ E E L+R + +R E+++R + + + S A + T + V G
Sbjct: 226 RQERQERERLERLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSS 285
Query: 377 QASQ-LQGQKEESCVPVHQKTVLGPDTAEP--------ATAEAAVAPPDAGLPLPGLPAE 427
+ LQ + + P Q VLGP P A A A+ PP P P LP+
Sbjct: 286 ASEPGLQAASQPAETPSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPST 345
Query: 428 GSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLAS 463
G PPP + P P + A LAS
Sbjct: 346 GPPPPPPPPPLPNQVPPPPPPPPAPPLPASGFFLAS 381
>gi|39930375 enabled homolog isoform b [Homo sapiens]
Length = 570
Score = 53.1 bits (126), Expect = 1e-06
Identities = 68/276 (24%), Positives = 106/276 (38%), Gaps = 36/276 (13%)
Query: 224 HVLELENSK--GPSL----ASLEGEEDKGKSSSS------QVVGPVQEEEYVAEKLPSRF 271
H LE+ NS+ GP+L + L + G S Q+ +++E E+L
Sbjct: 106 HALEVLNSQETGPTLPRQNSQLPAQVQNGPSQEELEIQRRQLQEQQRQKELERERLERER 165
Query: 272 IESAHTELAK------DDAAPAPPVADAKAQDRGVEGELGNEESLDRNE-----EGLDRN 320
+E E + + + + Q+R + L +E L+R E E LDR
Sbjct: 166 MERERLERERLERERLERERLEQEQLERERQERERQERLERQERLERQERLERQERLDRE 225
Query: 321 EEGLDRNE--ESLDRNEEGLDRNEEIKRAAFQIISQ--VISEATEQVLATTVGKVAGRVC 376
+ E E L+R + +R E+++R + + + S A + T + V G
Sbjct: 226 RQERQERERLERLERERQERERQEQLEREQLEWERERRISSAAAPASVETPLNSVLGDSS 285
Query: 377 QASQ-LQGQKEESCVPVHQKTVLGPDTAEP--------ATAEAAVAPPDAGLPLPGLPAE 427
+ LQ + + P Q VLGP P A A A+ PP P P LP+
Sbjct: 286 ASEPGLQAASQPAETPSQQGIVLGPLAPPPPPPLPPGPAQASVALPPPPGPPPPPPLPST 345
Query: 428 GSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLAS 463
G PPP + P P + A LAS
Sbjct: 346 GPPPPPPPPPLPNQVPPPPPPPPAPPLPASGFFLAS 381
>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
Length = 2400
Score = 48.1 bits (113), Expect = 4e-05
Identities = 66/291 (22%), Positives = 110/291 (37%), Gaps = 33/291 (11%)
Query: 159 SKSAEVCKQDSPFSRVPRKVQPGYPVVPAEKRSSGERARE--------TGGAEGTGDAVL 210
S+ E + + + QP V A+ +S GE A+E G A+ D V
Sbjct: 1997 SEDVEAPEAEGEMQEAEEEAQPESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVE 2056
Query: 211 GEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVAEKLPSR 270
+ EEA + V E E P ++ +E +G++ E E A+K +
Sbjct: 2057 APEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQK--AE 2114
Query: 271 FIESAHTE---LAKDDAAPAPPV-ADAKAQDRGVEGELGNEESLDRNEEGLDRNE----- 321
IE+ TE + + AP +A+ + GVE + E+ EG++ E
Sbjct: 2115 GIEAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEA-QPESEGIEAQEAEEEA 2173
Query: 322 ----EGLD--RNEESLDRNEEGLDRNEEIKRAAFQIISQVISEATEQVLATTVG----KV 371
EG++ E EG++ E A ++ EA E+ G +
Sbjct: 2174 QPELEGVEAPEAEGEAQPESEGIEAPEAEGEAQPELEGVEAPEAEEEAQPEPEGVETPEA 2233
Query: 372 AGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLPLP 422
G S+ + Q E+ P + LG +E A+ ++ P D P P
Sbjct: 2234 EGEAQPESEGETQGEKKGSP---QVSLGDGQSEEASESSSPVPEDRPTPPP 2281
Score = 41.2 bits (95), Expect = 0.004
Identities = 83/402 (20%), Positives = 139/402 (34%), Gaps = 26/402 (6%)
Query: 187 AEKRSSGERARETGG-AEGTGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDK 245
AE + + E A+E G + + + ++ EEA E V LE A E + +
Sbjct: 1938 AEAQEAEEAAQEAEGQTQPESEVIESQEAEEEAQPESEDVEALEVEVETQEAEGEAQPES 1997
Query: 246 GKSSSSQVVGPVQEEEYVAEKLPSRFIE----SAHTELAKDDAAPAPPVADAKAQDRGVE 301
+ + G +QE E A+ S +E S E + + DA+ + GVE
Sbjct: 1998 EDVEAPEAEGEMQEAEEEAQP-ESDGVEAQPKSEGEEAQEVEGETQKTEGDAQPESDGVE 2056
Query: 302 GELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVI-SEAT 360
EE+ + E + E +E+ + EG + E A + + +E
Sbjct: 2057 APEAEEEAQEAEGEVQEAEGEAHPESEDVDAQEAEGEAQPESEGVEAPEAEGEAQKAEGI 2116
Query: 361 EQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGLP 420
E + +A + +G+ + V + G E EA A +A
Sbjct: 2117 EAPETEGEAQPESEGIEAPEAEGEAQPESEGVEAQDAEGEAQPESEGIEAQEAEEEAQPE 2176
Query: 421 LPGLPA---EGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDR 477
L G+ A EG P++ + +P + + + A E P+
Sbjct: 2177 LEGVEAPEAEGEAQPES------EGIEAPEAEGEAQPELEGVE-----APEAEEEAQPEP 2225
Query: 478 AGILVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETSSSPRDKAITPPLP 537
G+ +A S+ G S E++ +S P D+ PP P
Sbjct: 2226 EGVETPEAEGEA--QPESEGETQGEKKGSPQVSLGDGQSEEASESSSPVPEDRPTPPPSP 2283
Query: 538 ESTVPFSN-GVLKGELSDLGAEDG--WTMDAEADHSGGSDRN 576
P G G S + G W D+E DH G R+
Sbjct: 2284 GGDTPHQRPGSQTGPSSSRASSWGNCWQKDSENDHVLGDTRS 2325
>gi|239754438 PREDICTED: hypothetical protein [Homo sapiens]
Length = 709
Score = 47.4 bits (111), Expect = 6e-05
Identities = 66/237 (27%), Positives = 93/237 (39%), Gaps = 47/237 (19%)
Query: 375 VCQASQLQGQKEESCVPVHQ--KTVLGPDTAEPATAEAAVAP------PDAGLPLPGLPA 426
VC A G +S P+ + + GP EP++A AP P AG G P
Sbjct: 274 VCAAPSAGGSPGKSDAPLRGWLRALRGP--REPSSAHTLGAPLGASPSPPAGRSWVGDP- 330
Query: 427 EGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGILVEDAT 486
G+P SC +P + S P + A +S SCL EE P E+ +
Sbjct: 331 -GAPLTPRKASCS---WPAPGEASSPGLRAG-VSAFSCL------EEFPG------EECS 373
Query: 487 CVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETS---------SSPRDKAITPPLP 537
C+ + S + P + + +SFS CT T+ SS A PPL
Sbjct: 374 CLAVVVASGKGSPSASRGSNWGESFSWH----CCTATAAALLLQRGDSSASGGAAGPPLS 429
Query: 538 ESTVPFSNGVLKGELSDL------GAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLK 588
S+ S G +GE S L G ED A S + R+ + S S C++K
Sbjct: 430 GSSPSASRGFSRGEPSSLVSVCFRGKEDEEKKPVLAAFSSRTVRSHLGSTSSTCNMK 486
>gi|239748928 PREDICTED: hypothetical protein XP_002346859 [Homo
sapiens]
Length = 709
Score = 47.4 bits (111), Expect = 6e-05
Identities = 66/237 (27%), Positives = 93/237 (39%), Gaps = 47/237 (19%)
Query: 375 VCQASQLQGQKEESCVPVHQ--KTVLGPDTAEPATAEAAVAP------PDAGLPLPGLPA 426
VC A G +S P+ + + GP EP++A AP P AG G P
Sbjct: 274 VCAAPSAGGSPGKSDAPLRGWLRALRGP--REPSSAHTLGAPLGASPSPPAGRSWVGDP- 330
Query: 427 EGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGILVEDAT 486
G+P SC +P + S P + A +S SCL EE P E+ +
Sbjct: 331 -GAPLTPRKASCS---WPAPGEASSPGLRAG-VSAFSCL------EEFPG------EECS 373
Query: 487 CVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETS---------SSPRDKAITPPLP 537
C+ + S + P + + +SFS CT T+ SS A PPL
Sbjct: 374 CLAVVVASGKGSPSASRGSNWGESFSWH----CCTATAAALLLQRGDSSASGGAAGPPLS 429
Query: 538 ESTVPFSNGVLKGELSDL------GAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLK 588
S+ S G +GE S L G ED A S + R+ + S S C++K
Sbjct: 430 GSSPSASRGFSRGEPSSLVSVCFRGKEDEEKKPVLAAFSSRTVRSHLGSTSSTCNMK 486
>gi|239742950 PREDICTED: hypothetical protein XP_002342702 [Homo
sapiens]
Length = 709
Score = 46.6 bits (109), Expect = 1e-04
Identities = 66/237 (27%), Positives = 93/237 (39%), Gaps = 47/237 (19%)
Query: 375 VCQASQLQGQKEESCVPVHQ--KTVLGPDTAEPATAEAAVAP------PDAGLPLPGLPA 426
VC A G +S P+ + + GP EP++A AP P AG G P
Sbjct: 274 VCAAPSAGGSPGKSDAPLGGWLRALRGP--REPSSAHTLGAPLGASPSPPAGRSWVGDP- 330
Query: 427 EGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGILVEDAT 486
G+P SC +P + S P + A +S SCL EE P E+ +
Sbjct: 331 -GAPLTPRKASCS---WPAPGEASSPGLRAG-VSAFSCL------EEFPG------EECS 373
Query: 487 CVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTETS---------SSPRDKAITPPLP 537
C+ + S + P + + +SFS CT T+ SS A PPL
Sbjct: 374 CLAVVVASGKGSPSASRGSNWGESFSWH----CCTATAAALLLQRGDSSASGGAAGPPLS 429
Query: 538 ESTVPFSNGVLKGELSDL------GAEDGWTMDAEADHSGGSDRNSMDSVDSCCSLK 588
S+ S G +GE S L G ED A S + R+ + S S C++K
Sbjct: 430 GSSPSASRGFSRGEPSSLVSVCFRGKEDEEKKPVLAAFSSRTVRSHLGSTSSTCNMK 486
>gi|40255178 tudor domain containing 5 [Homo sapiens]
Length = 981
Score = 45.8 bits (107), Expect = 2e-04
Identities = 45/214 (21%), Positives = 86/214 (40%), Gaps = 15/214 (7%)
Query: 661 QHHVDKALNLIGKKFK--------ELNLTNIYAPPLPSLALPSLPMTSWLMLPDGITVEV 712
Q + K NL+ K + ELNL + +P A+P+ + L + V
Sbjct: 417 QQKICKKPNLVVKPLQLQVETNKSELNLA-MANHDIPPDAVPNKKLCRLPPLDTSSLIGV 475
Query: 713 IVVNQVNAGHLFVQQHTHPTFHALRSLDQQMYLCYSQPGIPTLPTPVEITV----ICAAP 768
V ++ +++ ++ + L + +M CYS + E + +C
Sbjct: 476 FVEYIISPSQFYIRIYSRDSSELLEDMMIEMRRCYSNQLVSDRYVMPECFIQPGHLCCVR 535
Query: 769 GADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDS 828
++ WW ++ E EVE+ Y D+G V+ LR ++ + LP Q L
Sbjct: 536 ISEDKWWYRVIIHRVLEKQEVEVFYPDFGNIGIVQKSSLRFLKCCYTKLPAQAIPCSLAW 595
Query: 829 VMPLSDDDQFSPEADAAMSEMTGNTALLAQVTSY 862
V P+ ++ ++ +A ++ G L+ V Y
Sbjct: 596 VRPV--EEHWTSKAILQFQKLCGLKPLVGVVDEY 627
>gi|14249452 zinc finger CCCH-type containing 10 [Homo sapiens]
Length = 434
Score = 45.1 bits (105), Expect = 3e-04
Identities = 67/271 (24%), Positives = 100/271 (36%), Gaps = 35/271 (12%)
Query: 246 GKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVAD-------AKAQDR 298
G S+ V+ + + Y LP R E + PP + A R
Sbjct: 174 GGGSTGSVLPGRRHDLYDIYDLPDRGFEDHEPGPKRRRGGCCPPDGPHFESYEYSLAPPR 233
Query: 299 GVEGELGNEES--LDRNEEGLDRNEEGLDRNEESLDRNEEGLDRNEEIKRAAFQIISQVI 356
GVE L EE+ L + E L + L L NE L++N + + A I
Sbjct: 234 GVECRLLEEENAMLRKRVEELKKQVSNL------LATNEVLLEQNAQFRNQAKVITLSST 287
Query: 357 SEATEQVLATTVGKVA---GRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVA 413
+ ATEQ LA TVG VA + Q + PV Q+ ++ P A A A
Sbjct: 288 APATEQTLAPTVGTVATFNHGIAQTHTTLSSQALQPRPVSQQELVAP-------AGAPAA 340
Query: 414 PPDAGLPLPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEE 473
PP P PA PPP + L ++ + ++ +S+A P
Sbjct: 341 PPTNAAP----PAAPPPPPPHLTPEITPLSAALAQTIAQGMAPPPVSMAPVAVSVAPV-- 394
Query: 474 LPDRAGILVEDATCVTCMSDSSQSVPLVASP 504
A + V A + ++ S + P+V P
Sbjct: 395 ----APVAVSMAQPLAGITMSHTTTPMVTYP 421
>gi|207113164 Treacher Collins-Franceschetti syndrome 1 isoform f
[Homo sapiens]
Length = 1412
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 540 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 597
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 598 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 642
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 643 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 695
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 696 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 749
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 750 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 803
>gi|207113162 Treacher Collins-Franceschetti syndrome 1 isoform e
[Homo sapiens]
Length = 1451
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 617 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 674
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 675 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 719
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 720 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 772
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 773 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 826
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 827 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 880
>gi|207113160 Treacher Collins-Franceschetti syndrome 1 isoform d
[Homo sapiens]
Length = 1488
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 617 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 674
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 675 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 719
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 720 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 772
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 773 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 826
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 827 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 880
>gi|57164975 Treacher Collins-Franceschetti syndrome 1 isoform b
[Homo sapiens]
Length = 1411
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 540 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 597
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 598 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 642
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 643 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 695
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 696 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 749
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 750 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 803
>gi|57164977 Treacher Collins-Franceschetti syndrome 1 isoform a
[Homo sapiens]
Length = 1450
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 617 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 674
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 675 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 719
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 720 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 772
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 773 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 826
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 827 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 880
>gi|57164979 Treacher Collins-Franceschetti syndrome 1 isoform c
[Homo sapiens]
Length = 958
Score = 43.5 bits (101), Expect = 9e-04
Identities = 69/298 (23%), Positives = 111/298 (37%), Gaps = 44/298 (14%)
Query: 35 SHDEQQVEAGAVQLRADPAIKEPLPVEDVCPKVVSTPPSV--------TEPPEKELSTVS 86
S D ++ A +A PA+K +P CPK +T S T+ P K + S
Sbjct: 617 SADSEEAPAAMTAAQAKPALK--IPQTKACPKKTNTTASAKVAPVRVGTQAPRKAGTATS 674
Query: 87 KLPAEPPALLQTHPPCRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLE 146
+ P T P S SS +D + K LA+T G+AKS+
Sbjct: 675 PAGSSPAVAGGTQRPAEDSSSS----EESD---------SEEEKTGLAVTVGQAKSVG-- 719
Query: 147 CPLSSPKGVLFSSKSAEVCKQ--DSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEG 204
KG+ + S V +P K P V AEK+ E + E +E
Sbjct: 720 ------KGLQVKAASVPVKGSLGQGTAPVLPGKTGPTVTQVKAEKQEDSESSEEESDSE- 772
Query: 205 TGDAVLGEKVLEEALLSREHVLELENSKGPSLASLEGEEDKGKSSSSQVVGPVQEEEYVA 264
+A ++ ++ + ++ PS K ++++Q ++
Sbjct: 773 --EAAASPAQVKTSVKKTQAKANPAAARAPSAKGTISAPGKVVTAAAQA----KQRSPSK 826
Query: 265 EKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEE 322
K P R +++ T LA+ PA + KA + + G EE +EE D EE
Sbjct: 827 VKPPVRNPQNS-TVLAR---GPASVPSVGKAVATAAQAQTGPEEDSGSSEEESDSEEE 880
>gi|169212742 PREDICTED: similar to hCG1654128 [Homo sapiens]
Length = 1015
Score = 43.1 bits (100), Expect = 0.001
Identities = 64/260 (24%), Positives = 102/260 (39%), Gaps = 41/260 (15%)
Query: 92 PPALLQTHPPCR-RSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLECPLS 150
PP L HP + SE+ G T +R+ T +L +A G S+PL S
Sbjct: 110 PPGLQPRHPTAQIPSETEG-----TCVRITLPTLDHQPVRLRVAQPSG--LSVPLFSHAS 162
Query: 151 S---PKGVLFSSKSAEVCKQDSPFSRVPRKVQPGYPVVPAEKRSSGERARETGGAEGTGD 207
S P F + E +++ V ++V P +G + + G G
Sbjct: 163 SRPHPHSPCFFTCQGESFREEKEM--VTQRVSPP---------PAGSQRTQAGSGHCAGG 211
Query: 208 AVLGEKVLEEALLSREHVLELENSKGPSLASLE----GEEDKGKSSSSQVVGPVQEEEYV 263
+ EK +A + V + E+ GP AS G+E+ G +S V ++E
Sbjct: 212 LLGHEKHAMDASPTEHGVGQEED--GPEDASPTEHDVGQEEDGPEDASPTEHGVDQQEDG 269
Query: 264 AEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEEG 323
E +++ TE D P DA+ + GV+ E E E G+D+ E+G
Sbjct: 270 PE-------DASPTEHGVDQQEDGPE--DARPTEHGVDQEEDGPEDASLTEHGVDQQEDG 320
Query: 324 LDRNEESLDRNEEGLDRNEE 343
E E G+D+ E+
Sbjct: 321 ----PEDASPTEHGIDQEED 336
Score = 33.1 bits (74), Expect = 1.2
Identities = 42/163 (25%), Positives = 59/163 (36%), Gaps = 21/163 (12%)
Query: 223 EHVLELENSKGPSLASL-----EGEEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHT 277
EH ++ E GP ASL + +ED + +S G QEE+ + P T
Sbjct: 294 EHGVDQEED-GPEDASLTEHGVDQQEDGPEDASPTEHGIDQEEDGPEDASP--------T 344
Query: 278 ELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEG 337
E D P A + GV+ E E E G+D+ + E E G
Sbjct: 345 EHGVDQEEDGPEDASPTEHEHGVDQEEDGPEDASPTEHGVDQED-----GPEDARPTEHG 399
Query: 338 LDRNE--EIKRAAFQIISQVISEATEQVLATTVGKVAGRVCQA 378
+D+ + E R + Q VG AGR C A
Sbjct: 400 VDQEDGPEDARPTEHGVDQEDGPEDASRTEHGVGHRAGRACAA 442
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 43.1 bits (100), Expect = 0.001
Identities = 111/494 (22%), Positives = 157/494 (31%), Gaps = 82/494 (16%)
Query: 103 RRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVLFSSKSA 162
+R E + RLRP T D+ + + P E PKGV + A
Sbjct: 965 KRKEPPDTTSSGDQKRLRPSTSVDEEDEESERERDRDMADTPCELAKRDPKGVGVRRRPA 1024
Query: 163 EVCKQDSPFSRVPRK-VQPGYPVVPAEKRSSGERARETGGAEGTGDAVLGEKVLEEALLS 221
+ DS ++ + E+ + E E + + D E E+ LS
Sbjct: 1025 RPLELDSGGEEDEKESLSEEQESTEEEEEAEEEEEEEDDDDDDSDDRDESENDDEDTALS 1084
Query: 222 R-----------EHVLELENSKGPSLASLEGEEDKGKSSSSQ------------VVGPVQ 258
E + + SK + +S E E SSS+ V +
Sbjct: 1085 EASEKDEGDSDEEETVSIVTSKAEATSSSESSESSEFESSSESSPSSSEDEEEVVAREEE 1144
Query: 259 EEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGELGNEESLDRNEEGLD 318
EEE E + + SA E + D A A A D LG EE +D E +
Sbjct: 1145 EEEEEEEMVAEESMASAGPEDFEQDGEEAALAPGAPAVD-----SLGMEEEVDIETEAVA 1199
Query: 319 RNEEGLDRNEESLDRN-EEGLDRNEEIKRAAFQIISQVISEATEQVLATTVGKVAGRVCQ 377
E +E L EE D E + Q
Sbjct: 1200 PEERPSMLDEPPLPVGVEEPADSREPPEEPGLS--------------------------Q 1233
Query: 378 ASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPP-------DAGLPLPGLPAEGSP 430
+ E V + L P+ A E PP LP P P SP
Sbjct: 1234 EGAMLLSPEPPAKEVEARPPLSPERAPEHDLEVEPEPPMMLPLPLQPPLPPPRPPRPPSP 1293
Query: 431 P--PKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAGILVEDATCV 488
P P+T + S+ P + P H L LA + +E +P G +
Sbjct: 1294 PPEPETTDASHPSVPPEPLAEDHP---PHTPGLCGSLAKSQSTETVPATPGGEPPLSGGS 1350
Query: 489 TCMSDSSQSVP------LVASPGHCSDSF-STSGLEDSCTETSSSPRDKAITP--PLP-- 537
+ +S SS VP SP S T G + S T T S P + P PLP
Sbjct: 1351 SGLSLSSPQVPGSPFSYPAPSPSLSSGGLPRTPGRDFSFTPTFSEPSGPLLLPVCPLPTG 1410
Query: 538 ---ESTVPFSNGVL 548
E + P ++ VL
Sbjct: 1411 RRDERSGPLASPVL 1424
Score = 33.5 bits (75), Expect = 0.92
Identities = 40/165 (24%), Positives = 65/165 (39%), Gaps = 21/165 (12%)
Query: 46 VQLRADPAIKEPLPVEDVCPKVVSTPPSVTEPPEKELSTVSKLPAEPPA-LLQTHPP--- 101
+++ +P + PLP++ P PP PP + +T + P+ PP L + HPP
Sbjct: 1264 LEVEPEPPMMLPLPLQPPLPP--PRPPRPPSPPPEPETTDASHPSVPPEPLAEDHPPHTP 1321
Query: 102 -----CRRSESSGILPNTTDMRLRPGTRRDDSTKLELALTGGEAKSIPLECPLSSPKGVL 156
+S+S+ +P T G L+L+ + P P SP L
Sbjct: 1322 GLCGSLAKSQSTETVPATPG-----GEPPLSGGSSGLSLSSPQVPGSPFSYPAPSPS--L 1374
Query: 157 FSSKSAEVCKQDSPFSRVPRKVQPGYP-VVPAEKRSSGERARETG 200
S +D FS P +P P ++P +G R +G
Sbjct: 1375 SSGGLPRTPGRD--FSFTPTFSEPSGPLLLPVCPLPTGRRDERSG 1417
>gi|169163653 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 736 LRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVD 795
L +L M L Y T PT ++C A +G W R ++ N+V+I ++D
Sbjct: 413 LENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNGQWHRG-ILQQLLPPNQVKIWFMD 471
Query: 796 YGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMT-GNTA 854
YG + + +++++ DF+ +P P S SP+ DA + +++ A
Sbjct: 472 YGSSEAIPSIYVKKLKQDFILVPLFS--------FPCSLTCLHSPDRDARIFQLSIFKQA 523
Query: 855 LLAQV 859
LL QV
Sbjct: 524 LLGQV 528
Score = 36.2 bits (82), Expect = 0.14
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P EI G W RA V+ + + EV+I +VDYG KRV ++ L I F+ L
Sbjct: 945 PYEIGQTACVAKYSGKWCRAAVLT--QVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLL 1002
Query: 818 PFQGAEVLLD 827
Q L+
Sbjct: 1003 ESQAFRCCLN 1012
Score = 34.3 bits (77), Expect = 0.54
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P+ ++ A D A +RA V+ N E+ ++DYG V + +++ +F+T+
Sbjct: 1489 PLVGDLVVAEYSGDNAIYRA-VIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLTV 1547
Query: 818 PFQGAEVLLDSV 829
P G L V
Sbjct: 1548 PQLGIHAFLSGV 1559
>gi|169164192 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 736 LRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVD 795
L +L M L Y T PT ++C A +G W R ++ N+V+I ++D
Sbjct: 413 LENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNGQWHRG-ILQQLLPPNQVKIWFMD 471
Query: 796 YGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMT-GNTA 854
YG + + +++++ DF+ +P P S SP+ DA + +++ A
Sbjct: 472 YGSSEAIPSIYVKKLKQDFILVPLFS--------FPCSLTCLHSPDRDARIFQLSIFKQA 523
Query: 855 LLAQV 859
LL QV
Sbjct: 524 LLGQV 528
Score = 36.2 bits (82), Expect = 0.14
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P EI G W RA V+ + + EV+I +VDYG KRV ++ L I F+ L
Sbjct: 945 PYEIGQTACVAKYSGKWCRAAVLT--QVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLL 1002
Query: 818 PFQGAEVLLD 827
Q L+
Sbjct: 1003 ESQAFRCCLN 1012
Score = 34.3 bits (77), Expect = 0.54
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P+ ++ A D A +RA V+ N E+ ++DYG V + +++ +F+T+
Sbjct: 1489 PLVGDLVVAEYSGDNAIYRA-VIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLTV 1547
Query: 818 PFQGAEVLLDSV 829
P G L V
Sbjct: 1548 PQLGIHAFLSGV 1559
>gi|169163210 PREDICTED: similar to tudor domain containing 1 [Homo
sapiens]
Length = 2080
Score = 42.7 bits (99), Expect = 0.002
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 10/125 (8%)
Query: 736 LRSLDQQMYLCYSQPGIPTLPTPVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVD 795
L +L M L Y T PT ++C A +G W R ++ N+V+I ++D
Sbjct: 413 LENLTAHMTLHYDTVCQETSPTCDNFGLLCVARRRNGQWHRG-ILQQLLPPNQVKIWFMD 471
Query: 796 YGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMPLSDDDQFSPEADAAMSEMT-GNTA 854
YG + + +++++ DF+ +P P S SP+ DA + +++ A
Sbjct: 472 YGSSEAIPSIYVKKLKQDFILVPLFS--------FPCSLTCLHSPDRDARIFQLSIFKQA 523
Query: 855 LLAQV 859
LL QV
Sbjct: 524 LLGQV 528
Score = 36.2 bits (82), Expect = 0.14
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P EI G W RA V+ + + EV+I +VDYG KRV ++ L I F+ L
Sbjct: 945 PYEIGQTACVAKYSGKWCRAAVLT--QVSKEVDIVFVDYGYQKRVLIEDLCAINPRFLLL 1002
Query: 818 PFQGAEVLLD 827
Q L+
Sbjct: 1003 ESQAFRCCLN 1012
Score = 34.3 bits (77), Expect = 0.54
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 758 PVEITVICAAPGADGAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTL 817
P+ ++ A D A +RA V+ N E+ ++DYG V + +++ +F+T+
Sbjct: 1489 PLVGDLVVAEYSGDNAIYRA-VIKKILPGNSFEVEFIDYGNSAIVNTSKIYELQREFLTV 1547
Query: 818 PFQGAEVLLDSV 829
P G L V
Sbjct: 1548 PQLGIHAFLSGV 1559
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 42.0 bits (97), Expect = 0.003
Identities = 94/381 (24%), Positives = 144/381 (37%), Gaps = 58/381 (15%)
Query: 244 DKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVEGE 303
D +SS+S +QE + VAE L + A + AK + PP + +D + GE
Sbjct: 236 DPEESSASGETSGLQEADGVAEILEAVTYTQASPKEAKVEPINTPPTPSSPFEDMELSGE 295
Query: 304 LGNEESLDRNEEGLDRNEEGLDRNEESLDRNEEGLDR-NEEIKRAAFQIISQVISEATEQ 362
E +L+ + ++ + E L+ EG+ + + + + A E+
Sbjct: 296 PVPEGTLETTNMSIIQHSSPKQGSGEILNDTLEGVHSVDGDPITDSGSGAGAFLDIAEEK 355
Query: 363 VLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVL------------GPDTAEPATAEA 410
LA T AG G+ E S VP T+ GPD E A A
Sbjct: 356 NLAAT---AAGLAEVPISTAGEAEASSVPTGGPTLSMSTENPEEGVTPGPDNEERLAATA 412
Query: 411 AVAPPDAGLPLPG-LPAEGSPPPKTYVS-CLKSLLSSPTKDSKPNISAHHISLASCLALT 468
A +A +PG + A G P + +S +SL T S + A+ ++L+
Sbjct: 413 A-GEAEALASMPGEVEASGVAPGELDLSMSAQSLGEEATVGPSSEDSLTTAAAATEVSLS 471
Query: 469 TPSEELPDRAGILVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCT----ETS 524
T +E + +G+ + +T ++V + PG D + + E T E+
Sbjct: 472 TFEDE--EASGVPTDGLAPLTATMAPERAV--TSGPGDEEDLAAATTEEPLITAGGEESG 527
Query: 525 SSPRDKAITPPLPESTVPFSNGVL---------------KGELSDLGAE----------D 559
S P D PPLP TV + KGE D G E
Sbjct: 528 SPPPD---GPPLPLPTVAPERWITPAQREHVGMKGQAGPKGEKGDAGEELPGPPEPSGPV 584
Query: 560 GWTMDAEADHSG---GSDRNS 577
G T AEA+ SG GSD S
Sbjct: 585 GPTAGAEAEGSGLGWGSDVGS 605
>gi|38261962 activating transcription factor 7 interacting protein
[Homo sapiens]
Length = 1270
Score = 41.2 bits (95), Expect = 0.004
Identities = 98/463 (21%), Positives = 163/463 (35%), Gaps = 53/463 (11%)
Query: 70 TPPSVTEPPEKELSTVSKLPAEP------PALLQTHPPCRRSESSGILPNTTDMRLRPGT 123
+P ++T P VSKLPAEP P L P +SG+L + P +
Sbjct: 113 SPHNITPEP------VSKLPAEPVSGDPAPGDLDAGDP-----ASGVLASGDSTSGDPTS 161
Query: 124 RRDDSTKLELA-LTGGEAKSIPLECPLSSPKGVLFSSKSAEVCKQDSPFSRVPRKVQPGY 182
S+ T G+A S + SP +A+ P S P PG
Sbjct: 162 SEPSSSDAASGDATSGDAPSGDV-----SPGDATSGDATADDLSSGDPTSSDPI---PGE 213
Query: 183 PVVPAEKRSSGERARETGGAEGTG-DAVLGEKVLEEALLSREHVLELENSKGPSLASLEG 241
PV P E S A + +E T D G + +L +S+ S G
Sbjct: 214 PV-PVEPISGDCAADDIASSEITSVDLASGAPASTDPASDDLASGDLSSSELASDDLATG 272
Query: 242 EEDKGKSSSSQVVGPVQEEEYVAEKLPSRFIESAHTELAKDDAAPAPPVADAKAQDRGVE 301
E + +S E + V P I++ KDD AD K + +
Sbjct: 273 ELASDELTSESTFDRTFEPKSVPVCEPVPEIDNIEPSSNKDDDFLEKNGADEKLEQIQSK 332
Query: 302 GELGNEESLDRNEEGLDRNEEGLDRNEESL--DRNEEGLDRNEEIKRAAFQIISQVISEA 359
L + D N +D NEE L+ ++ ++ DR E + EE + IS +
Sbjct: 333 DSLDEKNKADNN---IDANEETLETDDTTICSDRPPENEKKVEEDIITELALGEDAISSS 389
Query: 360 TEQVLATTVGKVAGRVCQASQLQGQKEESCVPVHQKTVLGPDTAEPATAEAAVAPPDAGL 419
E + Q + + + V + V+ + +E D +
Sbjct: 390 ME-------------IDQGEKNEDETSADLVETINENVIEDNKSENILENTDSMETDEII 436
Query: 420 PLPGLPAEGSPPPKTYVSCLKSLLSSPTKDSKPNISAHHISLASCLALTTPSEELPDRAG 479
P+ E P + ++C P ++ P++ S + SE LP A
Sbjct: 437 PI----LEKLAPSEDELTCFSKTSLLPIDETNPDLEEKMESSFGSPSKQESSESLPKEAF 492
Query: 480 ILVEDATCVTCMSDSSQSVPLVASPGHCSDSFSTSGLEDSCTE 522
+++ D ++ D S+ +++ CS + S +D+ E
Sbjct: 493 LVLSDEEDISGEKDESE---VISQNETCSPAEVESNEKDNKPE 532
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,571,823
Number of Sequences: 37866
Number of extensions: 1997771
Number of successful extensions: 9206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 8259
Number of HSP's gapped (non-prelim): 1064
length of query: 903
length of database: 18,247,518
effective HSP length: 111
effective length of query: 792
effective length of database: 14,044,392
effective search space: 11123158464
effective search space used: 11123158464
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.