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Search of human proteins with 42741682
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
(320 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 638 0.0
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 617 e-177
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 96 4e-20
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 96 4e-20
gi|52426743 cisplatin resistance-associated overexpressed protei... 95 7e-20
gi|19923485 cisplatin resistance-associated overexpressed protei... 95 7e-20
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 94 2e-19
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 94 2e-19
gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo s... 91 2e-18
gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo s... 90 2e-18
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 88 1e-17
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 87 2e-17
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 87 2e-17
gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain ... 84 2e-16
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 82 6e-16
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 82 8e-16
gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens] 79 4e-15
gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens] 79 4e-15
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 79 4e-15
gi|116812577 LUC7-like 2 [Homo sapiens] 77 2e-14
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 77 2e-14
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 76 5e-14
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 76 5e-14
gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo ... 76 5e-14
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 76 5e-14
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 76 5e-14
gi|50962882 G patch domain containing 8 [Homo sapiens] 76 5e-14
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 76 5e-14
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 75 6e-14
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 75 8e-14
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 638 bits (1646), Expect = 0.0
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS 60
MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS
Sbjct: 1 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS 60
Query: 61 RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES 120
RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES
Sbjct: 61 RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES 120
Query: 121 DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL 180
DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL
Sbjct: 121 DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL 180
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR 240
SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR
Sbjct: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR 240
Query: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK
Sbjct: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
Query: 301 RRTRSRSPESQVIGENTKQP 320
RRTRSRSPESQVIGENTKQP
Sbjct: 301 RRTRSRSPESQVIGENTKQP 320
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 617 bits (1590), Expect = e-177
Identities = 309/309 (100%), Positives = 309/309 (100%)
Query: 1 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS 60
MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS
Sbjct: 1 MSTKNFRVSDGDWICPDKKCGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKS 60
Query: 61 RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES 120
RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES
Sbjct: 61 RGLFSANDWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREES 120
Query: 121 DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL 180
DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL
Sbjct: 121 DGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL 180
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR 240
SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR
Sbjct: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR 240
Query: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK
Sbjct: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
Query: 301 RRTRSRSPE 309
RRTRSRSPE
Sbjct: 301 RRTRSRSPE 309
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 95.9 bits (237), Expect = 4e-20
Identities = 71/158 (44%), Positives = 88/158 (55%), Gaps = 14/158 (8%)
Query: 152 ESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSK-SRSSH 210
ES EE+D+ E K K D + SK N + + E K+ S+ RSRSK S+SS
Sbjct: 1781 ESSSEEKDDYEIFVKVK-------DTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSE 1833
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+S R+S SRSR+R RS S S +S++RS SR R R R S+SRS SR R S S
Sbjct: 1834 HKSRKRTSE---SRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRR-SVSKE 1889
Query: 271 KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
KR S S R RK R RSSS +RK R RSR+P
Sbjct: 1890 KRKRSPKHRSKSRERK--RKRSSSRDNRKTVRARSRTP 1925
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
R+ + R K+ G S+ KE + + + + K K D ++ + A
Sbjct: 1871 RRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRER---KRKRSSSRD------NRKTVRAR 1921
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS-SRS---RSRSRSRSSSSSQSRSRSS 244
S + +S+ SR + S R S S SPS SR+ RSR+ SR S + RSR+
Sbjct: 1922 SRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1981
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR--- 301
SR RSR+ +SR+ SR R S R+RS+S S R+R R R S S R+KR
Sbjct: 1982 SR-RSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRS 2040
Query: 302 RTRSRSPE 309
R RSP+
Sbjct: 2041 SERGRSPK 2048
Score = 52.0 bits (123), Expect = 7e-07
Identities = 64/207 (30%), Positives = 87/207 (42%), Gaps = 34/207 (16%)
Query: 130 KKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASE 189
K KK + + G K S + E S+ + E SK S+
Sbjct: 1802 KSKKNKNRDKGEKE-KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860
Query: 190 EED---SNKKKSNRRSRSKSRSSHS--------------RSSSRSSSPSSSRS-----RS 227
S +++ + RSRSKSR S +S R SSSR R+
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRA 1920
Query: 228 RSRSRSSSSSQSRSRS-SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS--SSSPERN 284
RSR+ S +SRS + S R RSRS G + S R S +P +RS + S S +P R
Sbjct: 1921 RSRT---PSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSR- 1976
Query: 285 RKRSRSRSSSSGDRK----KRRTRSRS 307
R R+ SR S + R+ RR RSRS
Sbjct: 1977 RSRTPSRRSRTPSRRSRTPSRRRRSRS 2003
Score = 51.6 bits (122), Expect = 9e-07
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 170 DEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS 229
D D A ++ E S+++K + K + +H +S + + + R
Sbjct: 1760 DVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRD 1819
Query: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS-SSPERNRKRS 288
S S S +S+S S +SR R S+SRS +R KRS S S S R+R RS
Sbjct: 1820 SSLRSRSKRSKS---SEHKSRKRTSESRSRAR---------KRSSKSKSHRSQTRSRSRS 1867
Query: 289 RSRSSSSGDRKKRRTR 304
R R SS R K R R
Sbjct: 1868 RRRRRSSRSRSKSRGR 1883
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 95.9 bits (237), Expect = 4e-20
Identities = 71/158 (44%), Positives = 88/158 (55%), Gaps = 14/158 (8%)
Query: 152 ESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSK-SRSSH 210
ES EE+D+ E K K D + SK N + + E K+ S+ RSRSK S+SS
Sbjct: 1781 ESSSEEKDDYEIFVKVK-------DTHEKSKKNKNRDKGEKEKKRDSSLRSRSKRSKSSE 1833
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+S R+S SRSR+R RS S S +S++RS SR R R R S+SRS SR R S S
Sbjct: 1834 HKSRKRTSE---SRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSKSRGRR-SVSKE 1889
Query: 271 KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
KR S S R RK R RSSS +RK R RSR+P
Sbjct: 1890 KRKRSPKHRSKSRERK--RKRSSSRDNRKTVRARSRTP 1925
Score = 67.0 bits (162), Expect = 2e-11
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 17/188 (9%)
Query: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
R+ + R K+ G S+ KE + + + + K K D ++ + A
Sbjct: 1871 RRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRER---KRKRSSSRD------NRKTVRAR 1921
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS-SRS---RSRSRSRSSSSSQSRSRSS 244
S + +S+ SR + S R S S SPS SR+ RSR+ SR S + RSR+
Sbjct: 1922 SRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSRRSRTP 1981
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR--- 301
SR RSR+ +SR+ SR R S R+RS+S S R+R R R S S R+KR
Sbjct: 1982 SR-RSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRRRFSRSPIRRKRSRS 2040
Query: 302 RTRSRSPE 309
R RSP+
Sbjct: 2041 SERGRSPK 2048
Score = 52.0 bits (123), Expect = 7e-07
Identities = 64/207 (30%), Positives = 87/207 (42%), Gaps = 34/207 (16%)
Query: 130 KKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASE 189
K KK + + G K S + E S+ + E SK S+
Sbjct: 1802 KSKKNKNRDKGEKE-KKRDSSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQ 1860
Query: 190 EED---SNKKKSNRRSRSKSRSSHS--------------RSSSRSSSPSSSRS-----RS 227
S +++ + RSRSKSR S +S R SSSR R+
Sbjct: 1861 TRSRSRSRRRRRSSRSRSKSRGRRSVSKEKRKRSPKHRSKSRERKRKRSSSRDNRKTVRA 1920
Query: 228 RSRSRSSSSSQSRSRS-SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS--SSSPERN 284
RSR+ S +SRS + S R RSRS G + S R S +P +RS + S S +P R
Sbjct: 1921 RSRT---PSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRTPSRRSRTPSR- 1976
Query: 285 RKRSRSRSSSSGDRK----KRRTRSRS 307
R R+ SR S + R+ RR RSRS
Sbjct: 1977 RSRTPSRRSRTPSRRSRTPSRRRRSRS 2003
Score = 51.6 bits (122), Expect = 9e-07
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 13/136 (9%)
Query: 170 DEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS 229
D D A ++ E S+++K + K + +H +S + + + R
Sbjct: 1760 DVGRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVKDTHEKSKKNKNRDKGEKEKKRD 1819
Query: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS-SSPERNRKRS 288
S S S +S+S S +SR R S+SRS +R KRS S S S R+R RS
Sbjct: 1820 SSLRSRSKRSKS---SEHKSRKRTSESRSRAR---------KRSSKSKSHRSQTRSRSRS 1867
Query: 289 RSRSSSSGDRKKRRTR 304
R R SS R K R R
Sbjct: 1868 RRRRRSSRSRSKSRGR 1883
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 95.1 bits (235), Expect = 7e-20
Identities = 70/195 (35%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS--- 188
K++ G A A++ + E EE D DE L K K + +E E + + + +
Sbjct: 215 KQHMGYAKIKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRR 274
Query: 189 EEEDSNKKKSN---RRSRSKSRSSHS-RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
EEE+ K+++ RR RS+SRS HS R+S R S S RSRSR R S S+ R RS
Sbjct: 275 EEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSR 334
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNR-KRSRSRSSSSGDRKKRRT 303
S +RS K RS SR R S S ++SY S S +R + ++S+ + D KK
Sbjct: 335 SHDRSE---RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSV 391
Query: 304 RSRSPESQVIGENTK 318
+S S E Q NT+
Sbjct: 392 KSGSREKQSEDTNTE 406
Score = 68.6 bits (166), Expect = 7e-12
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 5/188 (2%)
Query: 113 EYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDE----DLSKYK 168
E + + + + DE +K+K+ R + +E +++ EEE+ ++ D + K
Sbjct: 232 EKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRK 291
Query: 169 LDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR 228
+ S S + ++ + RRSRS+ R SRS RS SRSR R
Sbjct: 292 RSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRR-RSRSHDRSERKHRSRSRDR 350
Query: 229 SRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRS 288
RS+S + RS SR+R + R SK + S SS + S S K S
Sbjct: 351 RRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKES 410
Query: 289 RSRSSSSG 296
+++ +G
Sbjct: 411 DTKNEVNG 418
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 95.1 bits (235), Expect = 7e-20
Identities = 70/195 (35%), Positives = 99/195 (50%), Gaps = 11/195 (5%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS--- 188
K++ G A A++ + E EE D DE L K K + +E E + + + +
Sbjct: 215 KQHMGYAKIKATVEELKEKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRR 274
Query: 189 EEEDSNKKKSN---RRSRSKSRSSHS-RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
EEE+ K+++ RR RS+SRS HS R+S R S S RSRSR R S S+ R RS
Sbjct: 275 EEEEREKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSR 334
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNR-KRSRSRSSSSGDRKKRRT 303
S +RS K RS SR R S S ++SY S S +R + ++S+ + D KK
Sbjct: 335 SHDRSE---RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSV 391
Query: 304 RSRSPESQVIGENTK 318
+S S E Q NT+
Sbjct: 392 KSGSREKQSEDTNTE 406
Score = 68.6 bits (166), Expect = 7e-12
Identities = 49/188 (26%), Positives = 81/188 (43%), Gaps = 5/188 (2%)
Query: 113 EYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDE----DLSKYK 168
E + + + + DE +K+K+ R + +E +++ EEE+ ++ D + K
Sbjct: 232 EKLRKRTEEPDRDERLKKEKQEREEREKEREREREERERKRRREEEEREKERARDRERRK 291
Query: 169 LDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR 228
+ S S + ++ + RRSRS+ R SRS RS SRSR R
Sbjct: 292 RSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRR-RSRSHDRSERKHRSRSRDR 350
Query: 229 SRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRS 288
RS+S + RS SR+R + R SK + S SS + S S K S
Sbjct: 351 RRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTNTESKES 410
Query: 289 RSRSSSSG 296
+++ +G
Sbjct: 411 DTKNEVNG 418
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 94.0 bits (232), Expect = 2e-19
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 89 NTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEV 148
+T + K +ER ERE + E+E+ G+ + ++++K R K +
Sbjct: 379 DTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREK--------DKE 430
Query: 149 EDKESEGEEEDE-DEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207
+D+E E E+E E D D K K + E E + D SK E K+K +++SR+ R
Sbjct: 431 KDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK--------EIDEKRKKDKKSRTPPR 482
Query: 208 SSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE---RSRSRGSKSRSSSRSHR 264
S ++ SRSSS R RSRS SRS +S++ R SSR RSR++ K R R H
Sbjct: 483 SYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHI 542
Query: 265 GSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGE 315
R+RS S SS +R+ K ++S+S K + ++ P+S V E
Sbjct: 543 SERRERERSTSMRKSSNDRDGKEKLEKNSTS---LKEKEHNKEPDSSVSKE 590
Score = 70.9 bits (172), Expect = 1e-12
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 189 EEEDSNKKKSNR---RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
E SN++K R +RSKSRSS S R S S RSRS +RSRS + RS+S
Sbjct: 296 ESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 355
Query: 246 RERSRS---RGSKSRSSSRSHRGSSSPR---KRSYSSSSSSPERNRKRSRSRSSSSG--- 296
++RS+S R S+SRS SR R + + K ER R++ R + G
Sbjct: 356 KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK 415
Query: 297 DRKKRRTRSRSPESQVIGENTKQ 319
DR K R + R + + E ++
Sbjct: 416 DRDKEREKDREKDKEKDRERERE 438
Score = 66.6 bits (161), Expect = 3e-11
Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 185 LDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSR---SRSRSRSRSSSSSQSRS 241
+ A+ E +S K SN R +SRS H+RS SRSSS S SR S+S+ RSR S ++SRS
Sbjct: 289 ISAAIEPESGK--SNERKGGRSRS-HTRSKSRSSSKSHSRRKRSQSKHRSR--SHNRSRS 343
Query: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR 301
R R RS+S K RS SR R S R RS+S R + + + R DR+K
Sbjct: 344 RQKDRRRSKS-PHKKRSKSRERRKS---RSRSHSRDKRKDTREKIKEKERVKEK-DREKE 398
Query: 302 RTRSRSPESQ 311
R R + E +
Sbjct: 399 REREKEREKE 408
Score = 65.5 bits (158), Expect = 6e-11
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQS---RSRS 243
A+ +E K R ++S ++ S +S+ RSRS +RS+S SSS+S R RS
Sbjct: 270 AAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRS 329
Query: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRT 303
S+ RSRS ++SRS + R S SP K+ S R R++SRSRS S RK R
Sbjct: 330 QSKHRSRSH-NRSRSRQKDRRRSKSPHKK------RSKSRERRKSRSRSHSRDKRKDTRE 382
Query: 304 RSRSPE 309
+ + E
Sbjct: 383 KIKEKE 388
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 215 SRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSY 274
S + P S +S R RS S ++S+SRSSS+ SR + S+S+ SRSH S S +K
Sbjct: 290 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 349
Query: 275 SSSSSSPER--NRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
S S +R +R+R +SRS S K++ TR + E + + E ++
Sbjct: 350 RSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDRE 396
Score = 62.0 bits (149), Expect = 7e-10
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 16/203 (7%)
Query: 117 REESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED 176
R +S + R+++K R ++ K+ +K E +E +++D K + E E E
Sbjct: 350 RSKSPHKKRSKSRERRKSRSRSHSRDK-RKDTREKIKE-KERVKEKDREKEREREKEREK 407
Query: 177 DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS-HSRSSSRSSSPSSSRSRSRSRSRSSS 235
+ + K N D +E + +++K + R + R H + + + + R + RS
Sbjct: 408 EKERGK-NKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 466
Query: 236 SSQSRSR---SSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS---SPERNRKRSR 289
+ R + S + RS + +SRSSSR R R+RS SSS S S RK SR
Sbjct: 467 IDEKRKKDKKSRTPPRSYNASRRSRSSSRERR-----RRRSRSSSRSPRTSKTIKRKSSR 521
Query: 290 SRSSSSGDRK-KRRTRSRSPESQ 311
S S S ++K K+R + R S+
Sbjct: 522 SPSPRSRNKKDKKREKERDHISE 544
Score = 61.6 bits (148), Expect = 9e-10
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 131 KKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE 190
KK+ + + + DK + E+ ++++ K K E E E + + K + +
Sbjct: 356 KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEK-ERGKN 414
Query: 191 EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSR 250
+D +K++ R + K + R R R + + + + + + RS + R
Sbjct: 415 KDRDKEREKDREKDKEKD---REREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR 471
Query: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK-RRTRSRSPE 309
+ KSR+ RS+ S R SSS ER R+RSRS S S K +R SRSP
Sbjct: 472 KKDKKSRTPPRSYNASRRSR-------SSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPS 524
Query: 310 SQVIGENTKQ 319
+ + K+
Sbjct: 525 PRSRNKKDKK 534
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
+S + S +K+S + RS+ SH+RS SR S+S + RS+S +SRSRS SR
Sbjct: 318 SSSKSHSRRKRSQSKHRSR---SHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSR 374
Query: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG---DRKKRRT 303
++ + K + R + ER + + R + D++K R
Sbjct: 375 DKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRE 434
Query: 304 RSRSPESQVIGENTKQ 319
R R E + + K+
Sbjct: 435 REREKEHEKDRDKEKE 450
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 186 DASEEEDSNKKKSNRRSRSKSRS-SHSR-----------SSSRSSSPSSSRSRSRSRSRS 233
D + +KK+S R R KSRS SHSR R + R R + R
Sbjct: 347 DRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKERE 406
Query: 234 SSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSS 293
+ +++ +ER + R K + R K ++ ++R + RS
Sbjct: 407 KEKERGKNKDRDKEREKDR-EKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK 465
Query: 294 SSGDRKKRRTRSRSP 308
+++K+ +SR+P
Sbjct: 466 EIDEKRKKDKKSRTP 480
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 94.0 bits (232), Expect = 2e-19
Identities = 75/231 (32%), Positives = 115/231 (49%), Gaps = 23/231 (9%)
Query: 89 NTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEV 148
+T + K +ER ERE + E+E+ G+ + ++++K R K +
Sbjct: 263 DTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREK--------DKE 314
Query: 149 EDKESEGEEEDE-DEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207
+D+E E E+E E D D K K + E E + D SK E K+K +++SR+ R
Sbjct: 315 KDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK--------EIDEKRKKDKKSRTPPR 366
Query: 208 SSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE---RSRSRGSKSRSSSRSHR 264
S ++ SRSSS R RSRS SRS +S++ R SSR RSR++ K R R H
Sbjct: 367 SYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHI 426
Query: 265 GSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGE 315
R+RS S SS +R+ K ++S+S K + ++ P+S V E
Sbjct: 427 SERRERERSTSMRKSSNDRDGKEKLEKNSTS---LKEKEHNKEPDSSVSKE 474
Score = 70.9 bits (172), Expect = 1e-12
Identities = 50/143 (34%), Positives = 70/143 (48%), Gaps = 12/143 (8%)
Query: 189 EEEDSNKKKSNR---RSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
E SN++K R +RSKSRSS S R S S RSRS +RSRS + RS+S
Sbjct: 180 ESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPH 239
Query: 246 RERSRS---RGSKSRSSSRSHRGSSSPR---KRSYSSSSSSPERNRKRSRSRSSSSG--- 296
++RS+S R S+SRS SR R + + K ER R++ R + G
Sbjct: 240 KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK 299
Query: 297 DRKKRRTRSRSPESQVIGENTKQ 319
DR K R + R + + E ++
Sbjct: 300 DRDKEREKDREKDKEKDRERERE 322
Score = 66.6 bits (161), Expect = 3e-11
Identities = 54/130 (41%), Positives = 71/130 (54%), Gaps = 13/130 (10%)
Query: 185 LDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSR---SRSRSRSRSSSSSQSRS 241
+ A+ E +S K SN R +SRS H+RS SRSSS S SR S+S+ RSR S ++SRS
Sbjct: 173 ISAAIEPESGK--SNERKGGRSRS-HTRSKSRSSSKSHSRRKRSQSKHRSR--SHNRSRS 227
Query: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR 301
R R RS+S K RS SR R S R RS+S R + + + R DR+K
Sbjct: 228 RQKDRRRSKS-PHKKRSKSRERRKS---RSRSHSRDKRKDTREKIKEKERVKEK-DREKE 282
Query: 302 RTRSRSPESQ 311
R R + E +
Sbjct: 283 REREKEREKE 292
Score = 65.5 bits (158), Expect = 6e-11
Identities = 47/126 (37%), Positives = 67/126 (53%), Gaps = 10/126 (7%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQS---RSRS 243
A+ +E K R ++S ++ S +S+ RSRS +RS+S SSS+S R RS
Sbjct: 154 AAAKELEEVMKRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRS 213
Query: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRT 303
S+ RSRS ++SRS + R S SP K+ S R R++SRSRS S RK R
Sbjct: 214 QSKHRSRSH-NRSRSRQKDRRRSKSPHKK------RSKSRERRKSRSRSHSRDKRKDTRE 266
Query: 304 RSRSPE 309
+ + E
Sbjct: 267 KIKEKE 272
Score = 64.7 bits (156), Expect = 1e-10
Identities = 39/107 (36%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 215 SRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSY 274
S + P S +S R RS S ++S+SRSSS+ SR + S+S+ SRSH S S +K
Sbjct: 174 SAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRR 233
Query: 275 SSSSSSPER--NRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
S S +R +R+R +SRS S K++ TR + E + + E ++
Sbjct: 234 RSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDRE 280
Score = 62.0 bits (149), Expect = 7e-10
Identities = 56/203 (27%), Positives = 95/203 (46%), Gaps = 16/203 (7%)
Query: 117 REESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED 176
R +S + R+++K R ++ K+ +K E +E +++D K + E E E
Sbjct: 234 RSKSPHKKRSKSRERRKSRSRSHSRDK-RKDTREKIKE-KERVKEKDREKEREREKEREK 291
Query: 177 DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS-HSRSSSRSSSPSSSRSRSRSRSRSSS 235
+ + K N D +E + +++K + R + R H + + + + R + RS
Sbjct: 292 EKERGK-NKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKE 350
Query: 236 SSQSRSR---SSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSS---SPERNRKRSR 289
+ R + S + RS + +SRSSSR R R+RS SSS S S RK SR
Sbjct: 351 IDEKRKKDKKSRTPPRSYNASRRSRSSSRERR-----RRRSRSSSRSPRTSKTIKRKSSR 405
Query: 290 SRSSSSGDRK-KRRTRSRSPESQ 311
S S S ++K K+R + R S+
Sbjct: 406 SPSPRSRNKKDKKREKERDHISE 428
Score = 61.6 bits (148), Expect = 9e-10
Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 12/190 (6%)
Query: 131 KKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE 190
KK+ + + + DK + E+ ++++ K K E E E + + K + +
Sbjct: 240 KKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEK-ERGKN 298
Query: 191 EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSR 250
+D +K++ R + K + R R R + + + + + + RS + R
Sbjct: 299 KDRDKEREKDREKDKEKD---REREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKR 355
Query: 251 SRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK-RRTRSRSPE 309
+ KSR+ RS+ S R SSS ER R+RSRS S S K +R SRSP
Sbjct: 356 KKDKKSRTPPRSYNASRRSR-------SSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPS 408
Query: 310 SQVIGENTKQ 319
+ + K+
Sbjct: 409 PRSRNKKDKK 418
Score = 57.0 bits (136), Expect = 2e-08
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 6/136 (4%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
+S + S +K+S + RS+ SH+RS SR S+S + RS+S +SRSRS SR
Sbjct: 202 SSSKSHSRRKRSQSKHRSR---SHNRSRSRQKDRRRSKSPHKKRSKSRERRKSRSRSHSR 258
Query: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG---DRKKRRT 303
++ + K + R + ER + + R + D++K R
Sbjct: 259 DKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKEREKDREKDKEKDRE 318
Query: 304 RSRSPESQVIGENTKQ 319
R R E + + K+
Sbjct: 319 REREKEHEKDRDKEKE 334
Score = 51.2 bits (121), Expect = 1e-06
Identities = 31/135 (22%), Positives = 54/135 (40%), Gaps = 13/135 (9%)
Query: 186 DASEEEDSNKKKSNRRSRSKSRS-SHSR-----------SSSRSSSPSSSRSRSRSRSRS 233
D + +KK+S R R KSRS SHSR R + R R + R
Sbjct: 231 DRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKERE 290
Query: 234 SSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSS 293
+ +++ +ER + R K + R K ++ ++R + RS
Sbjct: 291 KEKERGKNKDRDKEREKDR-EKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSK 349
Query: 294 SSGDRKKRRTRSRSP 308
+++K+ +SR+P
Sbjct: 350 EIDEKRKKDKKSRTP 364
>gi|38146107 arginine/serine-rich coiled-coil 2 isoform a [Homo
sapiens]
Length = 434
Score = 90.5 bits (223), Expect = 2e-18
Identities = 77/182 (42%), Positives = 95/182 (52%), Gaps = 31/182 (17%)
Query: 151 KESEGEE-EDEDEDLSKYKLDEDED-EDDADLSKYNLDASEE-EDSNKKKSNRRSRSKSR 207
+ EG E +D+ K+K +E D E +D + L++SE ED +K+K + SR +S
Sbjct: 66 RSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRS- 124
Query: 208 SSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSS 267
HSRS SR R RSRSR R S S+SR R SR RSR R KSRS SR
Sbjct: 125 --HSRSRSRER-----RHRSRSRERKKSRSRSRERKKSRSRSRER-KKSRSRSRE----- 171
Query: 268 SPRKRSYSSSSSSPERNRKRSRSRS---SSSGDRKKR--------RTRSRSPESQVI-GE 315
RKR S S S R+R R+RSRS S S DRKKR R+ SR+P G
Sbjct: 172 --RKRRIRSRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGR 229
Query: 316 NT 317
NT
Sbjct: 230 NT 231
Score = 79.3 bits (194), Expect = 4e-15
Identities = 54/164 (32%), Positives = 73/164 (44%), Gaps = 6/164 (3%)
Query: 150 DKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS 209
DK+ E E SK+ K + + + ++ K RR SK +SS
Sbjct: 21 DKKKEQSEVSVSPRASKHHYSRSRSRSRERKRKSDNEGRKHRSRSRSKEGRRHESKDKSS 80
Query: 210 HSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG-SKSRSSSRSHRGSSS 268
S + S + R R SS + + R + R+ SR R S+SRS R HR S
Sbjct: 81 KKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSRSRERRHRSRSR 140
Query: 269 PRKRSYSSS-----SSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
RK+S S S S S R RK+SRSRS R + R+RSRS
Sbjct: 141 ERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRS 184
Score = 77.0 bits (188), Expect = 2e-14
Identities = 67/210 (31%), Positives = 95/210 (45%), Gaps = 16/210 (7%)
Query: 125 DEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDE---DLSKYKLDEDEDEDDADLS 181
D GRK + G K+ K+ + EE ++ E D + +L+ E+ +D
Sbjct: 55 DNEGRKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKR 114
Query: 182 KYNLDASEEEDSNKKKSNRRSRSKSRS---SHSRSSSRSSSPSSSRSRSRSRSRSSS--- 235
K + S + RR RS+SR S SRS R S S SR R +SRSRS
Sbjct: 115 KERKSSRGRSHSRSRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKR 174
Query: 236 --SSQSRSRSSSRERSRSRGSKSRSSSRSHRGS-SSPRKRSYSSS---SSSPERNRKRSR 289
S+SRSRS R R+RSR S++RS SR + PR+ S S S S P R R +
Sbjct: 175 RIRSRSRSRSRHRHRTRSR-SRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAM 233
Query: 290 SRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
+ R +R + + + + E KQ
Sbjct: 234 DAQEALARRLERAKKLQEQREKEMVEKQKQ 263
Score = 65.1 bits (157), Expect = 8e-11
Identities = 47/153 (30%), Positives = 68/153 (44%), Gaps = 12/153 (7%)
Query: 163 DLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS 222
D + L ++ D D K + SE S + + SRS+SRS R R S
Sbjct: 5 DTERDGLAPEKTSPDRDKKK---EQSEVSVSPRASKHHYSRSRSRS---RERKRKSDNEG 58
Query: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSR------SHRGSSSPRKRSYSS 276
+ RSRSRS+ +S+ +SS + +S K SS + S KR
Sbjct: 59 RKHRSRSRSKEGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERK 118
Query: 277 SSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPE 309
SS +R RSR R S R+++++RSRS E
Sbjct: 119 SSRGRSHSRSRSRERRHRSRSRERKKSRSRSRE 151
>gi|38146113 arginine/serine-rich coiled-coil 2 isoform b [Homo
sapiens]
Length = 375
Score = 90.1 bits (222), Expect = 2e-18
Identities = 75/174 (43%), Positives = 92/174 (52%), Gaps = 30/174 (17%)
Query: 158 EDEDEDLSKYKLDEDED-EDDADLSKYNLDASEE-EDSNKKKSNRRSRSKSRSSHSRSSS 215
E +D+ K+K +E D E +D + L++SE ED +K+K + SR + SHSRS S
Sbjct: 15 ESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGR---SHSRSRS 71
Query: 216 RSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYS 275
R R RSRSR R S S+SR R SR RSR R KSRS SR RKR
Sbjct: 72 R-----ERRHRSRSRERKKSRSRSRERKKSRSRSRER-KKSRSRSRE-------RKRRIR 118
Query: 276 SSSSSPERNRKRSRSRS---SSSGDRKKR--------RTRSRSPESQVI-GENT 317
S S S R+R R+RSRS S S DRKKR R+ SR+P G NT
Sbjct: 119 SRSRSRSRHRHRTRSRSRTRSRSRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNT 172
Score = 72.4 bits (176), Expect = 5e-13
Identities = 47/117 (40%), Positives = 59/117 (50%), Gaps = 6/117 (5%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG-SK 255
K RR SK +SS S + S + R R SS + + R + R+ SR R S+
Sbjct: 9 KQGRRHESKDKSSKKHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSR 68
Query: 256 SRSSSRSHRGSSSPRKRSYSSS-----SSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
SRS R HR S RK+S S S S S R RK+SRSRS R + R+RSRS
Sbjct: 69 SRSRERRHRSRSRERKKSRSRSRERKKSRSRSRERKKSRSRSRERKRRIRSRSRSRS 125
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 87.8 bits (216), Expect = 1e-17
Identities = 69/172 (40%), Positives = 92/172 (53%), Gaps = 8/172 (4%)
Query: 149 EDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS 208
+++ +EG E K LD+ D +++ N+ E++ + S+RRS S SRS
Sbjct: 143 KERTNEGVIEFRSYSDMKRALDK---LDGTEINGRNIRLIEDKP---RTSHRRSYSGSRS 196
Query: 209 SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSS 268
SRS RS S S SRSRSRS S S S+SRSRS R RSRS+G KSRS S+S + S
Sbjct: 197 -RSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRSKSKS-KPKSD 254
Query: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQP 320
S+S S S E + RSRSRS S + K +S+S N+ P
Sbjct: 255 RGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSNSPLP 306
Score = 85.5 bits (210), Expect = 6e-17
Identities = 69/174 (39%), Positives = 89/174 (51%), Gaps = 14/174 (8%)
Query: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS 204
LK+ + E D ++ + + E D + LD +E N R
Sbjct: 126 LKDFMRQAGEVTYADAHKERTNEGVIEFRSYSDMKRALDKLDGTEINGRNI----RLIED 181
Query: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264
K R+SH RS S S S S SR RSRSRSR SS S+SRS S SR RSRSR SK RS SR
Sbjct: 182 KPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSR-SKGRSRSR--- 237
Query: 265 GSSSPRKRSYSSSSSSPERNR---KRSRSRSSSSGDRKKRRTRSRSPESQVIGE 315
S ++S S S S P+ +R SRSRS ++ + R+RSRSP+ G+
Sbjct: 238 ---SKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGD 288
Score = 79.3 bits (194), Expect = 4e-15
Identities = 71/230 (30%), Positives = 97/230 (42%), Gaps = 13/230 (5%)
Query: 83 SECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPA 142
S C+ + + + Y ER N IE Y + R K G +
Sbjct: 119 SRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRS----YSDMKRALDKLDGTEINGR 174
Query: 143 SILKEVEDKESEGEEEDEDEDLSKYKL---DEDEDEDDADLSKYNLDASEEEDSNKKKSN 199
+I + +EDK S+ + + ++ S ++ K
Sbjct: 175 NI-RLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGR 233
Query: 200 RRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSS-SSSQSRSRSSSRERSRSRGSKSRS 258
RSRSK R S S+S S+ S S S SRSRS+ S+SRSRS S + + KS+S
Sbjct: 234 SRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKS 293
Query: 259 SSRSHRGSSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRS 307
SRS S+SP S + S SP R SRSRS S R K R+RSRS
Sbjct: 294 RSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRS---RSKSRSRSRS 340
Score = 58.9 bits (141), Expect = 6e-09
Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 11/123 (8%)
Query: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
R K + R ++ G S K +S+ SK DE + S+ +
Sbjct: 229 RSKGRSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSK-------DEYEKSRSRSRSRSP 281
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSR----SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
+E KS RSRS+SRS+ S +RS SP R+ SRSRSRS S S+SRSRSS
Sbjct: 282 KENGKGDIKSKSRSRSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRSS 341
Query: 245 SRE 247
SR+
Sbjct: 342 SRD 344
Score = 31.2 bits (69), Expect = 1.3
Identities = 53/192 (27%), Positives = 68/192 (35%), Gaps = 51/192 (26%)
Query: 167 YKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSS-SRSSSPSSSRS 225
Y E ED DAD + Y L+ E + R + R +S S S SS R+
Sbjct: 37 YGFVEFEDSRDADDAVYELNGKELCGERVIVEHARGPRRDRDGYSYGSRSGGGGYSSRRT 96
Query: 226 RSRSR-----------------SRSS---------SSSQSRSRSSSRERSRSRGSKSRSS 259
R + SR S + + + +ER+ + RS
Sbjct: 97 SGRDKYGPPVRTEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNEGVIEFRSY 156
Query: 260 SRSHRG-----------------SSSPR---KRSYSSS-SSSPERNRKRSRSRSSS---S 295
S R PR +RSYS S S S R R RSRSR SS S
Sbjct: 157 SDMKRALDKLDGTEINGRNIRLIEDKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRS 216
Query: 296 GDRKKRRTRSRS 307
K R+RSRS
Sbjct: 217 RSISKSRSRSRS 228
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 87.4 bits (215), Expect = 2e-17
Identities = 62/151 (41%), Positives = 76/151 (50%), Gaps = 24/151 (15%)
Query: 180 LSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSR------- 232
+ + + D EE S +KK +RR S S SS SR+ SR SRS+SRS SR
Sbjct: 1 MGRRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSH 60
Query: 233 ----------SSSSSQSRSRSSSRERSRSRG-----SKSRSSSRSHRGSSSPRKRSYSSS 277
SSSSS R SR RSR RG +SRS SR+ R S PR RS+S S
Sbjct: 61 SYDRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSRSRPRLRSHSRS 120
Query: 278 S--SSPERNRKRSRSRSSSSGDRKKRRTRSR 306
S SS R R RSR R G K++R + +
Sbjct: 121 SERSSHRRTRSRSRDRERRKGRDKEKREKEK 151
Score = 62.8 bits (151), Expect = 4e-10
Identities = 42/106 (39%), Positives = 52/106 (49%), Gaps = 1/106 (0%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
RSS + SRS R RS S S S S + SR + + RS+SR RSH
Sbjct: 4 RSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRKSRSKSRSWSRDLQPRSHSYD 63
Query: 267 SSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR-RTRSRSPESQ 311
R RS SSSS R R RSRSR R +R R++SR+ S+
Sbjct: 64 RRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRTRRSR 109
Score = 60.5 bits (145), Expect = 2e-09
Identities = 44/110 (40%), Positives = 57/110 (51%), Gaps = 13/110 (11%)
Query: 212 RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRK 271
R SS + S S+ + + R RSSSSS S SR+ SR++ G KSRS SRS PR
Sbjct: 3 RRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKG---GRKSRSKSRSWSRDLQPRS 59
Query: 272 RSYSSSSSSPERNRKRSRSRSSSSGDRKKR---RTRSRSPESQVIGENTK 318
SY +R R+ S SSS G R+KR R+R R +V +K
Sbjct: 60 HSY-------DRRRRHRSSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSK 102
Score = 56.2 bits (134), Expect = 4e-08
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 117 REESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED 176
R SD E + ++KKK+R ++ +S ++ G + S+ K +
Sbjct: 3 RRSSDTEEESRSKRKKKHRRRSSSSSSSDSRTYSRKKGGRK-------SRSKSRSWSRDL 55
Query: 177 DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSR-SRSSS 235
Y+ S+ +RR RS+SRS R +S SRS+SR+R SRS
Sbjct: 56 QPRSHSYDRRRRHRSSSSSSYGSRRKRSRSRS---RGRGKSYRVQRSRSKSRTRRSRSRP 112
Query: 236 SSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSS 295
+S SRSS R R S+SR R R++ N KR S + +
Sbjct: 113 RLRSHSRSSERSSHRRTRSRSRDRERRKGRDKEKREKEKDKGKDKELHNIKRGESGNIKA 172
Query: 296 G 296
G
Sbjct: 173 G 173
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 87.4 bits (215), Expect = 2e-17
Identities = 61/122 (50%), Positives = 74/122 (60%), Gaps = 10/122 (8%)
Query: 203 RSKSRSSHSRSSS-RSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSR 261
R+K R+ + R+S PS SRSRS+SR RSSS S SRS SS SRSR SRS SR
Sbjct: 718 RAKMRARRRKGQEKRNSGPSRSRSRSKSRGRSSSRSNSRSSKSSGSYSRSR---SRSCSR 774
Query: 262 SHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS---PESQVIGENTK 318
S+ S R RS S S SS R+R +SRSRS S ++RR+RSRS P S +G N+
Sbjct: 775 SY---SRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRRRSRSRSPTPPSSAGLGSNSA 831
Query: 319 QP 320
P
Sbjct: 832 PP 833
Score = 80.9 bits (198), Expect = 1e-15
Identities = 57/108 (52%), Positives = 68/108 (62%), Gaps = 12/108 (11%)
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
E+ +S +S RS+S+ RSS SRS+SRSS SS S SRSRSRS S S SRSRS SR R
Sbjct: 730 EKRNSGPSRSRSRSKSRGRSS-SRSNSRSS--KSSGSYSRSRSRSCSRSYSRSRSRSRSR 786
Query: 249 SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
SRS S+SRS SRS S SP +R R+R RS + SS+G
Sbjct: 787 SRSSRSRSRSQSRSRSKSYSPGRR---------RRSRSRSPTPPSSAG 825
Score = 70.5 bits (171), Expect = 2e-12
Identities = 49/94 (52%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
S+ + +SN RS SKS S+SRS SRS S S SRSRSRSRSRS SS +SRSRS SR
Sbjct: 743 SKSRGRSSSRSNSRS-SKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSS-RSRSRSQSRS 800
Query: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSP 281
RS+S R SRS R + P S+S+ P
Sbjct: 801 RSKSYSPGRRRRSRS-RSPTPPSSAGLGSNSAPP 833
Score = 57.4 bits (137), Expect = 2e-08
Identities = 44/86 (51%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS- 245
+S + K S SRS+SRS SRS SRS S S SRSRS SRSRS S S+SRS+S S
Sbjct: 750 SSRSNSRSSKSSGSYSRSRSRSC-SRSYSRSRSRSRSRSRS-SRSRSRSQSRSRSKSYSP 807
Query: 246 --RERSRSRGSKSRSSSRSHRGSSSP 269
R RSRSR SS+ S+ P
Sbjct: 808 GRRRRSRSRSPTPPSSAGLGSNSAPP 833
Score = 47.4 bits (111), Expect = 2e-05
Identities = 42/139 (30%), Positives = 59/139 (42%), Gaps = 18/139 (12%)
Query: 119 ESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDA 178
E +G Y+ F K + R K ++K + G S+ + + +
Sbjct: 709 EQNGLYEFFRAKMRARRRKG----------QEKRNSGPSRSRSRSKSRGRSSSRSNSRSS 758
Query: 179 DLS-KYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
S Y+ S + +S RSRS+SRSS SRS S+S S S S S R R
Sbjct: 759 KSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRSRSQSRSRSKSYSPGRRR------- 811
Query: 238 QSRSRSSSRERSRSRGSKS 256
+SRSRS + S GS S
Sbjct: 812 RSRSRSPTPPSSAGLGSNS 830
>gi|166235169 PRP38 pre-mRNA processing factor 38 (yeast) domain
containing B [Homo sapiens]
Length = 546
Score = 84.0 bits (206), Expect = 2e-16
Identities = 63/198 (31%), Positives = 103/198 (52%), Gaps = 15/198 (7%)
Query: 116 EREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE 175
+R+ + +E GR++ + K G +KE E E E S+ +++E + +
Sbjct: 351 DRDREREKENERGRRRDRDYDKERG------NEREKERERSRERSKEQRSRGEVEEKKHK 404
Query: 176 DDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS-SRSRSRSRSRSS 234
+D D ++ D + DS K+K + RSRS+ R SRS SR++ S SRS+ +S S
Sbjct: 405 EDKDDRRHRDD---KRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKS---SK 458
Query: 235 SSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSS 294
++S+ +S+ R RS S+G ++ S +S + SP K S S ER+ KR S S
Sbjct: 459 HKNESKEKSNKRSRSGSQG-RTDSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKD 517
Query: 295 SGDR-KKRRTRSRSPESQ 311
D+ +RR++S ESQ
Sbjct: 518 QSDKHDRRRSQSIEQESQ 535
Score = 76.6 bits (187), Expect = 3e-14
Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 4/220 (1%)
Query: 94 AKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKES 153
++ R G+G +RE ER+ + E E R+K++ R +++ + +E
Sbjct: 278 SRSHHREGHGSSSFDRELEREKERQRLEREAKE--REKERRRSRSIDRGLERRRSRSRER 335
Query: 154 E-GEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSR 212
D + D + ++++ + + D +E + ++K RSR +S+ SR
Sbjct: 336 HRSRSRSRDRKGDRRDRDREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQRSR 395
Query: 213 SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
+ R R S + + S SR R R S+SRS + R S +++
Sbjct: 396 GEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEK 455
Query: 273 SYSSSSSSPERNRKRSRSRSSSSGDR-KKRRTRSRSPESQ 311
S + S E++ KRSRS S D +K + R SP +
Sbjct: 456 SSKHKNESKEKSNKRSRSGSQGRTDSVEKSKKREHSPSKE 495
Score = 72.0 bits (175), Expect = 7e-13
Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 108 ERENVEYIER-EESDGEYD-EFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLS 165
+RE + ER D +YD E G +++K R ++ + + + E + +ED+D+
Sbjct: 353 DREREKENERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDD--- 409
Query: 166 KYKLDEDEDEDDADLSKYNLDASEEED----SNKKKSNRRSRSKSRSSHSRSSSRSSSPS 221
+ D+ D K++ S E S + + +RSRS+S+ S+ + S S
Sbjct: 410 --RRHRDDKRDSKKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKS 467
Query: 222 SSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSP 281
+ RSRS S+ R+ S +S+ R S + +SR +SRS RSH+ S S S
Sbjct: 468 NKRSRSGSQGRTDSVEKSKKREHSPSKEKSR-KRSRSKERSHKRDHS------DSKDQSD 520
Query: 282 ERNRKRSRSRSSSSGDRKKR 301
+ +R+RS+S S +++ +
Sbjct: 521 KHDRRRSQSIEQESQEKQHK 540
Score = 63.5 bits (153), Expect = 2e-10
Identities = 51/207 (24%), Positives = 85/207 (41%), Gaps = 17/207 (8%)
Query: 114 YIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDE 173
++ER S ++ R ++ S +E S E + +++ + + + E
Sbjct: 254 HVERRRSRSPRRSLSPRRSPRRSRS---RSHHREGHGSSSFDRELEREKERQRLEREAKE 310
Query: 174 DEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS----HSRSSSRSSSPSSSRSRSRS 229
E + S+ ++D E ++ + RSRS+SR R R R R R
Sbjct: 311 REKERRRSR-SIDRGLERRRSRSRERHRSRSRSRDRKGDRRDRDREREKENERGRRRDRD 369
Query: 230 RSRSSSSSQSRSRSSSRERS---RSRGS------KSRSSSRSHRGSSSPRKRSYSSSSSS 280
+ + + + R SRERS RSRG K R HR K+ S S
Sbjct: 370 YDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDSKKEKKHSRSR 429
Query: 281 PERNRKRSRSRSSSSGDRKKRRTRSRS 307
+ RSRSRS ++G R + R++ +S
Sbjct: 430 SRERKHRSRSRSRNAGKRSRSRSKEKS 456
Score = 57.8 bits (138), Expect = 1e-08
Identities = 51/168 (30%), Positives = 72/168 (42%), Gaps = 29/168 (17%)
Query: 168 KLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS-SHSRSSSRSSS------- 219
K+ +D E ++ ++ ++ + S RRS +SRS SH R SSS
Sbjct: 239 KIKKDGKEGAEEIDRH-VERRRSRSPRRSLSPRRSPRRSRSRSHHREGHGSSSFDRELER 297
Query: 220 ---------PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+ R + R RSRS R RS SRER R SRS SR +G R
Sbjct: 298 EKERQRLEREAKEREKERRRSRSIDRGLERRRSRSRERHR-----SRSRSRDRKGDRRDR 352
Query: 271 KRSYSSSSSSPERNRKRSRSRSSSSG---DRKKRRTRSRSPESQVIGE 315
R + ER R+R R G ++++ R+R RS E + GE
Sbjct: 353 DREREKEN---ERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGE 397
Score = 45.8 bits (107), Expect = 5e-05
Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 2/110 (1%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKS 256
+ N + K+R + + + R R RSRS S S RS R RSRS +
Sbjct: 226 QKNIDQQIKTRPRKIKKDGKEGAEEIDRHVERRRSRSPRRSLSPRRSPRRSRSRSHHREG 285
Query: 257 RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
SS R ++R + ER ++R RSRS G ++RR+RSR
Sbjct: 286 HGSSSFDRELEREKERQ-RLEREAKEREKERRRSRSIDRG-LERRRSRSR 333
Score = 35.0 bits (79), Expect = 0.089
Identities = 38/183 (20%), Positives = 68/183 (37%), Gaps = 37/183 (20%)
Query: 107 NERENVEYIEREESDGEYDEFGRKKKKYRGK---AVGPASILKEVEDKESEGEEEDEDED 163
NER + ++ G E R++ + R K + G K EDK+ +D+ +
Sbjct: 360 NERGRRRDRDYDKERGNEREKERERSRERSKEQRSRGEVEEKKHKEDKDDRRHRDDKRDS 419
Query: 164 LSKYKLDEDEDED-------------DADLSKYNLDASEEEDSNKKKSNRRSRSKSRS-- 208
+ K + S+ +S+ ++ +K+KSN+RSRS S+
Sbjct: 420 KKEKKHSRSRSRERKHRSRSRSRNAGKRSRSRSKEKSSKHKNESKEKSNKRSRSGSQGRT 479
Query: 209 -------------------SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS 249
SRS RS S S+ +S SQS + S ++
Sbjct: 480 DSVEKSKKREHSPSKEKSRKRSRSKERSHKRDHSDSKDQSDKHDRRRSQSIEQESQEKQH 539
Query: 250 RSR 252
+++
Sbjct: 540 KNK 542
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 82.0 bits (201), Expect = 6e-16
Identities = 65/175 (37%), Positives = 83/175 (47%), Gaps = 12/175 (6%)
Query: 146 KEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS- 204
KE S ++ D S E +K D S NK + RSRS
Sbjct: 361 KERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQR-DHSRSRSPNKARDRSRSRSP 419
Query: 205 -------KSRSSH-SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKS 256
+SRS + +R SRS SP +R RSRSRS + + SRSRS ++ R RSR S+S
Sbjct: 420 YKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSR-SRS 478
Query: 257 RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQ 311
S R H SP K S SP + R+ +SRSSS +R RR+RS S E Q
Sbjct: 479 PSKERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSK-ERDHRRSRSPSKERQ 532
Score = 80.9 bits (198), Expect = 1e-15
Identities = 76/242 (31%), Positives = 101/242 (41%), Gaps = 46/242 (19%)
Query: 90 TPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVE 149
TP AK + TG +E+SD RK K Y G+ + P+
Sbjct: 213 TPSTAKCQTPTGIPS------------KEKSDNPSPSSSRKVKSY-GQMIIPS------- 252
Query: 150 DKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS 209
+E + + Y + + S + S RS S R+
Sbjct: 253 -REKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKRTHSRVRSHSWKRN- 310
Query: 210 HSRSSSRSS----SPSSSRSRSRSRSRSSSSSQSR----------SRSSSRERSRSRGSK 255
HSR+ SR+ S S+SRS S+ S +QSR SR+ S+ERS S S+
Sbjct: 311 HSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSH-SR 369
Query: 256 SRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR---------RTRSR 306
S S R HRGSSSPRK S S S SP + R SRSRS + + R R+RSR
Sbjct: 370 SSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSR 429
Query: 307 SP 308
SP
Sbjct: 430 SP 431
Score = 80.9 bits (198), Expect = 1e-15
Identities = 71/214 (33%), Positives = 97/214 (45%), Gaps = 30/214 (14%)
Query: 118 EESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDD 177
+E + K++ +RG S E S+ ++ D S+ + +
Sbjct: 361 KERSHSHSRSSSKERDHRG------SSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRS 414
Query: 178 ADLSKYNL-DASEEEDSNKKKSNRRSRS--------KSRSSH-SRSSSRSSSPSSSRSRS 227
S Y D S NK + RSRS +SRS + +R SRS SP+ +R RS
Sbjct: 415 RSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRS 474
Query: 228 RSRSRSSSSSQS------------RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYS 275
RSRS S S RSRS S+ER + R S+S S R HR S SP K
Sbjct: 475 RSRSPSKERDHSQLGSPSKERDHRRSRSPSKER-QCRQSRSSSKERDHRRSRSPSKERQR 533
Query: 276 SSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPE 309
S SP + R RS+SRS S +R+ R++RS S E
Sbjct: 534 RQSRSPNKERDRSQSRSPSE-EREHRQSRSPSKE 566
Score = 77.8 bits (190), Expect = 1e-14
Identities = 68/235 (28%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 78 NWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGK 137
NW+R ++ + +ER G +E+ + R K R +
Sbjct: 354 NWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDR 413
Query: 138 AVGPASI-LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKK 196
+ + ++ S + D S YK + + ++ D S NK
Sbjct: 414 SRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDRSRSRSPNKAR---DHSRSRSPNKA 470
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKS 256
+ RSRS S+ R S+ SPS R RSRS S +SRSSS+ER R S+S
Sbjct: 471 RDRSRSRSPSKE---RDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKERDHRR-SRS 526
Query: 257 RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQ 311
S R R S SP K S S SP R+ +SRS S +R +RR RS S E +
Sbjct: 527 PSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSK-ERDRRRWRSPSKERE 580
Score = 75.9 bits (185), Expect = 5e-14
Identities = 53/128 (41%), Positives = 71/128 (55%), Gaps = 11/128 (8%)
Query: 186 DASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSR--SRS 243
D S+ +K++ +RRSRS S+ R S SSS+ R RSRS S + R SRS
Sbjct: 484 DHSQLGSPSKERDHRRSRSPSKERQCRQSR-----SSSKERDHRRSRSPSKERQRRQSRS 538
Query: 244 SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRT 303
++ER RS+ S+S S R HR S SP K SP + R+R +SRSSS ++ +
Sbjct: 539 PNKERDRSQ-SRSPSEEREHRQSRSPSKERDRRRWRSPSKERERRQSRSSS---EERDHS 594
Query: 304 RSRSPESQ 311
RSRSP Q
Sbjct: 595 RSRSPNKQ 602
Score = 73.2 bits (178), Expect = 3e-13
Identities = 77/248 (31%), Positives = 100/248 (40%), Gaps = 65/248 (26%)
Query: 117 REESDGEYDEFGRKKKKYR---GKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDE 173
RE SD + KK YR G +G +S E+ S + + SK K D
Sbjct: 181 RERSDSQPRNLS--KKSYRPPGGSGIGRSS---ELAVTPSTAKCQTPTGIPSKEKSDNPS 235
Query: 174 DEDDADLSKYN---LDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSR---- 226
+ Y + + E+ S + S+R S+ SR S S S S RSR
Sbjct: 236 PSSSRKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQ 295
Query: 227 ------------------------------------SRSRSRSSSSSQSR---------- 240
SRS S+ S +QSR
Sbjct: 296 KRTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTPRRGRSHNW 355
Query: 241 SRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
SR+ S+ERS S S+S S R HRGSSSPRK S S S SP + R SRSRS ++ +
Sbjct: 356 SRNPSKERSHSH-SRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSP---NKAR 411
Query: 301 RRTRSRSP 308
R+RSRSP
Sbjct: 412 DRSRSRSP 419
Score = 72.8 bits (177), Expect = 4e-13
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 11/136 (8%)
Query: 194 NKKKSNRRSRSKSRSSHSRSSS---------RSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
+K++S+ SRS S+ R SS +S SP+ R SRSRS + + +SRSRS
Sbjct: 360 SKERSHSHSRSSSKERDHRGSSSPRKESGRSQSGSPNKQRDHSRSRSPNKARDRSRSRSP 419
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-SSSGDRKKRRT 303
+ R RSR S+S + +R S SP K S S SP + R SRSRS + + DR + R+
Sbjct: 420 YKARDRSR-SRSPNKARDCSRSRSPYKARDRSRSRSPNKARDHSRSRSPNKARDRSRSRS 478
Query: 304 RSRSPESQVIGENTKQ 319
S+ + +G +K+
Sbjct: 479 PSKERDHSQLGSPSKE 494
Score = 69.3 bits (168), Expect = 4e-12
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 13/183 (7%)
Query: 146 KEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSK 205
KE + ++S ++ D S+ E + +K D S+ ++++ +R+SRS
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKER-DRSQSRSPSEEREHRQSRSP 563
Query: 206 SRS---------SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKS 256
S+ S R +S S S R SRSRS + S SR R+SS+E++ SR S++
Sbjct: 564 SKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSR-SRT 622
Query: 257 RSSSRSHRGSSSPRKRSYSSSSSSPER-NRKRSRSRSSS-SGDRKKRRTRSRSPESQVIG 314
S +H S + K S S S+ P + KRS +R+SS S +R +T S SP + G
Sbjct: 623 PSKEGNHSQSRTSSKESDPSQSTVPRSPDWKRSPTRTSSLSQNRTPSKTSSHSPSTFPSG 682
Query: 315 ENT 317
T
Sbjct: 683 GQT 685
Score = 64.3 bits (155), Expect = 1e-10
Identities = 56/153 (36%), Positives = 73/153 (47%), Gaps = 29/153 (18%)
Query: 188 SEEEDSNKKKSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRSRSR----------SSSS 236
S+ +K KS +SR+ R SH+ S + S S S SRS S+ R S
Sbjct: 330 SQSRSHSKGKSQNQSRTPRRGRSHNWSRNPSKERSHSHSRSSSKERDHRGSSSPRKESGR 389
Query: 237 SQSRSRSSSRERSRSRG-------SKSRS--SSRSHRGSSSPRKRSYSSSSSSPERNRKR 287
SQS S + R+ SRSR S+SRS +R S SP K S S SP + R R
Sbjct: 390 SQSGSPNKQRDHSRSRSPNKARDRSRSRSPYKARDRSRSRSPNKARDCSRSRSPYKARDR 449
Query: 288 SRSRS---------SSSGDRKKRRTRSRSPESQ 311
SRSRS S S ++ + R+RSRSP +
Sbjct: 450 SRSRSPNKARDHSRSRSPNKARDRSRSRSPSKE 482
Score = 62.8 bits (151), Expect = 4e-10
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 15/183 (8%)
Query: 131 KKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE 190
K + R ++ P+ KE + + ++ D S+ E + SK D
Sbjct: 469 KARDRSRSRSPS---KERDHSQLGSPSKERDHRRSRSPSKERQCRQSRSSSKER-DHRRS 524
Query: 191 EDSNKKKSNRRSRSKSRS---SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
+K++ R+SRS ++ S SRS S SRS S+ R R R RS S+E
Sbjct: 525 RSPSKERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDR------RRWRSPSKE 578
Query: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-SSSGDRKKRRTRSR 306
R R R S+S S R H S SP K+S S + + + SRSR+ S G+ + RT S+
Sbjct: 579 RER-RQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSK 637
Query: 307 SPE 309
+
Sbjct: 638 ESD 640
Score = 47.8 bits (112), Expect = 1e-05
Identities = 52/179 (29%), Positives = 82/179 (45%), Gaps = 36/179 (20%)
Query: 116 EREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE 175
ERE R ++++R + KE E ++S E+ D S+ +
Sbjct: 554 EREHRQSRSPSKERDRRRWRSPS-------KERERRQSRSSSEERDHSRSRSPNKQ---- 602
Query: 176 DDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS---SHSRSSSRSSSPSSS---RSRSRS 229
S Y S S+K+K++ RSR+ S+ S SR+SS+ S PS S RS
Sbjct: 603 -----SGY----SRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDPSQSTVPRSPDWK 653
Query: 230 RSRSSSSSQSRSRSSSRERSRS-----RGSKSRSSSRSHRGSSS-----PRKRSYSSSS 278
RS + +SS S++R+ S+ S S G ++ S S +++ P +RS SSSS
Sbjct: 654 RSPTRTSSLSQNRTPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKATLPGERSSSSSS 712
Score = 47.0 bits (110), Expect = 2e-05
Identities = 45/142 (31%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 193 SNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRS--------------RSRSRSRSSSSSQ 238
S K + RS ++ + SR+S S PSSS+S SRSR RS + +
Sbjct: 34 STKSATPNRSLVPTKPATSRNSVMS--PSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTP 91
Query: 239 SRSRSSSRERSRSRGSKSRSSSR--SHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
SR + +R S+ S R R +H +P +R SS SP R R R + G
Sbjct: 92 SRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIR--THG 149
Query: 297 DRKKRRTRSRSPESQVIGENTK 318
R +R R+P SQ G K
Sbjct: 150 ARPGMASRVRTPTSQQKGSRGK 171
Score = 45.8 bits (107), Expect = 5e-05
Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 8/148 (5%)
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR-SRSRSSSSSQS 239
S+ ++ + S K S +R+ S SS SR S++ +PS + +R S++ +S +
Sbjct: 52 SRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRC 111
Query: 240 RSRSSSRERSRSRGSK-SRSSSRSHRGSSSP-RKRSYSSSSSSPERNRKRSRSRSSSSG- 296
R + R R+ G + SRSS RS +S+P R R++ + R R + + S G
Sbjct: 112 HQRRGTHSRGRTPGRRGSRSSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGK 171
Query: 297 ----DRKKRRTRSRSPESQVIGENTKQP 320
R R RS S + ++ + P
Sbjct: 172 SYGRPRTSNRERSDSQPRNLSKKSYRPP 199
Score = 45.4 bits (106), Expect = 7e-05
Identities = 42/146 (28%), Positives = 67/146 (45%), Gaps = 19/146 (13%)
Query: 187 ASEEEDSNKKKSNRRSRSKSR-----SSHSRSSSRSSSP---------SSSRSRSRSRSR 232
+++ SN+ S R RSK+R S+ +R+S S + + SR R+ R
Sbjct: 69 STKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRGRTPGRRG 128
Query: 233 SSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS 292
S SS +S SR+S+ R R+ G++ +SR +P + S S R R +R RS
Sbjct: 129 SRSSKRSPSRASTPGRIRTHGARPGMASRVR----TPTSQQKGSRGKSYGRPRTSNRERS 184
Query: 293 SSSGDRKKRRTRSRSPESQVIGENTK 318
S R + R P IG +++
Sbjct: 185 DSQ-PRNLSKKSYRPPGGSGIGRSSE 209
Score = 43.1 bits (100), Expect = 3e-04
Identities = 52/171 (30%), Positives = 76/171 (44%), Gaps = 49/171 (28%)
Query: 184 NLDASEEEDSNKKKSNRRSRSKS---RSSH-----------------SRSSSRSSSPSSS 223
N + S+ + N K + R S RSS S+ S + SPSSS
Sbjct: 180 NRERSDSQPRNLSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSS 239
Query: 224 R-----------SRSRSRSRSSSSSQSRSRSSSRERSRSRG-SKSRSSSRSHRGSSSPRK 271
R SR +S S + SS+ +S + + RSR + S+SRS RS GS +K
Sbjct: 240 RKVKSYGQMIIPSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGS---QK 296
Query: 272 RSYSS-SSSSPERNRKRSRSRS-------------SSSGDRKKRRTRSRSP 308
R++S S S +RN R+RSR+ S S + K + +SR+P
Sbjct: 297 RTHSRVRSHSWKRNHSRARSRTRKGILSQMGRHSQSRSHSKGKSQNQSRTP 347
Score = 41.6 bits (96), Expect = 0.001
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 7/123 (5%)
Query: 193 SNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRS-RSRSRSRS-SSSSQSRSRSSSRERSR 250
S+ K+S++ S S + S S ++ P+S +S +S + +RS + + SR+S S
Sbjct: 2 SSPKRSSKPSMSLAPSGSSMPTADPKPPASLKSTKSATPNRSLVPTKPATSRNSVMSPSS 61
Query: 251 SRGSKSRSSSR--SHRGSSSPRKRSYS---SSSSSPERNRKRSRSRSSSSGDRKKRRTRS 305
S+ +KS S+ R S+R SS R RS + S S+ R K S++ R+ +R
Sbjct: 62 SKSTKSTSTKRAPSNRPSSRSRVRSKARTPSRVSTDTRTSKASKASDVRCHQRRGTHSRG 121
Query: 306 RSP 308
R+P
Sbjct: 122 RTP 124
Score = 39.3 bits (90), Expect = 0.005
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH--- 263
+S+ S + +RS P+ + S SSS ++S S+ R S S+SR S++
Sbjct: 33 KSTKSATPNRSLVPTKPATSRNSVMSPSSSKSTKSTSTKRAPSNRPSSRSRVRSKARTPS 92
Query: 264 RGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
R S+ R S +S R+ + SR + G R+ R+ RSP
Sbjct: 93 RVSTDTRTSKASKASDVRCHQRRGTHSRGRTPG-RRGSRSSKRSP 136
Score = 33.9 bits (76), Expect = 0.20
Identities = 38/167 (22%), Positives = 65/167 (38%), Gaps = 41/167 (24%)
Query: 193 SNKKKSNRRS---RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS 249
S+K+ +R S R ++ + +SR +P+S + SR +S + +R RS S+ R+
Sbjct: 131 SSKRSPSRASTPGRIRTHGARPGMASRVRTPTSQQKGSRGKSYGRPRTSNRERSDSQPRN 190
Query: 250 RSR------------------------------GSKSRSSSRSHRGSSSPRKRSYS---- 275
S+ G S+ S + SSS + +SY
Sbjct: 191 LSKKSYRPPGGSGIGRSSELAVTPSTAKCQTPTGIPSKEKSDNPSPSSSRKVKSYGQMII 250
Query: 276 ---SSSSSPERNRKRSRS-RSSSSGDRKKRRTRSRSPESQVIGENTK 318
S SP R +S +S+ R + ++SRSP G +
Sbjct: 251 PSREKSYSPTEMSSRVKSYNQASTRSRPQSHSQSRSPRRSRSGSQKR 297
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 81.6 bits (200), Expect = 8e-16
Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 42/187 (22%)
Query: 166 KYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKS---RSSHSRSSSRSSSPSS 222
K +L ED+ S Y+ S ++ + +R+SRS+S +SSHS+S SRS S S
Sbjct: 169 KIRLVEDKPGSRRRRS-YSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSR 227
Query: 223 SRSRSRSRSRSSS-SSQSRSRSSSRERSRSRG---------------------------- 253
SRS+SRSRS+S S S + +SRS S+E+SRSR
Sbjct: 228 SRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPK 287
Query: 254 --------SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-SSSGDRKKRRTR 304
SKS+S SRS KR S S E++ ++SRSRS S G R + R+R
Sbjct: 288 SRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSR 347
Query: 305 SRSPESQ 311
S+S + +
Sbjct: 348 SKSKDKR 354
Score = 81.3 bits (199), Expect = 1e-15
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 11/193 (5%)
Query: 129 RKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDAS 188
R + K R ++ + KE S+ + K + + ++ + N+
Sbjct: 227 RSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKP 286
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
+ ++ KS +SRS+S+ R S SR RS+ +S S S+SRS+ SR R
Sbjct: 287 KSRSPSRHKSKSKSRSRSQERRVEEEKRGSV---SRGRSQEKSLRQSRSRSRSKGGSRSR 343
Query: 249 SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKR------R 302
SRSR SKS+ R R S RS S S S ER+RKR R S +G KK+ R
Sbjct: 344 SRSR-SKSKDK-RKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDR 401
Query: 303 TRSRSPESQVIGE 315
++SRSP V E
Sbjct: 402 SQSRSPSRSVSKE 414
Score = 79.7 bits (195), Expect = 3e-15
Identities = 56/125 (44%), Positives = 75/125 (60%), Gaps = 7/125 (5%)
Query: 194 NKKKSNRRSRSKSRSSH-SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSR 252
++ +S+ RSRS+SR S SRS S SS S S+SRSRSRS S S S+SRSRS SR RS+
Sbjct: 186 SRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKE 245
Query: 253 GSKS----RSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-SSSGDRKKRRTRSRS 307
S+S +S SRSH S R +S + + N + +S S S + K ++RSRS
Sbjct: 246 KSRSPSKEKSRSRSHSAGKS-RSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRS 304
Query: 308 PESQV 312
E +V
Sbjct: 305 QERRV 309
Score = 76.3 bits (186), Expect = 3e-14
Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 11/132 (8%)
Query: 185 LDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
LD +E + + S+ R S+SRS S S S S SR +SRSRS SS S S+S
Sbjct: 160 LDGTEVNGRKIRLVEDKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSR 219
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
SR RS GS+SRS SRS S R RS S SP + + RSRS S+ K R++
Sbjct: 220 SRSRS---GSRSRSKSRSR---SQSRSRSKKEKSRSPSKEKSRSRSHSAG-----KSRSK 268
Query: 305 SRSPESQVIGEN 316
S+ + I N
Sbjct: 269 SKDQAEEKIQNN 280
Score = 74.3 bits (181), Expect = 1e-13
Identities = 57/183 (31%), Positives = 83/183 (45%), Gaps = 9/183 (4%)
Query: 131 KKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEE 190
K+K R ++ + +D+ E + +++ K + S+ EE
Sbjct: 252 KEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEE 311
Query: 191 EDSNKKKSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS 249
E K+ S R RS+ +S SRS SRS S SRSRSRS+S+ + RSR SR RS
Sbjct: 312 E---KRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRS 368
Query: 250 RSRGSKSRSSSR-----SHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
RSR RS R S GSS +K+ + S S +R S+ R + + +R R
Sbjct: 369 RSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGR 428
Query: 305 SRS 307
S
Sbjct: 429 GES 431
Score = 73.6 bits (179), Expect = 2e-13
Identities = 75/250 (30%), Positives = 106/250 (42%), Gaps = 56/250 (22%)
Query: 107 NERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSK 166
+++E +E+S G+ + K + +A V +S + + S+
Sbjct: 242 SKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSR 301
Query: 167 YKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH-SRSSSRSSSPSSSRS 225
+ E E++ S +++KS R+SRS+SRS SRS SRS S S +
Sbjct: 302 SRSQERRVEEEKR-------GSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKR 354
Query: 226 RSRSRSRSSSSSQSRSRSSSRERSRSRGSK------------------------------ 255
+ R RSR S S+SRSRS S ERSR RGSK
Sbjct: 355 KGRKRSREESRSRSRSRSKS-ERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSK 413
Query: 256 ------SRSSSRSHRGSSS-------PRKRSYSSSSSSPE-RNRKRSRSRSSS---SGDR 298
S SS R RG S R RS S+S S P + RSRS+S+S S +
Sbjct: 414 EREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKTRSRSK 473
Query: 299 KKRRTRSRSP 308
+ R+ SRSP
Sbjct: 474 SRSRSASRSP 483
Score = 72.0 bits (175), Expect = 7e-13
Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 8/154 (5%)
Query: 117 REESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED 176
R S + GRK+ + ++ + + E G + D SK K ED D
Sbjct: 345 RSRSKSKDKRKGRKRSREESRSRSRSR--SKSERSRKRGSKRDSKAGSSKKKKKEDTDRS 402
Query: 177 DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSR----SRSRSR 232
+ ++ + E E + + S R R +S ++ + +RS S S+S+S+ S SRSR
Sbjct: 403 QSRSPSRSV-SKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSR 461
Query: 233 SSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
S S+S++RSRS SR RS SR S SRS SRSH S
Sbjct: 462 SKSASKTRSRSKSRSRSASR-SPSRSRSRSHSRS 494
>gi|86991440 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/118 (53%), Positives = 74/118 (62%), Gaps = 17/118 (14%)
Query: 190 EEDSNKKKSNRRSR---SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
E+ S K+ + R+ + R S SRS SRS + SSSRSRSRSRSRS +S SRS SR
Sbjct: 162 EKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSR---KSYSRSRSR 218
Query: 247 ERSRSRGSKSRSSSRS-------HRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGD 297
RSRSR SKSRS SRS RGSSS RS S +S +R+R RSRSRS SG+
Sbjct: 219 SRSRSR-SKSRSVSRSPVPEKSQKRGSSS---RSKSPASVDRQRSRSRSRSRSVDSGN 272
Score = 73.6 bits (179), Expect = 2e-13
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 9/92 (9%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278
S SRSRSRSRSR+ SSS+SRSRS RSRSR S SRS SRS R S + RS S S
Sbjct: 180 SKRHSRSRSRSRSRTRSSSRSRSRS----RSRSRKSYSRSRSRS-RSRSRSKSRSV-SRS 233
Query: 279 SSPERNRKR---SRSRSSSSGDRKKRRTRSRS 307
PE+++KR SRS+S +S DR++ R+RSRS
Sbjct: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/78 (48%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS--------RSSSS--- 236
S + +S RSRS+SR S+SRS SRS S S S+SRS SRS R SSS
Sbjct: 190 SRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSK 249
Query: 237 ---SQSRSRSSSRERSRS 251
S R RS SR RSRS
Sbjct: 250 SPASVDRQRSRSRSRSRS 267
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 235 SSSQSRSRSSSRERSRSRGSKSRSSSRSH-RGSSSPRKRSYSSSSSSPERNRKRSRSRSS 293
S + R R S+SRS SRS R SS R RS S S S R+R RSRSRS
Sbjct: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS- 223
Query: 294 SSGDRKKRRTRSRSP---ESQVIGENTK 318
R K R+ SRSP +SQ G +++
Sbjct: 224 ----RSKSRSVSRSPVPEKSQKRGSSSR 247
Score = 45.1 bits (105), Expect = 9e-05
Identities = 61/224 (27%), Positives = 83/224 (37%), Gaps = 54/224 (24%)
Query: 139 VGPASILKEVEDKESEGEEEDEDEDLSK-YKLDEDEDEDDADLSKYNLDASEEEDSNKKK 197
+ PA+ K+VE + +G D DL + + E ED DAD + Y LD E
Sbjct: 11 LNPAAREKDVE-RFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTI 69
Query: 198 SNRRSRSKSRSSHSRSSSRSSS--PSSSRS-----RSRSRSRSSSSSQSRSRSSSRERSR 250
+ R+RS+ R S R SS P + R R+ +R + S S ++ R
Sbjct: 70 EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
Query: 251 SRGSKS------------------------------------------RSSSRSHRGSSS 268
G + S R R S
Sbjct: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
Query: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQV 312
R R+ SSS S R+R RSRSR S S R + R+RSRS V
Sbjct: 190 SRSRTRSSSRS---RSRSRSRSRKSYSRSRSRSRSRSRSKSRSV 230
>gi|86991438 splicing factor, arginine/serine-rich 5 [Homo sapiens]
Length = 272
Score = 79.3 bits (194), Expect = 4e-15
Identities = 63/118 (53%), Positives = 74/118 (62%), Gaps = 17/118 (14%)
Query: 190 EEDSNKKKSNRRSR---SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
E+ S K+ + R+ + R S SRS SRS + SSSRSRSRSRSRS +S SRS SR
Sbjct: 162 EKLSGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSR---KSYSRSRSR 218
Query: 247 ERSRSRGSKSRSSSRS-------HRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGD 297
RSRSR SKSRS SRS RGSSS RS S +S +R+R RSRSRS SG+
Sbjct: 219 SRSRSR-SKSRSVSRSPVPEKSQKRGSSS---RSKSPASVDRQRSRSRSRSRSVDSGN 272
Score = 73.6 bits (179), Expect = 2e-13
Identities = 53/92 (57%), Positives = 64/92 (69%), Gaps = 9/92 (9%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSS 278
S SRSRSRSRSR+ SSS+SRSRS RSRSR S SRS SRS R S + RS S S
Sbjct: 180 SKRHSRSRSRSRSRTRSSSRSRSRS----RSRSRKSYSRSRSRS-RSRSRSKSRSV-SRS 233
Query: 279 SSPERNRKR---SRSRSSSSGDRKKRRTRSRS 307
PE+++KR SRS+S +S DR++ R+RSRS
Sbjct: 234 PVPEKSQKRGSSSRSKSPASVDRQRSRSRSRS 265
Score = 52.4 bits (124), Expect = 5e-07
Identities = 38/78 (48%), Positives = 43/78 (55%), Gaps = 14/78 (17%)
Query: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS--------RSSSS--- 236
S + +S RSRS+SR S+SRS SRS S S S+SRS SRS R SSS
Sbjct: 190 SRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRSK 249
Query: 237 ---SQSRSRSSSRERSRS 251
S R RS SR RSRS
Sbjct: 250 SPASVDRQRSRSRSRSRS 267
Score = 46.2 bits (108), Expect = 4e-05
Identities = 37/88 (42%), Positives = 45/88 (51%), Gaps = 9/88 (10%)
Query: 235 SSSQSRSRSSSRERSRSRGSKSRSSSRSH-RGSSSPRKRSYSSSSSSPERNRKRSRSRSS 293
S + R R S+SRS SRS R SS R RS S S S R+R RSRSRS
Sbjct: 165 SGKEINGRKIKLIEGSKRHSRSRSRSRSRTRSSSRSRSRSRSRSRKSYSRSRSRSRSRS- 223
Query: 294 SSGDRKKRRTRSRSP---ESQVIGENTK 318
R K R+ SRSP +SQ G +++
Sbjct: 224 ----RSKSRSVSRSPVPEKSQKRGSSSR 247
Score = 45.1 bits (105), Expect = 9e-05
Identities = 61/224 (27%), Positives = 83/224 (37%), Gaps = 54/224 (24%)
Query: 139 VGPASILKEVEDKESEGEEEDEDEDLSK-YKLDEDEDEDDADLSKYNLDASEEEDSNKKK 197
+ PA+ K+VE + +G D DL + + E ED DAD + Y LD E
Sbjct: 11 LNPAAREKDVE-RFFKGYGRIRDIDLKRGFGFVEFEDPRDADDAVYELDGKELCSERVTI 69
Query: 198 SNRRSRSKSRSSHSRSSSRSSS--PSSSRS-----RSRSRSRSSSSSQSRSRSSSRERSR 250
+ R+RS+ R S R SS P + R R+ +R + S S ++ R
Sbjct: 70 EHARARSRGGRGRGRYSDRFSSRRPRNDRRNAPPVRTENRLIVENLSSRVSWQDLKDFMR 129
Query: 251 SRGSKS------------------------------------------RSSSRSHRGSSS 268
G + S R R S
Sbjct: 130 QAGEVTFADAHRPKLNEGVVEFASYGDLKNAIEKLSGKEINGRKIKLIEGSKRHSRSRSR 189
Query: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQV 312
R R+ SSS S R+R RSRSR S S R + R+RSRS V
Sbjct: 190 SRSRTRSSSRS---RSRSRSRSRKSYSRSRSRSRSRSRSKSRSV 230
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 79.3 bits (194), Expect = 4e-15
Identities = 72/175 (41%), Positives = 81/175 (46%), Gaps = 48/175 (27%)
Query: 194 NKKKSNRRSRSKSRSSHSR-SSSRSSSPSSSRSR-----------SRSRSRSSSSSQSRS 241
N R S S S SS SR SSSRSSS SSSRSR +RSRSRS S S+SRS
Sbjct: 370 NASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRS 429
Query: 242 RSSSRERSRSR-----------------------GSKSRSSSRSHRGSSSPR-------- 270
R SR RSR R G + RS SRSH G R
Sbjct: 430 RRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHH 489
Query: 271 --KRSYSSSSSSPERNRKRSRSRS---SSSGDRKKRRTRSRSPESQVIGENTKQP 320
RS SS S SP R+R +RSRS S S R + R+RS+SP E +P
Sbjct: 490 SSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRP 544
Score = 75.5 bits (184), Expect = 6e-14
Identities = 60/120 (50%), Positives = 69/120 (57%), Gaps = 15/120 (12%)
Query: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS-----RSSSSSQSRSRSSSRERSR 250
+ ++ R RS S SS S +S SSS SSSRS SRSR RS ++SRSRS SR RSR
Sbjct: 369 RNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSR 428
Query: 251 SRG-SKSRSSSRSHRGSSSPRKRSYSSSSSSPERN-----RKRSRSRSSSSGDRKKRRTR 304
SR S+SRS R H G S Y S SP R R+RSRSR S SGDR +R R
Sbjct: 429 SRRYSRSRSRGRRHSGGGSRDGHRY---SRSPARRGGYGPRRRSRSR-SHSGDRYRRGGR 484
Score = 65.5 bits (158), Expect = 6e-11
Identities = 73/243 (30%), Positives = 101/243 (41%), Gaps = 44/243 (18%)
Query: 92 KYAKL--EERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVE 149
K+AK EE+ Y G + R+ E+ ++K+ RG+ + P S +
Sbjct: 250 KHAKALEEEKAMYSGRRSRRQRREF---------------REKRLRGRKISPPSYARRDS 294
Query: 150 D-----KESEGEEEDEDEDLSKYKLDEDEDE----------DDADLSKYNLDASEEEDSN 194
K S E E S+ E++ D+ + A+ +
Sbjct: 295 PTYDPYKRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTG 354
Query: 195 KKKS---------NRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
K + R + ++ RSS S SSS +S SSSRS SRS SRS RS
Sbjct: 355 KPPAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGG-GYYRSGR 413
Query: 246 RERSRSRGSKSRSSSRSHRGS-SSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTR 304
RSRSR S SRS SRS R S S R R +S S RS +R G R++ R+R
Sbjct: 414 HARSRSR-SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSR 472
Query: 305 SRS 307
S S
Sbjct: 473 SHS 475
Score = 59.3 bits (142), Expect = 4e-09
Identities = 56/155 (36%), Positives = 65/155 (41%), Gaps = 40/155 (25%)
Query: 197 KSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRS--------------------------RS 229
+S R +RS+SRS S SRS SR S S SR R RS
Sbjct: 410 RSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRS 469
Query: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYS-----SSSSSPERN 284
RS RS S R R RG + SSSRS S RS S S S SP ++
Sbjct: 470 RS--------RSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQS 521
Query: 285 RKRSRSRSSSSGDRKKRRTRSRSPESQVIGENTKQ 319
R RSRSRS S R +R S +GE K+
Sbjct: 522 RSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKK 556
Score = 51.2 bits (121), Expect = 1e-06
Identities = 48/126 (38%), Positives = 62/126 (49%), Gaps = 18/126 (14%)
Query: 196 KKSNRRSRSKSRSSH--SRSSSRSSSPSSSRSR---------SRSRSRSS-SSSQSRSRS 243
+ +R SRS +R R SRS S S R R S SRSRSS S S SRSRS
Sbjct: 448 RDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRS 507
Query: 244 SSRERSRSRG---SKSRSSSRSHRGSSSPRKRSYSSSSSSP---ERNRKRSRSRSSSSGD 297
+R RS S S+SRS SRS S SP + + ++SP E+ +K + +G
Sbjct: 508 LTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGA 567
Query: 298 RKKRRT 303
K + T
Sbjct: 568 AKPKLT 573
Score = 50.1 bits (118), Expect = 3e-06
Identities = 89/369 (24%), Positives = 129/369 (34%), Gaps = 130/369 (35%)
Query: 68 DWQCKTCSNVNWARRSECNMCNTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYD-- 125
D+ + ++ + S+ CN +Y L + G +E + + I +E G
Sbjct: 91 DYTPPLLTTISPEQESDERKCNYERYRGLVQNDF--AGISEEQCLYQIYIDELYGGLQRP 148
Query: 126 -EFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE----DDADL 180
E +KK + ++G V + E E+ +E+E ++ + + DEDE D ++
Sbjct: 149 SEDEKKKLAEKKASIGYTYEDSTVAEVEKAAEKPEEEESAAEEESNSDEDEVIPDIDVEV 208
Query: 181 SKYNLDASEEEDSNKKK-------------------------------------SNRRSR 203
L+ + D NK+ S RRSR
Sbjct: 209 DVDELNQEQVADLNKQATTYGMADGDFVRMLRKDKEEAEAIKHAKALEEEKAMYSGRRSR 268
Query: 204 SKSRS--------------SHSRSSS-------RSSSPSSSRSRSRSRS----------- 231
+ R S++R S RS S SSS SRSRSRS
Sbjct: 269 RQRREFREKRLRGRKISPPSYARRDSPTYDPYKRSPSESSSESRSRSRSPTPGREEKITF 328
Query: 232 ----------------------------------------RSSSS---SQSRSRSSSRER 248
R++S+ S S S SSS R
Sbjct: 329 ITSFGGSDEEAAAAAAAAAASGVTTGKPPAPPQPGGPAPGRNASARRRSSSSSSSSSASR 388
Query: 249 SRSRGSKSRSSSRSHRGS--------SSPRKRSYSSSSSSPER-NRKRSRSRSSSSGDRK 299
+ S S SRSSSRS RG + R RS+S S S R +R RSR R S G +
Sbjct: 389 TSSSRSSSRSSSRSRRGGGYYRSGRHARSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSR 448
Query: 300 KRRTRSRSP 308
SRSP
Sbjct: 449 DGHRYSRSP 457
Score = 46.2 bits (108), Expect = 4e-05
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 23/143 (16%)
Query: 200 RRSRSKSRSS------------HSRSSSRSS---SPSSSRSRSRSRSRSSSSSQ----SR 240
RRSRS+S S HS S SRSS SPS SRS +RSRS S S SQ SR
Sbjct: 467 RRSRSRSHSGDRYRRGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSR 526
Query: 241 SRSSSRERSRSRGSKSRSSSRSHRG----SSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
SRS S S +R +R ++ G + P + ++ +++ + R +
Sbjct: 527 SRSQSPSPSPAREKLTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKAL 586
Query: 297 DRKKRRTRSRSPESQVIGENTKQ 319
+R+ + + + E + E+ +Q
Sbjct: 587 NRQFKADKKAAQEKMIQQEHERQ 609
Score = 45.4 bits (106), Expect = 7e-05
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 4/81 (4%)
Query: 193 SNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSR 252
S + S S S+SRS +RS S S SPS SRSRSRSRS+S S S +R + + S +
Sbjct: 492 SRSRSSWSLSPSRSRSL-TRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPAV 550
Query: 253 G---SKSRSSSRSHRGSSSPR 270
G K+ ++ G++ P+
Sbjct: 551 GEKLKKTEPAAGKETGAAKPK 571
Score = 38.5 bits (88), Expect = 0.008
Identities = 31/84 (36%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 150 DKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS 209
DK++ E+ + E ++ E EDE A K + +E + +K+ R SR S
Sbjct: 593 DKKAAQEKMIQQE----HERQEREDELRAMARKIRM---KERERREKEREEWERQYSRQS 645
Query: 210 HSRSSSRSSSPSSSRSRSRSRSRS 233
S S S SSSR RSRSRSRS
Sbjct: 646 RSPSPRYSREYSSSRRRSRSRSRS 669
Score = 35.0 bits (79), Expect = 0.089
Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 59/181 (32%)
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSR-------------- 226
S ++L S + +S+ S S+SRS SRS S+S SPS +R +
Sbjct: 496 SSWSLSPSRSRSLTRSRSHSPSPSQSRS-RSRSRSQSPSPSPAREKLTRPAASPAVGEKL 554
Query: 227 --------------------------------------SRSRSRSSSSSQSRSRSSSRER 248
+ ++ Q R +
Sbjct: 555 KKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQEREDE 614
Query: 249 SRSRGSKSRSSSRSHRGSSSPR-KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
R+ K R R R +R YS S SP + + SR SSS R++ R+RSRS
Sbjct: 615 LRAMARKIRMKERERREKEREEWERQYSRQSRSP--SPRYSREYSSS---RRRSRSRSRS 669
Query: 308 P 308
P
Sbjct: 670 P 670
Score = 33.9 bits (76), Expect = 0.20
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 13/121 (10%)
Query: 180 LSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQS 239
L K A +E + K K + + K R + + + +++ + + +
Sbjct: 554 LKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEKMIQQEHERQERED 613
Query: 240 RSRSSSRE--------RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSR 291
R+ +R+ R + R R SR R S R YSSS R R RSRSR
Sbjct: 614 ELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSS-----RRRSRSRSR 668
Query: 292 S 292
S
Sbjct: 669 S 669
Score = 33.5 bits (75), Expect = 0.26
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRS 204
+++ +++ + +++ E + + + + E ED+ + E E +++ R
Sbjct: 582 MQKALNRQFKADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERE---RREKEREEWE 638
Query: 205 KSRSSHSRSSSRSSSPSSSRSRSRSRSRSSS 235
+ S SRS S S S SR RSRSRS S
Sbjct: 639 RQYSRQSRSPSPRYSREYSSSRRRSRSRSRS 669
Score = 31.6 bits (70), Expect = 0.98
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 137 KAVGPASILKEVEDKESEGEEEDEDEDLSKY-------KLDEDEDEDDADLSKYNLDASE 189
KA A+ K ++ + E EDE +++ + +++ +E + S+ + S
Sbjct: 591 KADKKAAQEKMIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSP 650
Query: 190 EEDSNKKKSNRRSRSKSRSSHSR 212
S RRSRS+SRS H R
Sbjct: 651 RYSREYSSSRRRSRSRSRSPHYR 673
Score = 28.5 bits (62), Expect = 8.3
Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
+E + + R+ R K R + S +SRS S S S SR RS R
Sbjct: 609 QEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSRRRS----R 664
Query: 249 SRSRGSKSR 257
SRSR R
Sbjct: 665 SRSRSPHYR 673
>gi|116812577 LUC7-like 2 [Homo sapiens]
Length = 392
Score = 77.4 bits (189), Expect = 2e-14
Identities = 58/195 (29%), Positives = 96/195 (49%), Gaps = 4/195 (2%)
Query: 122 GEYDEFGRKKKKYRGKA-VGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADL 180
G +D R + GK +G I +++E+ + E+ E + + K E+ + ++ +
Sbjct: 198 GLHDNDRRLADHFGGKLHLGFIEIREKLEELKRVVAEKQEKRNQERLKRREEREREEREK 257
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSS-RSRSRSRSRSSSSSQS 239
+ + S+ ++ + +RR RS+S S + +RS S R RSRS SRS S S
Sbjct: 258 LRRSRSHSKNPKRSRSREHRRHRSRSMSRERKRRTRSKSREKRHRHRSRSSSRSRSRSHQ 317
Query: 240 RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSP-ERNRK-RSRSRSSSSGD 297
RSR SSR+RSR R + S R + R SS SP +R+RK + RS S++G
Sbjct: 318 RSRHSSRDRSRERSKRRSSKERFRDQDLASCDRDRSSRDRSPRDRDRKDKKRSYESANGR 377
Query: 298 RKKRRTRSRSPESQV 312
+ RR+ ++
Sbjct: 378 SEDRRSSEEREAGEI 392
Score = 30.8 bits (68), Expect = 1.7
Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 6/159 (3%)
Query: 153 SEGEEEDEDEDLSK----YKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS 208
+E +EE E +K ++L+E+ + A + + + + EE ++R+K R
Sbjct: 109 AETQEEISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKRE 168
Query: 209 SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSS 268
+ R+S P+SS + + R S+ + R + G K R
Sbjct: 169 AEE--VYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLE 226
Query: 269 PRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
KR + + R + R K RR+RS S
Sbjct: 227 ELKRVVAEKQEKRNQERLKRREEREREEREKLRRSRSHS 265
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 77.4 bits (189), Expect = 2e-14
Identities = 62/151 (41%), Positives = 84/151 (55%), Gaps = 11/151 (7%)
Query: 164 LSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS---SHSRSSSRSSSP 220
L++ +++ D+ S+ + S ++ KS +SR ++RS SHSRS SRSS+
Sbjct: 1287 LNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSST- 1345
Query: 221 SSSRSRSRSRSRSS---SSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS 277
SS RSRS SRSRS S ++RSRSSS +S + SRS SRS R RSY+
Sbjct: 1346 SSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYD 1405
Query: 278 SSSPERNRKRSRSRSSSS---GDRKKRRTRS 305
S R+R RSRS+ S S G RR+RS
Sbjct: 1406 SYY-SRSRSRSRSQRSDSYHRGRSYNRRSRS 1435
Score = 73.9 bits (180), Expect = 2e-13
Identities = 69/189 (36%), Positives = 86/189 (45%), Gaps = 29/189 (15%)
Query: 139 VGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKS 198
V P S+ EV E S + +D+ + + SE + ++ +S
Sbjct: 1272 VRPGSLFDEVRKTARLNRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRS 1331
Query: 199 NRRSRSKSRSSHSRSSSRSSSPSSSRSRS-----RSRSRSSS---------SSQSRSRSS 244
S S+SRS S SS RS S S SRSR R+RSRSSS SS+SRSRSS
Sbjct: 1332 VSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSS 1391
Query: 245 SRE-RSRSRG-------SKSRSSSRSHRGSSSPRKRSYS-------SSSSSPERNRKRSR 289
S + SRSR S+SRS SRS R S R RSY+ S S E +R S
Sbjct: 1392 SYDPHSRSRSYTYDSYYSRSRSRSRSQRSDSYHRGRSYNRRSRSCRSYGSDSESDRSYSH 1451
Query: 290 SRSSSSGDR 298
RS S R
Sbjct: 1452 HRSPSESSR 1460
Score = 73.9 bits (180), Expect = 2e-13
Identities = 53/118 (44%), Positives = 65/118 (55%), Gaps = 10/118 (8%)
Query: 190 EEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS 249
+E + NRR R++ SS ++ SR S SRS SRSRS+S + S+ R+RS S S
Sbjct: 1279 DEVRKTARLNRRPRNQESSSDEQTPSRDDD-SQSRSPSRSRSKSETKSRHRTRSVSYSHS 1337
Query: 250 RSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
RSR S SS RS RSYS S S +R R+RSRSSS K RT SRS
Sbjct: 1338 RSRSRSSTSSYRS---------RSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRS 1386
Score = 73.6 bits (179), Expect = 2e-13
Identities = 62/144 (43%), Positives = 78/144 (54%), Gaps = 18/144 (12%)
Query: 184 NLDASEEEDSNKKKSNRRSRSKSRS-SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQ---- 238
N ++S +E + + + +SRS SRS S S + SR + S S S SRSRSRSS+SS
Sbjct: 1293 NQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRS 1352
Query: 239 -SRSRSS---SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPER--------NRK 286
SRSRS SR R+RSR S R S +SHR SS R RS S S R +R
Sbjct: 1353 YSRSRSRGWYSRGRTRSRSSSYR-SYKSHRTSSRSRSRSSSYDPHSRSRSYTYDSYYSRS 1411
Query: 287 RSRSRSSSSGDRKKRRTRSRSPES 310
RSRSRS S + R+ +R S
Sbjct: 1412 RSRSRSQRSDSYHRGRSYNRRSRS 1435
Score = 70.9 bits (172), Expect = 1e-12
Identities = 51/119 (42%), Positives = 67/119 (56%), Gaps = 2/119 (1%)
Query: 194 NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRS--RSRSRSSSSSQSRSRSSSRERSRS 251
N++ N+ S S ++ S+S SPS SRS+S +SR R+ S S S SRS SR + S
Sbjct: 1288 NRRPRNQESSSDEQTPSRDDDSQSRSPSRSRSKSETKSRHRTRSVSYSHSRSRSRSSTSS 1347
Query: 252 RGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
S+S S SRS S R RS SSS S + +R SRSRS SS R+RS + +S
Sbjct: 1348 YRSRSYSRSRSRGWYSRGRTRSRSSSYRSYKSHRTSSRSRSRSSSYDPHSRSRSYTYDS 1406
Score = 69.7 bits (169), Expect = 3e-12
Identities = 59/142 (41%), Positives = 76/142 (53%), Gaps = 6/142 (4%)
Query: 181 SKYNLDASEEEDSNKKKSNRRSRSKS-RSSHSRSSSRSSSPSSSRSRSRS-RSRSSSSSQ 238
S Y+L +E S+ R S+S +S++S+ S RSS SS RSRSRS RSRS S S
Sbjct: 648 STYSLANIKETGSSSSYHKREKNSESDQSTYSKYSDRSSE-SSPRSRSRSSRSRSYSRSY 706
Query: 239 SRSRS--SSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
+RSRS SS RSRS S+S S ++ S R SY+S SS R KR R RSS
Sbjct: 707 TRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKR-RLRSSGKK 765
Query: 297 DRKKRRTRSRSPESQVIGENTK 318
+ + S S E + + K
Sbjct: 766 NSVSHKKHSSSSEKTLHSKYVK 787
Score = 63.5 bits (153), Expect = 2e-10
Identities = 53/123 (43%), Positives = 63/123 (51%), Gaps = 12/123 (9%)
Query: 194 NKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG 253
+ K S RR +S S SSRSSS SS S R S+S QS SSR+ RS
Sbjct: 467 SSKSSTRRMKS---SCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRS-- 521
Query: 254 SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVI 313
KS S S S RGSS R S SSS S R RS+SRSSS +KR ++S + +
Sbjct: 522 -KSHSQSYS-RGSSRSRTASKSSSHS-----RSRSKSRSSSKSGHRKRASKSPRKTASQL 574
Query: 314 GEN 316
EN
Sbjct: 575 SEN 577
Score = 62.8 bits (151), Expect = 4e-10
Identities = 57/146 (39%), Positives = 77/146 (52%), Gaps = 21/146 (14%)
Query: 165 SKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSR 224
S +K +++ + D + SKY+ D S E + + RSRS SR S++RS S +SS S SR
Sbjct: 663 SYHKREKNSESDQSTYSKYS-DRSSESSPRSRSRSSRSRSYSR-SYTRSRSLASSHSRSR 720
Query: 225 S-RSRSRSRSSSSSQSR-SRSSS------------RERSRSRGSKSRSSSRSHRGSSSPR 270
S SRS SR+ S S+ SRSSS + R RS G K+ S + H SSS
Sbjct: 721 SPSSRSHSRNKYSDHSQCSRSSSYTSISSDDGRRAKRRLRSSGKKNSVSHKKH--SSSSE 778
Query: 271 KRSYSSSSSSPERN---RKRSRSRSS 293
K +S +R+ RK S SRSS
Sbjct: 779 KTLHSKYVKGRDRSSCVRKYSESRSS 804
Score = 60.1 bits (144), Expect = 3e-09
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 10/172 (5%)
Query: 100 TGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEED 159
T G +++ E + + G+ + R+ K+ + + + I ++E +S
Sbjct: 420 TARHSGHHKKRRKEKKVKHKKKGKKQKHCRRHKQTKKRRI---LIPSDIESSKSSTRR-- 474
Query: 160 EDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSS 219
K D + + LS ++ + S+K + + S S S+S S+S S
Sbjct: 475 -----MKSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYS 529
Query: 220 PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRK 271
SSRSR+ S+S S S S+S+SRSSS+ R R SKS + S + P K
Sbjct: 530 RGSSRSRTASKSSSHSRSRSKSRSSSKSGHRKRASKSPRKTASQLSENKPVK 581
Score = 57.0 bits (136), Expect = 2e-08
Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPS-SSRSRSRSRSRSSSSSQSRSRSSS 245
+S + S++R SKS S + SS S S+S S+S SR SS S++ S+SSS
Sbjct: 484 SSRSSSLSSHHSSKRDWSKSDKDVQSSLTHSSRDSYRSKSHSQSYSRGSSRSRTASKSSS 543
Query: 246 RERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSP 281
RSRS+ S S R S SPRK + S + P
Sbjct: 544 HSRSRSKSRSSSKSGHRKRASKSPRKTASQLSENKP 579
Score = 51.6 bits (122), Expect = 9e-07
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 4/120 (3%)
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
+++ +K R ++K R S SS S+ R +S SS S S S S +R
Sbjct: 439 KKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRMKSSCDRERSSRSSSLSSHHSSKR 498
Query: 249 SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-SSSGDRKKRRTRSRS 307
S+ K SS +H S R +S+S S S R RSR+ S SSS R + ++RS S
Sbjct: 499 DWSKSDKDVQSSLTHSSRDSYRSKSHSQSYS---RGSSRSRTASKSSSHSRSRSKSRSSS 555
Score = 42.4 bits (98), Expect = 6e-04
Identities = 30/114 (26%), Positives = 46/114 (40%), Gaps = 7/114 (6%)
Query: 203 RSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRS 262
+ + + +HS S SS+ SSS S SSS S+ S R + + R RS R
Sbjct: 187 KKRKKPTHSEGSDSSSNSSSS-------SESSSESELEHERSRRRKHKRRPKVKRSKKRR 239
Query: 263 HRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQVIGEN 316
SSS R+ + + R + + S K+ + R E + EN
Sbjct: 240 KEASSSEEPRNKHAMNPKGHSERSDTNEKRSVDSSAKREKPVVRPEEIPPVPEN 293
Score = 41.6 bits (96), Expect = 0.001
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 44/177 (24%)
Query: 176 DDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSR--------------SSSRSSSPS 221
DD +K L +S +++S K + S S ++ HS+ S SRSS
Sbjct: 750 DDGRRAKRRLRSSGKKNSVSHK--KHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSSLDY 807
Query: 222 SSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH------------------ 263
SS S +S +++ S+Q + + ER+ ++ K+R +S
Sbjct: 808 SSDS-EQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEKSKSERECPHSKKRTLKENLS 866
Query: 264 ---RGSSSPRKRSYSSSSSSPERNRKR-----SRSRSSSSGDRKKRRTRSRSPESQV 312
R S P++++Y+ S E N +R S++ S S D+++ S S ES+V
Sbjct: 867 DHLRNGSKPKRKNYAGSKWDSESNSERDVTKNSKNDSHPSSDKEEGEATSDS-ESEV 922
Score = 41.6 bits (96), Expect = 0.001
Identities = 40/230 (17%), Positives = 90/230 (39%), Gaps = 14/230 (6%)
Query: 82 RSECNMCNTPKYAKLEERTGYGGGFNER--ENVEYIEREESDGEYDEFGRKKKKYRGKAV 139
RS C KY++ Y + + + + +E G+ + K++K RG+
Sbjct: 791 RSSC----VRKYSESRSSLDYSSDSEQSSVQATQSAQEKEKQGQMERTHNKQEKNRGEEK 846
Query: 140 GPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSN 199
+ +E + +E+ + L + ++ SK++ +++ E D K N
Sbjct: 847 SKSE--RECPHSKKRTLKENLSDHLRNGSKPKRKNYAG---SKWDSESNSERDVTKNSKN 901
Query: 200 RRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSS 259
S + +S S S + + ++SS+++ + + + S+ R S S S
Sbjct: 902 DSHPSSDKEEGEATSDSESEVSEIHIKVKPTTKSSTNTSLPDDNGAWKSSKQRTSTSDSE 961
Query: 260 ---SRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
S S P+K + S + + K+ + + D+K + + +
Sbjct: 962 GSCSNSENNRGKPQKHKHGSKENLKREHTKKVKEKLKGKKDKKHKAPKRK 1011
Score = 40.4 bits (93), Expect = 0.002
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 1/116 (0%)
Query: 195 KKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGS 254
K R K++++H + S ++ + S S S S S+ + R S
Sbjct: 627 KPSYERIQEMKAKTTHLLPIQSTYSLANIKETGSSSSYHKREKNSESDQSTYSKYSDRSS 686
Query: 255 KSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
+S SRS S RSY+ S S + RSRS SS S R K S+ S
Sbjct: 687 ESSPRSRSRSSRSRSYSRSYTRSRSLAS-SHSRSRSPSSRSHSRNKYSDHSQCSRS 741
Score = 38.5 bits (88), Expect = 0.008
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 16/142 (11%)
Query: 178 ADLSKYNLDASEEEDSNKKKSNRRSRSKSRSS---HSRSSSRSSSPSSSRSRSRSRSRSS 234
+DLS ++ +KK + + K + H ++ R S S+S +R
Sbjct: 416 SDLSTARHSGHHKKRRKEKKVKHKKKGKKQKHCRRHKQTKKRRILIPSDIESSKSSTRRM 475
Query: 235 SSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRS-- 292
SS R RSS S S R S+S + S S + SS R++ S+S S
Sbjct: 476 KSSCDRERSSRSSSLSSHHSSKRDWSKSDKDVQS----SLTHSSRDSYRSKSHSQSYSRG 531
Query: 293 -------SSSGDRKKRRTRSRS 307
S S + R++SRS
Sbjct: 532 SSRSRTASKSSSHSRSRSKSRS 553
Score = 37.4 bits (85), Expect = 0.018
Identities = 48/242 (19%), Positives = 87/242 (35%), Gaps = 29/242 (11%)
Query: 89 NTPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEV 148
+T A ++E TG +++RE ++ D + R ++ S +
Sbjct: 648 STYSLANIKE-TGSSSSYHKREKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSY 706
Query: 149 EDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRS 208
S S ++ D + S+ + S D RR++ + RS
Sbjct: 707 TRSRSLASSHSRSRSPSSRSHSRNKYSDHSQCSRSSSYTSISSDDG-----RRAKRRLRS 761
Query: 209 S----------HSRSSSRSSSPSSSRSRSR-------SRSRSSSSSQSRSRSSSRERSRS 251
S HS SS ++ + R R S SRSS S S SS + ++S
Sbjct: 762 SGKKNSVSHKKHSSSSEKTLHSKYVKGRDRSSCVRKYSESRSSLDYSSDSEQSSVQATQS 821
Query: 252 ------RGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRS 305
+G R+ ++ + + +S S +R K + S +G + KR+ +
Sbjct: 822 AQEKEKQGQMERTHNKQEKNRGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYA 881
Query: 306 RS 307
S
Sbjct: 882 GS 883
Score = 35.8 bits (81), Expect = 0.052
Identities = 25/102 (24%), Positives = 40/102 (39%), Gaps = 4/102 (3%)
Query: 214 SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG----SSSP 269
+++S + R + S S S S SSS S S RS R H+ S
Sbjct: 177 ATKSIKDVFEKKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSK 236
Query: 270 RKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQ 311
++R +SSS P + S D ++R+ S + +
Sbjct: 237 KRRKEASSSEEPRNKHAMNPKGHSERSDTNEKRSVDSSAKRE 278
Score = 35.4 bits (80), Expect = 0.068
Identities = 31/92 (33%), Positives = 42/92 (45%), Gaps = 13/92 (14%)
Query: 230 RSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSR 289
+S S ++ + SSS R + S+S S+ S K S SS SSP + SR
Sbjct: 647 QSTYSLANIKETGSSSSYHKREKNSESDQSTYS--------KYSDRSSESSPRSRSRSSR 698
Query: 290 SRSSSSGDRKKR-----RTRSRSPESQVIGEN 316
SRS S + R +RSRSP S+ N
Sbjct: 699 SRSYSRSYTRSRSLASSHSRSRSPSSRSHSRN 730
Score = 35.0 bits (79), Expect = 0.089
Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 11/92 (11%)
Query: 192 DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRS 251
+ +KK S S S+ S SS SS RSR R RS+ +E S S
Sbjct: 186 EKKRKKPTHSEGSDSSSNSSSSSESSSESELEHERSRRRKHKRRPKVKRSKKRRKEASSS 245
Query: 252 -----------RGSKSRSSSRSHRGSSSPRKR 272
+G RS + R S KR
Sbjct: 246 EEPRNKHAMNPKGHSERSDTNEKRSVDSSAKR 277
Score = 33.1 bits (74), Expect = 0.34
Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 15/191 (7%)
Query: 108 ERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKY 167
E+E +ER + E + K K R LKE + + ++ +
Sbjct: 824 EKEKQGQMERTHNKQEKNRGEEKSKSERECPHSKKRTLKENLSDHLRNGSKPKRKNYAGS 883
Query: 168 KLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH--------SRSSSRSSS 219
K D E + D++K N S+K++ S S+S S ++SS+ +S
Sbjct: 884 KWDS-ESNSERDVTK-NSKNDSHPSSDKEEGEATSDSESEVSEIHIKVKPTTKSSTNTSL 941
Query: 220 PSSSRSRSRSRSRSSSSSQSRSRSSS-----RERSRSRGSKSRSSSRSHRGSSSPRKRSY 274
P + + S+ R+S+S S S+S + + GSK + K
Sbjct: 942 PDDNGAWKSSKQRTSTSDSEGSCSNSENNRGKPQKHKHGSKENLKREHTKKVKEKLKGKK 1001
Query: 275 SSSSSSPERNR 285
+P+R +
Sbjct: 1002 DKKHKAPKRKQ 1012
Score = 32.0 bits (71), Expect = 0.75
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 168 KLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRS-- 225
K E D + S + ++S E + ++S RR + K R RS R SSS
Sbjct: 191 KPTHSEGSDSSSNSSSSSESSSESELEHERSRRR-KHKRRPKVKRSKKRRKEASSSEEPR 249
Query: 226 -----RSRSRSRSSSSSQSRSRSSSRERSR 250
+ S S +++ RS SS +R +
Sbjct: 250 NKHAMNPKGHSERSDTNEKRSVDSSAKREK 279
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 75.9 bits (185), Expect = 5e-14
Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210
KE+ + +K K DE D K S E+D + K+ +R + S SS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+RS S S+S S S + + S S SSSSS S SRS S SRS SSS S GS SP
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
Query: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309
+R + NR+RSRS+S D K+R+ RS SP+
Sbjct: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
Score = 55.8 bits (133), Expect = 5e-08
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS ++R R + K RS+S G
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
Query: 266 SSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
SSS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Score = 43.1 bits (100), Expect = 3e-04
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176
KK +A P K + + + ++ +D+ +K ++D D
Sbjct: 19 KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
Query: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230
+ S S S S+ SRS S SS SRSSS SS SPS SR R +R
Sbjct: 76 RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
Query: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
RS S S+ R E+ R R S S ++ H G
Sbjct: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
RS R R S SPR+RS S SP R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 33.5 bits (75), Expect = 0.26
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
+S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 6.4
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
+ RRSRS R S R SRS R R RSRSSS+S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 75.9 bits (185), Expect = 5e-14
Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210
KE+ + +K K DE D K S E+D + K+ +R + S SS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+RS S S+S S S + + S S SSSSS S SRS S SRS SSS S GS SP
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
Query: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309
+R + NR+RSRS+S D K+R+ RS SP+
Sbjct: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
Score = 55.8 bits (133), Expect = 5e-08
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS ++R R + K RS+S G
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
Query: 266 SSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
SSS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Score = 43.1 bits (100), Expect = 3e-04
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176
KK +A P K + + + ++ +D+ +K ++D D
Sbjct: 19 KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
Query: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230
+ S S S S+ SRS S SS SRSSS SS SPS SR R +R
Sbjct: 76 RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
Query: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
RS S S+ R E+ R R S S ++ H G
Sbjct: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
RS R R S SPR+RS S SP R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 33.5 bits (75), Expect = 0.26
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
+S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 6.4
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
+ RRSRS R S R SRS R R RSRSSS+S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
>gi|40805104 topoisomerase I binding, arginine/serine-rich [Homo
sapiens]
Length = 1045
Score = 75.9 bits (185), Expect = 5e-14
Identities = 67/199 (33%), Positives = 92/199 (46%), Gaps = 28/199 (14%)
Query: 139 VGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKS 198
+G ++ V+ +E E D D+S+ D ++K + D+S S K++
Sbjct: 504 LGSYEKMETVKTQEQEQSYSSGDSDVSRCSSPHSVLGKDEQINKGHCDSSTRIKSKKEEK 563
Query: 199 NRRSRSKSRSSHSR-SSSRSSSPSSSRSRSRSRSRSSSS-SQSRS--------------- 241
S S R+ +S R SP + R R R RSRSS S SQSRS
Sbjct: 564 RSTSLSSPRNLNSSVRGDRVYSPYNHRHRKRGRSRSSDSRSQSRSGHDQKNHRKHHGKKR 623
Query: 242 ----RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGD 297
RS SRE SR RG + + SR+ S S R ++ S SS S RSRSRSS G
Sbjct: 624 MKSKRSRSRESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSES----TSRSRSRSSDHG- 678
Query: 298 RKKRRTRSRSPESQVIGEN 316
KRR+RSR+ + + N
Sbjct: 679 --KRRSRSRNRDRYYLRNN 695
Score = 55.5 bits (132), Expect = 6e-08
Identities = 78/284 (27%), Positives = 109/284 (38%), Gaps = 63/284 (22%)
Query: 90 TPKYAKLEERTGYGGGFNERENVEYIEREESDGEYDE-----------FGRKKKKYRGKA 138
TP+ +L + G + + E V+ E+E+S D G+ ++ +G
Sbjct: 491 TPELVELSSDSEDLGSYEKMETVKTQEQEQSYSSGDSDVSRCSSPHSVLGKDEQINKGHC 550
Query: 139 VGPASILKEVEDKESEGEEEDE--------DEDLSKY-----KLDEDEDEDDADLSKYNL 185
I + E+K S D S Y K D S+
Sbjct: 551 DSSTRIKSKKEEKRSTSLSSPRNLNSSVRGDRVYSPYNHRHRKRGRSRSSDSRSQSRSGH 610
Query: 186 DASEEEDSNKKKSNRRSRSKSRSSH--------SRSSSRSSSPS--------SSRSRSRS 229
D + KK + RS+SR S RS +R SS S SS S SRS
Sbjct: 611 DQKNHRKHHGKKRMKSKRSRSRESSRPRGRRDKKRSRTRDSSWSRRSQTLSLSSESTSRS 670
Query: 230 RSRSSSSSQSRSRSSSRERSRSR---GSK--------SRSSSRSHRGSSSPR----KRSY 274
RSRSS + RSRS +R+R R GS+ SR+ R SS R + Y
Sbjct: 671 RSRSSDHGKRRSRSRNRDRYYLRNNYGSRYKWEYTYYSRNKDRDGYESSYRRRTLSRAHY 730
Query: 275 SSSSSSPERN----RKRSRSRSSSSGDRKK----RRTRSRSPES 310
S SSSPE +R+ +R ++ +K R RSRS S
Sbjct: 731 SRQSSSPEFRVQSFSERTNARKKNNHSERKYYYYERHRSRSLSS 774
Score = 47.8 bits (112), Expect = 1e-05
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSS---------------RSSSPSSSRS-----RS 227
S +D + +S+ R R+ SR+ +SR SS R + S R R
Sbjct: 708 SRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFRVQSFSERTNARKKNNHSERKYYYYERH 767
Query: 228 RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG-----------SSSPRKRSYSS 276
RSRS SS+ S++ S + R R+ G K + +R G +S + Y
Sbjct: 768 RSRSLSSNRSRTASTGTDRVRNEKPGGKRKYKTRHLEGTNEVAQPSREFASKAKDSHYQK 827
Query: 277 SSSSPERNRKR-----SRSRSS---SSGDRKKRRTRSRSPESQVIGENT 317
SSS + N K S SRSS + R+KR+TRS S E G+ T
Sbjct: 828 SSSKLDGNYKNESDTFSDSRSSDRETKHKRRKRKTRSLSVEIVYEGKAT 876
Score = 31.6 bits (70), Expect = 0.98
Identities = 36/218 (16%), Positives = 83/218 (38%), Gaps = 13/218 (5%)
Query: 99 RTGYGGGFNERENVEYIEREESDGEYDEFGRK---KKKYRGKAVGPASILKEVEDKESEG 155
R YG + + E Y ++ DG + R+ + Y ++ P ++ ++ +
Sbjct: 693 RNNYGSRY-KWEYTYYSRNKDRDGYESSYRRRTLSRAHYSRQSSSPEFRVQSFSERTNAR 751
Query: 156 EEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSS 215
++ + E Y + + + N+K +R K ++ H ++
Sbjct: 752 KKNNHSER-KYYYYERHRSRSLSSNRSRTASTGTDRVRNEKPGGKR---KYKTRHLEGTN 807
Query: 216 RSSSPS---SSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGS--KSRSSSRSHRGSSSPR 270
+ PS +S+++ +SSS ++ S S SR S +++ R + S
Sbjct: 808 EVAQPSREFASKAKDSHYQKSSSKLDGNYKNESDTFSDSRSSDRETKHKRRKRKTRSLSV 867
Query: 271 KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
+ Y ++ ++ K+ + + + SRSP
Sbjct: 868 EIVYEGKATDTTKHHKKKKKKHKKKHKKHHGDNASRSP 905
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 75.9 bits (185), Expect = 5e-14
Identities = 53/135 (39%), Positives = 72/135 (53%), Gaps = 14/135 (10%)
Query: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
A E + +K+ + RSRS+SR + SSSR S SRSR RS S+S S +S+S R
Sbjct: 236 AIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRR-SRSRSRRRSHSKSRSRRRSKSPRRRR 294
Query: 247 ERSRSRGSKSRSSSRSH----------RGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
SR RG +SRS+S++ R + P+ S + S S R R+R RSRS +
Sbjct: 295 SHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRS 354
Query: 297 DRKKR---RTRSRSP 308
+K R R SRSP
Sbjct: 355 PKKPRSPKRKLSRSP 369
Score = 67.4 bits (163), Expect = 2e-11
Identities = 55/149 (36%), Positives = 70/149 (46%), Gaps = 31/149 (20%)
Query: 191 EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERS- 249
E K++ R SRS+SRS R+ S SS SRSRSR RS S S S+ RS+S R RS
Sbjct: 238 EPDKKEEKRRHSRSRSRSRRRRTPS-SSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSH 296
Query: 250 -RSRGSKSRSSS--------------------------RSHRGSSSPRKRSYSSSSSSPE 282
R RG +SRS+S RS S R+R S + SP+
Sbjct: 297 SRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPK 356
Query: 283 RNR--KRSRSRSSSSGDRKKRRTRSRSPE 309
+ R KR SRS S KK + + + E
Sbjct: 357 KPRSPKRKLSRSPSPRRHKKEKKKDKDKE 385
Score = 63.9 bits (154), Expect = 2e-10
Identities = 64/207 (30%), Positives = 87/207 (42%), Gaps = 51/207 (24%)
Query: 146 KEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSK 205
KE+E+ E + L ++ D+ E+ S+ + S + +RRSRS+
Sbjct: 217 KEIEEAMKRVREA---QSLISAAIEPDKKEEKRRHSR-SRSRSRRRRTPSSSRHRRSRSR 272
Query: 206 SRS---SHSRSSSRSSSPSSSRSRSRSRSRSSSSSQS----------------------- 239
SR S SRS RS SP RS SR R R S S+
Sbjct: 273 SRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYST 332
Query: 240 --RSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRK----------- 286
RSRS+SRER R R SRS +RS + SP+++ S S SP R++K
Sbjct: 333 ARRSRSASRERRRRR---SRSGTRSPKKPRSPKRK--LSRSPSPRRHKKEKKKDKDKERS 387
Query: 287 ---RSRSRSSSSGDRKKRRTRSRSPES 310
R RS S + K + R R ES
Sbjct: 388 RDERERSTSKKKKSKDKEKDRERKSES 414
Score = 62.8 bits (151), Expect = 4e-10
Identities = 49/138 (35%), Positives = 62/138 (44%), Gaps = 16/138 (11%)
Query: 186 DASEEEDSNKKKSNRRSRSK-SRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSS 244
D S +E K R ++S S + S SRSRSR R SSS RSRS
Sbjct: 213 DTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSR 272
Query: 245 SRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR---------------SR 289
SR RS S+ R S R S R+R S S+S R++K+ S
Sbjct: 273 SRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSYST 332
Query: 290 SRSSSSGDRKKRRTRSRS 307
+R S S R++RR RSRS
Sbjct: 333 ARRSRSASRERRRRRSRS 350
Score = 58.2 bits (139), Expect = 1e-08
Identities = 41/123 (33%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
++ED KK+S +S S + SRS+SR R RSRS +RS +S R SR
Sbjct: 314 KKEDKEKKRSKTPPKSYSTARRSRSASRERR----RRRSRSGTRSPKKPRSPKRKLSRSP 369
Query: 249 SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSP 308
S R K + + S R+RS S S +++++ R R S S K+ TR
Sbjct: 370 SPRRHKKEKKKDKDKERSRDERERSTSKKKKS--KDKEKDRERKSESDKDVKQVTRDYDE 427
Query: 309 ESQ 311
E Q
Sbjct: 428 EEQ 430
Score = 57.8 bits (138), Expect = 1e-08
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 2/116 (1%)
Query: 191 EDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSR 250
+ K + + R + S S+ R SRSRS S + SS RSR
Sbjct: 211 KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSR 270
Query: 251 SRG-SKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRS 305
SR +S S SRS R S SPR+R S S R+R S++R D++K+R+++
Sbjct: 271 SRSRRRSHSKSRSRRRSKSPRRRR-SHSRERGRRSRSTSKTRDKKKEDKEKKRSKT 325
Score = 45.1 bits (105), Expect = 9e-05
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 214 SSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRS 273
S +S + S + R R + S S + ++ + R S+SRS SR R SS R R
Sbjct: 209 SLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRR 268
Query: 274 YSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
S S ++ RSR RS S ++RR+ SR
Sbjct: 269 SRSRSRRRSHSKSRSRRRSKSP---RRRRSHSR 298
Score = 43.9 bits (102), Expect = 2e-04
Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 14/109 (12%)
Query: 206 SRSSHSRSSSRSSSPSSSRSRSRSRSRSSS---SSQSRSRSSSRERSRSRGSKSRSSSRS 262
S S S +SS+ + R R S++ + R SR RSRSR ++ SSSR
Sbjct: 207 SPSLKSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRH 266
Query: 263 HRGSSSPRKRSYSSSSSSPERNRKRSRSRS----SSSGDRKKRRTRSRS 307
R S R+RS+S S R R RS+S S + RR+RS S
Sbjct: 267 RRSRSRSRRRSHSKS-------RSRRRSKSPRRRRSHSRERGRRSRSTS 308
Score = 35.4 bits (80), Expect = 0.068
Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 129 RKKKKYRGKAVGPASILKEVE-DKESEGEEEDEDEDLSKYKLDEDEDED-------DADL 180
R K+ ++ P KE + DK+ E ++ + SK K +D+++D D D+
Sbjct: 359 RSPKRKLSRSPSPRRHKKEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDV 418
Query: 181 SKYNLDASEEE---DSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR 228
+ D EEE DS K+K + ++ S ++ S S S+
Sbjct: 419 KQVTRDYDEEEQGYDSEKEKKEEKKPIETGSPKTKECSVEKGTGDSLRESK 469
Score = 29.3 bits (64), Expect = 4.9
Identities = 16/92 (17%), Positives = 33/92 (35%)
Query: 195 KKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGS 254
K+K + + +SR RS+S+ +S S + +R E
Sbjct: 376 KEKKKDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSE 435
Query: 255 KSRSSSRSHRGSSSPRKRSYSSSSSSPERNRK 286
K + + + SP+ + S + + R+
Sbjct: 436 KEKKEEKKPIETGSPKTKECSVEKGTGDSLRE 467
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 75.9 bits (185), Expect = 5e-14
Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210
KE+ + +K K DE D K S E+D + K+ +R + S SS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+RS S S+S S S + + S S SSSSS S SRS S SRS SSS S GS SP
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
Query: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309
+R + NR+RSRS+S D K+R+ RS SP+
Sbjct: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
Score = 55.8 bits (133), Expect = 5e-08
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS ++R R + K RS+S G
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
Query: 266 SSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
SSS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Score = 43.1 bits (100), Expect = 3e-04
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176
KK +A P K + + + ++ +D+ +K ++D D
Sbjct: 19 KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
Query: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230
+ S S S S+ SRS S SS SRSSS SS SPS SR R +R
Sbjct: 76 RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
Query: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
RS S S+ R E+ R R S S ++ H G
Sbjct: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
RS R R S SPR+RS S SP R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 34.3 bits (77), Expect = 0.15
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
++S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 264 RRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 220 PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK---SRSSSRSHR 264
P RS R R RS S R RS R RSRS G + SRSSS S R
Sbjct: 261 PMWRRSPPRMRRRSRSP---RRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
Score = 28.5 bits (62), Expect = 8.3
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
R S R RS SP RS R RSRS + RSRSSS
Sbjct: 264 RRSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSS 301
>gi|50962882 G patch domain containing 8 [Homo sapiens]
Length = 1502
Score = 75.9 bits (185), Expect = 5e-14
Identities = 66/214 (30%), Positives = 93/214 (43%), Gaps = 18/214 (8%)
Query: 107 NERENVEYIEREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSK 166
+++ +Y E EE + E R + + + S + S D D S
Sbjct: 829 HQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRS------SRRSYSSSSDASSDQSC 882
Query: 167 YK----LDEDEDEDDADLSKYNLDASEEED-----SNKKKSNRRSRSKSRSSHSRSSSRS 217
Y +D D +D S+ + S + D S+K +S R S S +S S S+S
Sbjct: 883 YSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDDYSLSCSQS 942
Query: 218 SSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSS 277
S S S +R RSRSR S S S SRS S+ RSRS + S SRS+ S RS S
Sbjct: 943 RSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRSTRSPSQR 1002
Query: 278 SSSPERNRKRSRSRSSSSGDR---KKRRTRSRSP 308
S S +R+ SG R + + RS+SP
Sbjct: 1003 SGSRKRSWGHESPEERHSGRRDFIRSKIYRSQSP 1036
Score = 74.3 bits (181), Expect = 1e-13
Identities = 70/218 (32%), Positives = 95/218 (43%), Gaps = 24/218 (11%)
Query: 118 EESDGEYDEFGRKK-------KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLD 170
E S G+ DE G +K++G+ + P+S + K S
Sbjct: 763 EGSSGKKDEGGGGSSSQDHGGRKHKGE-LPPSSCQRRAGTKRSSRSSHRSQPSSG----- 816
Query: 171 EDEDEDDADL--------SKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSS 222
DED DDA S+Y+ + EEEDS + S RSRS R S RSS RS S SS
Sbjct: 817 -DEDSDDASSHRLHQKSPSQYS-EEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYSSSS 874
Query: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
S +S S S S +RSR +S S S SS R + + SSS +
Sbjct: 875 DASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSSDDD 934
Query: 283 RNRKRSRSRSSS-SGDRKKRRTRSRSPESQVIGENTKQ 319
+ S+SRS S S R++ R+R RS S +K+
Sbjct: 935 YSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKR 972
Score = 64.3 bits (155), Expect = 1e-10
Identities = 68/211 (32%), Positives = 85/211 (40%), Gaps = 15/211 (7%)
Query: 118 EESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDE------DEDLSKYKLDE 171
+ S G+ D + K+ S +E ED SE S +
Sbjct: 812 QPSSGDEDSDDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRSRSGRRHSSHRSSRRSYS 871
Query: 172 DEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRS 231
+ +D S Y+ S +DS S+R R RS S S +SS S+ S S
Sbjct: 872 SSSDASSDQSCYSRQRSYSDDSYSDYSDRSRRHSKRSHDSDDSDYASSKHRSKRHKYSSS 931
Query: 232 R---SSSSSQSRSRSSS----RERSRSRG-SKSRSSSRSHRGSSSPRKRSYSSSSSSPER 283
S S SQSRSRS S R RSR R S S S SRS R S S S+ S S
Sbjct: 932 DDDYSLSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRD 991
Query: 284 NRKRSRSRSSSSGDRKKRRTRSRSPESQVIG 314
+ +RS S SG R KR SPE + G
Sbjct: 992 RSRSTRSPSQRSGSR-KRSWGHESPEERHSG 1021
Score = 54.7 bits (130), Expect = 1e-07
Identities = 72/322 (22%), Positives = 113/322 (35%), Gaps = 45/322 (13%)
Query: 20 CGNVNFARRTSCNRCGREKTTEAKMMKAGGTEIGKTLAEKSRGLFSANDWQCKTCSNVNW 79
C + F + S N+ R K TE +IG + + +GL + K
Sbjct: 569 CNPLYFDFKLSRNKDARTKGTEKPK------DIGSSSKDHLQGLDPGEPNKSKEVGGEKI 622
Query: 80 ARRSECNMCNTPKYAKL------EERTGYGGGFNERENVEYIEREESDGEYDEFGRKKKK 133
R S M + P +E G G E ++E G+ +KKKK
Sbjct: 623 VRSSGGRM-DAPASGSACSGLNKQEPGGSHGSETEDTGRSLPSKKERSGKSHRH-KKKKK 680
Query: 134 YRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSK----------- 182
++ + + E+K S+ E ++ + K K +++ AD +
Sbjct: 681 HKKSSKHKRKHKADTEEKSSKAESGEKSKKRKKRKRKKNKSSAPADSERGPKPEPPGSGS 740
Query: 183 --------------YNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSR 228
EE S+ KK S S+ R PSS + R+
Sbjct: 741 PAPPRRRRRAQDDSQRRSLPAEEGSSGKKDEGGGGSSSQDHGGRKHKGELPPSSCQRRAG 800
Query: 229 SRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRS 288
++ S SS +S+ S + S SS R H+ S S S E +R RS
Sbjct: 801 TKRSSRSSHRSQPSSGDED------SDDASSHRLHQKSPSQYSEEEEEEDSGSEHSRSRS 854
Query: 289 RSRSSSSGDRKKRRTRSRSPES 310
RS S R RR+ S S ++
Sbjct: 855 RSGRRHSSHRSSRRSYSSSSDA 876
Score = 43.1 bits (100), Expect = 3e-04
Identities = 49/204 (24%), Positives = 80/204 (39%), Gaps = 32/204 (15%)
Query: 116 EREESDGEYDEFGRKKKKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDE 175
+R SD Y ++ + +++ ++ + +S+ KY +D+
Sbjct: 886 QRSYSDDSYSDYSDRSRRHSKRSH---------DSDDSDYASSKHRSKRHKYSSSDDDYS 936
Query: 176 DDADLSKYNLDASEEEDSNKKKSNR-------RSRSKSRS----------SHSRSSSRSS 218
S+ + E S + +R RS+ +SRS S+SR SRS+
Sbjct: 937 LSCSQSRSRSRSHTRERSRSRGRSRSSSCSRSRSKRRSRSTTAHSWQRSRSYSRDRSRST 996
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS--RSHRGSSSPRK---RS 273
S RS SR RS S + R S R+ RS+ +S+S RS RG +K R
Sbjct: 997 RSPSQRSGSRKRSWGHESPEER-HSGRRDFIRSKIYRSQSPHYFRSGRGEGPGKKDDGRG 1055
Query: 274 YSSSSSSPERNRKRSRSRSSSSGD 297
S ++ P + S GD
Sbjct: 1056 DDSKATGPPSQNSNIGTGRGSEGD 1079
Score = 35.4 bits (80), Expect = 0.068
Identities = 35/166 (21%), Positives = 56/166 (33%), Gaps = 26/166 (15%)
Query: 172 DEDEDDADLSKYNLDASEEEDSNKKK----------SNRRSRSKSRSSHSRSSSRSSSPS 221
++ +D SK +L + + NK K S R + + S ++
Sbjct: 590 EKPKDIGSSSKDHLQGLDPGEPNKSKEVGGEKIVRSSGGRMDAPASGSACSGLNKQEPGG 649
Query: 222 SSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSP------------ 269
S S + RS S + RS S R + + + KS R H+ +
Sbjct: 650 SHGSETEDTGRSLPSKKERSGKSHRHKKKKKHKKSSKHKRKHKADTEEKSSKAESGEKSK 709
Query: 270 ----RKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPESQ 311
RKR + SS+ + R S RR R +SQ
Sbjct: 710 KRKKRKRKKNKSSAPADSERGPKPEPPGSGSPAPPRRRRRAQDDSQ 755
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 75.9 bits (185), Expect = 5e-14
Identities = 61/160 (38%), Positives = 80/160 (50%), Gaps = 16/160 (10%)
Query: 151 KESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSH 210
KE+ + +K K DE D K S E+D + K+ +R + S SS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSS 74
Query: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
+RS S S+S S S + + S S SSSSS S SRS S SRS SSS S GS SP
Sbjct: 75 TRSRSSSTSSSGSSTSTGSSSGSSSSSAS-SRSGSSSTSRS------SSSSSSSGSPSPS 127
Query: 271 KRSYSSSSSSPERNRKRSRSRSS-SSGDRKKRRTRSRSPE 309
+R + NR+RSRS+S D K+R+ RS SP+
Sbjct: 128 RRRHD--------NRRRSRSKSKPPKRDEKERKRRSPSPK 159
Score = 55.8 bits (133), Expect = 5e-08
Identities = 39/106 (36%), Positives = 59/106 (55%), Gaps = 5/106 (4%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS-RERSRSRGSKSRSSSRSHRG 265
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS ++R R + K RS+S G
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASS---G 71
Query: 266 SSSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
SSS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 72 SSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Score = 43.1 bits (100), Expect = 3e-04
Identities = 45/155 (29%), Positives = 63/155 (40%), Gaps = 28/155 (18%)
Query: 132 KKYRGKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDED--------------- 176
KK +A P K + + + ++ +D+ +K ++D D
Sbjct: 19 KKSSTRAPSPT---KRKDRSDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSST 75
Query: 177 ---DADLSKYNLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSS---SPSSSRSRSRSR 230
+ S S S S+ SRS S SS SRSSS SS SPS SR R +R
Sbjct: 76 RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS-SSTSRSSSSSSSSGSPSPSRRRHDNR 134
Query: 231 SRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRG 265
RS S S+ R E+ R R S S ++ H G
Sbjct: 135 RRSRSKSKPPKRD---EKERKRRSPSPKPTKVHIG 166
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
RS R R S SPR+RS S SP R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 34.3 bits (77), Expect = 0.15
Identities = 20/41 (48%), Positives = 24/41 (58%)
Query: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
++S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 264 RRSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 30.0 bits (66), Expect = 2.9
Identities = 24/48 (50%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 220 PSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSK---SRSSSRSHR 264
P RS R R RS S R RS R RSRS G + SRSSS S R
Sbjct: 261 PMWRRSPPRMRRRSRSP---RRRSPVRRRSRSPGRRRHRSRSSSNSSR 305
Score = 28.5 bits (62), Expect = 8.3
Identities = 20/39 (51%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSS 245
R S R RS SP RS R RSRS + RSRSSS
Sbjct: 264 RRSPPRMRRRSRSPRR-RSPVRRRSRSPGRRRHRSRSSS 301
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 75.5 bits (184), Expect = 6e-14
Identities = 49/131 (37%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Query: 189 EEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRER 248
E + K +S R R+++++S SRS S SSS SSS S S S SSSS S SRSSS
Sbjct: 551 ESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610
Query: 249 SRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR-SRSRSSSSGDRKKRRTRSRS 307
S + GS SR SS S SS R RS + ++R+ R R +SG + ++
Sbjct: 611 SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGG 670
Query: 308 PESQVIGENTK 318
G K
Sbjct: 671 SSRDTKGSKDK 681
Score = 75.1 bits (183), Expect = 8e-14
Identities = 62/146 (42%), Positives = 69/146 (47%), Gaps = 29/146 (19%)
Query: 193 SNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSR 252
+ K S RSRS S SS S SS+ SSS SSS S S S SSSSS S S SSSR+ S S
Sbjct: 566 ARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSST 625
Query: 253 GSKSRSSSRSH-RGSSSPRK----------------RSYSSSSSSPER------------ 283
S S S SRS RG + RK RS+ SS R
Sbjct: 626 SSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRS 685
Query: 284 NRKRSRSRSSSSGDRKKRRTRSRSPE 309
+RKRS S SS SG R R R R +
Sbjct: 686 DRKRSISESSRSGKRSSRSERDRKSD 711
Score = 67.4 bits (163), Expect = 2e-11
Identities = 50/105 (47%), Positives = 58/105 (55%), Gaps = 9/105 (8%)
Query: 210 HSRSSSRSSSPSSSRSR-------SRSRSRSSSSSQSRSRSSSRERSRSRG-SKSRSSSR 261
H S S++ + S SR R SRSRS SSSSS S S SSS S S G S SRSSS
Sbjct: 549 HPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSS 608
Query: 262 SHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSR 306
S +S R SSS+SS +R RSR R + DRK RR+ R
Sbjct: 609 SSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNR-DRKHRRSVDR 652
Score = 66.6 bits (161), Expect = 3e-11
Identities = 55/171 (32%), Positives = 75/171 (43%), Gaps = 10/171 (5%)
Query: 139 VGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKS 198
V P S K S G ++ S+ + + S + +S S+ + S
Sbjct: 548 VHPESKSKTKTRSRSRGRARNKTSK-SRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSS 606
Query: 199 NRRSRSKSRSSHSRSSSRSSSPSSSRSRSR----SRSRSSSSSQSRSRSSSRERSRSRGS 254
+ S S S SS SSS +SS S SRSRSR +R R S R R + RS S
Sbjct: 607 SSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKS 666
Query: 255 KSRSSSRSHRGSS-----SPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK 300
SSR +GS S RKRS S SS S +R+ + R R S D+++
Sbjct: 667 SKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR 717
Score = 37.7 bits (86), Expect = 0.014
Identities = 29/123 (23%), Positives = 42/123 (34%), Gaps = 1/123 (0%)
Query: 136 GKAVGPASILKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNK 195
G + S S D S E + +N D ++
Sbjct: 593 GSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDR 652
Query: 196 KKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRS-SSSSQSRSRSSSRERSRSRGS 254
K+ + +S S SSR + S ++ R RS S SS+S RSS ER R
Sbjct: 653 KRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDR 712
Query: 255 KSR 257
K +
Sbjct: 713 KDK 715
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 75.1 bits (183), Expect = 8e-14
Identities = 64/171 (37%), Positives = 88/171 (51%), Gaps = 20/171 (11%)
Query: 145 LKEVEDKESEGEEEDEDEDLSKYKLDEDEDEDDADLSKYNLDASEEEDSNKKKSNR-RSR 203
L V+ K G +E+ + ++ + + SK D S+++ + K+ S + R R
Sbjct: 3 LSGVKKKSLLGVKENNKKSSTRAPSPTKRKDRSDEKSK---DRSKDKGATKESSEKDRGR 59
Query: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSH 263
K+R HS SS SS+ RSRS S SSS S + + SSS S S S+S SSS S
Sbjct: 60 DKTRKRHSASSGSSST------RSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR 113
Query: 264 RGSSSPRKRSYSSSSSSPER----NRKRSRSRSS-SSGDRKKRRTRSRSPE 309
SSS SS S SP R NR+RSRS+S D K+R+ RS SP+
Sbjct: 114 SSSSSS-----SSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPSPK 159
Score = 54.3 bits (129), Expect = 1e-07
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 207 RSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGS 266
+ ++ +SS+R+ SP+ + RS +S+ S + ++ SS E+ R R K+R + GS
Sbjct: 15 KENNKKSSTRAPSPTKRKDRSDEKSKDRSKDKGATKESS-EKDRGR-DKTRKRHSASSGS 72
Query: 267 SSPRKRSYSSSSS-SPERNRKRSRSRSSSSGDRKKRRTRSRSPES 310
SS R RS S+SSS S S S SSS+ R + SRS S
Sbjct: 73 SSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Score = 43.5 bits (101), Expect = 2e-04
Identities = 40/121 (33%), Positives = 52/121 (42%), Gaps = 10/121 (8%)
Query: 151 KESEGEEEDEDEDLSKYKLDEDEDED---DADLSKYNLDASEEEDSNKKKSNRRSRSKSR 207
KES ++ D+ ++ + S S S S+ SRS S
Sbjct: 50 KESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGS- 108
Query: 208 SSHSRSSSRSS---SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHR 264
SS SRSSS SS SPS SR R +R RS S S+ R E+ R R S S ++ H
Sbjct: 109 SSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRD---EKERKRRSPSPKPTKVHI 165
Query: 265 G 265
G
Sbjct: 166 G 166
Score = 35.0 bits (79), Expect = 0.089
Identities = 22/40 (55%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 257 RSSSRSHRGSSSPRKRS-YSSSSSSPERNRKRSRSRSSSS 295
RS R R S SPR+RS S SP R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 33.5 bits (75), Expect = 0.26
Identities = 20/40 (50%), Positives = 23/40 (57%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSS 236
+S R R +SRS RS R S S R R RSRS S+SS
Sbjct: 265 RSPPRMRRRSRSPRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 31.2 bits (69), Expect = 1.3
Identities = 20/40 (50%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 219 SPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRS 258
SP R RSRS R S + RSRS R R RSR S + S
Sbjct: 266 SPPRMRRRSRS-PRRRSPVRRRSRSPGRRRHRSRSSSNSS 304
Score = 28.9 bits (63), Expect = 6.4
Identities = 20/41 (48%), Positives = 22/41 (53%), Gaps = 6/41 (14%)
Query: 197 KSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSS 237
+ RRSRS R S R SRS R R RSRSSS+S
Sbjct: 269 RMRRRSRSPRRRSPVRRRSRSPG------RRRHRSRSSSNS 303
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.302 0.118 0.321
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,642,747
Number of Sequences: 37866
Number of extensions: 653443
Number of successful extensions: 38845
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 1036
Number of HSP's that attempted gapping in prelim test: 7708
Number of HSP's gapped (non-prelim): 13158
length of query: 320
length of database: 18,247,518
effective HSP length: 102
effective length of query: 218
effective length of database: 14,385,186
effective search space: 3135970548
effective search space used: 3135970548
T: 11
A: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.