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Search of human proteins with 126362983
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|126362983 ribosomal RNA processing 15 homolog [Homo sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|126362983 ribosomal RNA processing 15 homolog [Homo sapiens] 561 e-160
gi|5453567 craniofacial development protein 1 [Homo sapiens] 50 3e-06
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 49 6e-06
gi|55749769 CWC22 spliceosome-associated protein homolog [Homo s... 46 3e-05
gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens] 44 2e-04
gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens] 44 2e-04
gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo sa... 43 4e-04
gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo s... 43 4e-04
gi|84043963 eukaryotic translation initiation factor 5B [Homo sa... 41 0.001
gi|55956788 nucleolin [Homo sapiens] 40 0.003
gi|155722990 solute carrier family 4 (anion exchanger), member 1... 40 0.003
gi|124517695 ankyrin repeat domain 36B [Homo sapiens] 40 0.003
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 39 0.004
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 39 0.004
gi|115298682 HBxAg transactivated protein 2 [Homo sapiens] 39 0.007
gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo ... 38 0.009
gi|40807471 transcription termination factor, RNA polymerase II ... 38 0.009
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 38 0.009
gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo sa... 37 0.015
gi|41406057 amyloid beta A4 protein isoform c precursor [Homo sa... 37 0.015
gi|209915570 amyloid beta A4 protein isoform e precursor [Homo s... 37 0.015
gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens] 37 0.015
gi|151301171 RNA polymerase II transcription factor TAFII140 [Ho... 37 0.015
gi|4504487 histidine rich calcium binding protein precursor [Hom... 37 0.015
gi|55770898 Rho GTPase activating protein 25 isoform a [Homo sap... 37 0.015
gi|7661882 Rho GTPase activating protein 25 isoform b [Homo sapi... 37 0.015
gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1 ... 37 0.015
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso... 37 0.015
gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1 ... 37 0.015
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso... 37 0.015
>gi|126362983 ribosomal RNA processing 15 homolog [Homo sapiens]
Length = 282
Score = 561 bits (1445), Expect = e-160
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDD 60
MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDD
Sbjct: 1 MAAAAPDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDD 60
Query: 61 DAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEK 120
DAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEK
Sbjct: 61 DAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEK 120
Query: 121 EKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKH 180
EKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKH
Sbjct: 121 EKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKH 180
Query: 181 QKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKS 240
QKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKS
Sbjct: 181 QKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKS 240
Query: 241 EEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSDT 282
EEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSDT
Sbjct: 241 EEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSDT 282
>gi|5453567 craniofacial development protein 1 [Homo sapiens]
Length = 299
Score = 49.7 bits (117), Expect = 3e-06
Identities = 64/252 (25%), Positives = 100/252 (39%), Gaps = 42/252 (16%)
Query: 7 DSRVSEEENLKKTPKKKMKMVT--------GAVASVLEDEATDTSDSEGSCGSEKDHFYS 58
+ V EE +KT KK K + G ++ E+E S+SEGS E
Sbjct: 36 EDEVDGEEQTQKTQGKKRKAQSIPARKRRQGGLSLEEEEEEDANSESEGSSSEE------ 89
Query: 59 DDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKL 118
+DDA E + +E K+ E+ + A LN P+SK + KK
Sbjct: 90 EDDAAEQEKGIGSEDARKKKED-------------ELWASFLNDVGPKSKVPPSTQVKKG 136
Query: 119 EKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLF---N 175
E+ +E + L K ++ +K E E + K +E + AT + F N
Sbjct: 137 EETEETSSSKLLVKAEELEKPKETEKVKITKVFDFAGEEVRVTKEVDATSKEAKSFFKQN 196
Query: 176 AVQKHQKNVDEKVKE--AGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKA 233
+K Q NV + AGS +++ + + S L G G+ + S+ +K K
Sbjct: 197 EKEKPQANVPSALPSLPAGSGLKRSSGM----------SSLLGKIGAKKQKMSTLEKSKL 246
Query: 234 KQTEVKSEEGPG 245
K EEG G
Sbjct: 247 DWESFKEEEGIG 258
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 48.5 bits (114), Expect = 6e-06
Identities = 48/216 (22%), Positives = 98/216 (45%), Gaps = 13/216 (6%)
Query: 64 EADSEGDAEPCDKEN---ENDGESSVGTNMGWADAMAKVLNKK----TPESKPTILVKNK 116
E ++E +AE ++ E + + + T + AKV +K +PES+P + +
Sbjct: 1001 EREAEKEAERLMEQASCWEKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGERGQ 1060
Query: 117 KLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNA 176
LE KE ++E E+ ++ ++ E E + + +++E E N+Q R A
Sbjct: 1061 LLELSKESSEEEEEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEENIQSSPPRLTKPQSVA 1120
Query: 177 VQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQT 236
+++ + V +K + RKR ++ S+V+ + ++ + + R P+ + T
Sbjct: 1121 IKRKRPFVLKKKRG-----RKRRRINSSVTTETISETTEVLNEPFDNSDEERPMPQLEPT 1175
Query: 237 -EVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDD 271
E++ EE +LR F K +E +G D+
Sbjct: 1176 CEIEVEEDGRKPVLRKAFQHQPGKKRQTEEEEGKDN 1211
>gi|55749769 CWC22 spliceosome-associated protein homolog [Homo
sapiens]
Length = 908
Score = 46.2 bits (108), Expect = 3e-05
Identities = 60/276 (21%), Positives = 117/276 (42%), Gaps = 31/276 (11%)
Query: 14 ENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEP 73
E+LK TPK ++ V +++++ +S S S SE D SD D+ ++ SE +E
Sbjct: 645 EHLKNTPK----VIVAQKPDVEQNKSSPSSSSSASSSSESDSSDSDSDSSDSSSESSSE- 699
Query: 74 CDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKI 133
E+D S + A+ + K + KT + L++N++ K+K ER ++
Sbjct: 700 -----ESDSSSISSHSSASANDVRKKGHGKTRSKEVDKLIRNQQTNDRKQK---ERRQEH 751
Query: 134 KQRDKRLEWEMMCRVKPDVVQDKETERN--LQRIATRGVVQLFNAVQKHQKNVDEKV--- 188
++ R E E D R+ + + + V N + + D+++
Sbjct: 752 GHQETRTERERRSEKHRDQNSSGSNWRDPITKYTSDKDVPSERNNYSRVANDRDQEMHID 811
Query: 189 --KEAGSSMRKRAKLISTVSKKD-FISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPG 245
+ G +KR + ++ S+ + ++ + + S K+ K + +S+E
Sbjct: 812 LENKHGDPKKKRGERRNSFSENEKHTHRIKDSENFRRKDRSKSKEMNRKHSGSRSDE--- 868
Query: 246 WTILRDDFMMGASMKDWDKESDGPDDSRPESASDSD 281
D + GA + W+K S + SR ES + D
Sbjct: 869 -----DRYQNGAERR-WEKSSRYSEQSR-ESKKNQD 897
>gi|55769548 PHD finger protein 14 isoform 2 [Homo sapiens]
Length = 888
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 25/271 (9%)
Query: 23 KMKMVTGAVASVLEDEATDTSD-SEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENEND 81
K + V AS+LE D+SD S+ G D S + + +A + C EN
Sbjct: 6 KRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDASKDSGEGSCSDSEENI 65
Query: 82 GESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLE-----------KEKEKLKQERL 130
E + ++ + K ++ S L+K +K E KEKEK K++
Sbjct: 66 LEEELNEDIKVKEEQLKNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEK 125
Query: 131 EKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATR-GVVQLFNAVQKHQKNVDEKVK 189
EK K+R+K E K V ++ AT V +V +E+V
Sbjct: 126 EKEKEREKEKE-------KATVSENVAASAAATTPATSPPAVNTSPSVPTTTTATEEQVS 178
Query: 190 EAGS-SMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTI 248
E ++R+ L+ VS ++ L MD +E + + K+ + + G
Sbjct: 179 EPKKWNLRRNRPLLDFVSMEE----LNDMDDYDSEDDNDWRPTVVKRKGRSASQKEGSDG 234
Query: 249 LRDDFMMGASMKDWDKESDGPDDSRPESASD 279
+D S D D+ +G D+ AS+
Sbjct: 235 DNEDDEDEGSGSDEDENDEGNDEDHSSPASE 265
>gi|55769550 PHD finger protein 14 isoform 1 [Homo sapiens]
Length = 948
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/271 (23%), Positives = 105/271 (38%), Gaps = 25/271 (9%)
Query: 23 KMKMVTGAVASVLEDEATDTSD-SEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENEND 81
K + V AS+LE D+SD S+ G D S + + +A + C EN
Sbjct: 6 KRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDASKDSGEGSCSDSEENI 65
Query: 82 GESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLE-----------KEKEKLKQERL 130
E + ++ + K ++ S L+K +K E KEKEK K++
Sbjct: 66 LEEELNEDIKVKEEQLKNSAEEEVLSSEKQLIKMEKKEEEENGERPRKKKEKEKEKEKEK 125
Query: 131 EKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATR-GVVQLFNAVQKHQKNVDEKVK 189
EK K+R+K E K V ++ AT V +V +E+V
Sbjct: 126 EKEKEREKEKE-------KATVSENVAASAAATTPATSPPAVNTSPSVPTTTTATEEQVS 178
Query: 190 EAGS-SMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTI 248
E ++R+ L+ VS ++ L MD +E + + K+ + + G
Sbjct: 179 EPKKWNLRRNRPLLDFVSMEE----LNDMDDYDSEDDNDWRPTVVKRKGRSASQKEGSDG 234
Query: 249 LRDDFMMGASMKDWDKESDGPDDSRPESASD 279
+D S D D+ +G D+ AS+
Sbjct: 235 DNEDDEDEGSGSDEDENDEGNDEDHSSPASE 265
>gi|94680976 coiled-coil domain containing 112 isoform 1 [Homo
sapiens]
Length = 529
Score = 42.7 bits (99), Expect = 4e-04
Identities = 40/193 (20%), Positives = 90/193 (46%), Gaps = 20/193 (10%)
Query: 98 KVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIK----QRDKRLEWEMMC--RVKPD 151
++ K +L NK+ + +K+K +Q + +K+ ++ K +E M C ++K +
Sbjct: 321 EIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLKEE 380
Query: 152 VVQDKETERNLQR-IATRGVVQLFNAVQKHQK---NVDEKVKEAGSSMRKR---AKLIST 204
++K+ ++ QR + +++ + +K Q+ ++++++E KR A IS
Sbjct: 381 EEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKEIREKAEKAEKRKNAADEISR 440
Query: 205 VSKKDFISV-LRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWD 263
++D + L+ +D E S+K+ + + + K E + RD + K W+
Sbjct: 441 FQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVEN----NVSRDPSRLYKPTKGWE 496
Query: 264 KESD--GPDDSRP 274
+ + GP S P
Sbjct: 497 ERTKKIGPTGSGP 509
>gi|145580595 coiled-coil domain containing 112 isoform 2 [Homo
sapiens]
Length = 446
Score = 42.7 bits (99), Expect = 4e-04
Identities = 40/193 (20%), Positives = 90/193 (46%), Gaps = 20/193 (10%)
Query: 98 KVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIK----QRDKRLEWEMMC--RVKPD 151
++ K +L NK+ + +K+K +Q + +K+ ++ K +E M C ++K +
Sbjct: 238 EIFKLKEKADNTPVLFHNKQEDNQKQKEEQRKKQKLAVEAWKKQKSIEMSMKCASQLKEE 297
Query: 152 VVQDKETERNLQR-IATRGVVQLFNAVQKHQK---NVDEKVKEAGSSMRKR---AKLIST 204
++K+ ++ QR + +++ + +K Q+ ++++++E KR A IS
Sbjct: 298 EEKEKKHQKERQRQFKLKLLLESYTQQKKEQEEFLRLEKEIREKAEKAEKRKNAADEISR 357
Query: 205 VSKKDFISV-LRGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWD 263
++D + L+ +D E S+K+ + + + K E + RD + K W+
Sbjct: 358 FQERDLHKLELKILDRQAKEDEKSQKQRRLAKLKEKVEN----NVSRDPSRLYKPTKGWE 413
Query: 264 KESD--GPDDSRP 274
+ + GP S P
Sbjct: 414 ERTKKIGPTGSGP 426
>gi|84043963 eukaryotic translation initiation factor 5B [Homo
sapiens]
Length = 1220
Score = 40.8 bits (94), Expect = 0.001
Identities = 42/169 (24%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 11 SEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGD 70
S+ + ++T K K+ + TG + + E T T+ + + G +K + +G+
Sbjct: 272 SQRKFEEETVKSKVTVDTGVIPASEEKAETPTAAEDDNEGDKKKKD-------KKKKKGE 324
Query: 71 AEPCDKENENDGESSVGTNMGWADAMAKVLN-----KKTPESKPTILVKNKKLEKEKEKL 125
E +KE E S T +A+AK+ K+ E + L + + KE+E+L
Sbjct: 325 KE--EKEKEKKKGPSKATVKAMQEALAKLKEEEERQKREEEERIKRLEELEAKRKEEERL 382
Query: 126 KQERLEKIKQRDK----RLEWEMMCRVKPDVVQDKETERNLQRIATRGV 170
+QE+ E+ KQ++K RL+ E K E L+ + +GV
Sbjct: 383 EQEKRERKKQKEKERKERLKKEGKLLTKSQREARARAEATLKLLQAQGV 431
Score = 32.0 bits (71), Expect = 0.63
Identities = 50/226 (22%), Positives = 91/226 (40%), Gaps = 54/226 (23%)
Query: 36 EDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADA 95
E+E + +SEGS G E+D SD+ ++ D +P KE +D E
Sbjct: 548 EEEEEEEGESEGSEGDEEDEKVSDEK--DSGKTLDKKP-SKEMSSDSEY----------- 593
Query: 96 MAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQ-RDKRLEWEMMC-------- 146
+S + + +K K ++++ RLE K ++L ++C
Sbjct: 594 ----------DSDDDRTKEERAYDKAKRRIEKRRLEHSKNVNTEKLRAPIICVLGHVDTG 643
Query: 147 ------RVKPDVVQDKETERNLQRI-ATRGVVQLFNAVQKHQKNVD-EKVK--------- 189
+++ VQD E Q+I AT ++ N K KN D E V+
Sbjct: 644 KTKILDKLRHTHVQDGEAGGITQQIGATNVPLEAINEQTKMIKNFDRENVRIPGMLIIDT 703
Query: 190 ---EAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPK 232
E+ S++R R + ++ + ++ G++ T E+ + K K
Sbjct: 704 PGHESFSNLRNRGSSLCDIAIL-VVDIMHGLEPQTIESINLLKSKK 748
Score = 28.9 bits (63), Expect = 5.3
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 25/135 (18%)
Query: 44 DSEGSCGSEKDHFYSDDDAIEADSEGDAEP-CDKENENDGESSVGTNMGWADAMAKVLNK 102
+S G G E D F + + + P + NE+D DA K+
Sbjct: 181 NSSGESGDESDEFLQSRKGQKKNQKNKPGPNIESGNEDD------------DASFKI--- 225
Query: 103 KTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNL 162
KT V KK EK++ + K+ EK K R K E E + K D + KE++R
Sbjct: 226 KT--------VAQKKAEKKERERKKRDEEKAKLR-KLKEKEELETGKKDQSKQKESQRKF 276
Query: 163 QRIATRGVVQLFNAV 177
+ + V + V
Sbjct: 277 EEETVKSKVTVDTGV 291
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 39.7 bits (91), Expect = 0.003
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 3/119 (2%)
Query: 11 SEEENLKKTP---KKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADS 67
SEEE ++ TP KK K+V +V EDE + D + ++D DD+ E +
Sbjct: 206 SEEEAMETTPAKGKKAAKVVPVKAKNVAEDEDEEEDDEDEDDDDDEDDEDDDDEDDEEEE 265
Query: 68 EGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLK 126
E + E KE + + +A + + P + + V N K +LK
Sbjct: 266 EEEEEEPVKEAPGKRKKEMAKQKAAPEAKKQKVEGTEPTTAFNLFVGNLNFNKSAPELK 324
>gi|155722990 solute carrier family 4 (anion exchanger), member 1,
adaptor protein [Homo sapiens]
Length = 796
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 20/148 (13%)
Query: 100 LNKKTPESKPTIL-VKNK-KLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKE 157
L K PE PT++ +K++ ++E+E+E+ ++E EK + K+LE + R +P++ E
Sbjct: 627 LPPKRPELPPTLMRMKDEPEVEEEEEEEEEEEKEKEEHEKKKLEDGSLSRPQPEI----E 682
Query: 158 TERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGM 217
E +Q + + F Q H+ +E + +K S+ G
Sbjct: 683 PEAAVQEMRPPTDLTHFKETQTHENMSQLSEEEQNKDYQDCSKT---------TSLCAGP 733
Query: 218 DGSTNETASSRKKPKAKQTEVKSEEGPG 245
S NE SR + K K+T GPG
Sbjct: 734 SASKNEYEKSRGELKKKKT-----PGPG 756
>gi|124517695 ankyrin repeat domain 36B [Homo sapiens]
Length = 1121
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/224 (20%), Positives = 87/224 (38%), Gaps = 12/224 (5%)
Query: 29 GAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGT 88
G V+S + T+D EGS + + + S+ +E D S++
Sbjct: 157 GTVSSQKQQALKATTDEEGSVSNIATEIKDGEKSGTVSSQKKPALKATSDEKDSFSNITR 216
Query: 89 NMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIK---------QRDKR 139
+ V ++K P K T + ++ L +EK E+ + RD++
Sbjct: 217 EKKDGEISRTVSSQKPPALKATSVKEDSVLNIAREKKDGEKSRTVSFEQPPGLKATRDEK 276
Query: 140 LEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRA 199
+ R K D + + + Q + + ++V ++ S +K+
Sbjct: 277 DSLLNIARGKKDGEKTRRVSSHKQP-SLKATSDKEDSVPNMATETKDEQISGTVSCQKQP 335
Query: 200 KLISTVSKKDFISVLRG--MDGSTNETASSRKKPKAKQTEVKSE 241
L +T KKD +S + DG + T SS+K+P K T VK +
Sbjct: 336 ALKATSDKKDSVSNIPTEIKDGQQSGTVSSQKQPAWKATSVKKD 379
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 39.3 bits (90), Expect = 0.004
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 114 KNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQR---IATRGV 170
KNK +KE+EK +++ EK ++R++ E E + + QDKE ER R I +
Sbjct: 413 KNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRK 472
Query: 171 VQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRK- 229
+ N + + + R+R S+ S + ++ R S + + ++K
Sbjct: 473 KDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKD 532
Query: 230 KPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESAS 278
K + K+ + SE R + SM+ + DG + S S
Sbjct: 533 KKREKERDHISE--------RRERERSTSMRKSSNDRDGKEKLEKNSTS 573
Score = 38.1 bits (87), Expect = 0.009
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 94 DAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVV 153
D K+ K+ + K + K+ E+EKE+ K++ K K RDK E D
Sbjct: 379 DTREKIKEKERVKEKD----REKEREREKEREKEKERGKNKDRDKERE--------KDRE 426
Query: 154 QDKETERNLQRIATRGVVQLFNAVQKHQKNVD-EKVKEAGSSMRK---RAKLISTVSKKD 209
+DKE +R +R ++H+K+ D EK KE + R+K I KKD
Sbjct: 427 KDKEKDRERER------------EKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKD 474
Query: 210 FISVL--RGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILR 250
S R + S +SSR++ + + TI R
Sbjct: 475 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR 517
Score = 36.6 bits (83), Expect = 0.025
Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 26/224 (11%)
Query: 64 EADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKE 123
E D E + E +E E + E G N K K + + K + +++KE
Sbjct: 392 EKDREKERE---REKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKE 448
Query: 124 KLKQERLEKIKQRDKRLE------WEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAV 177
K K++ EK +++D+ E + R P R+ R R + +
Sbjct: 449 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRS 508
Query: 178 QKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTE 237
+ K + K + S + K ++D IS R + ST+ SS + ++ E
Sbjct: 509 PRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLE 568
Query: 238 VKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSD 281
S T L++ K+ +KE PD S + D D
Sbjct: 569 KNS------TSLKE--------KEHNKE---PDSSVSKEVDDKD 595
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 39.3 bits (90), Expect = 0.004
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 12/169 (7%)
Query: 114 KNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQR---IATRGV 170
KNK +KE+EK +++ EK ++R++ E E + + QDKE ER R I +
Sbjct: 297 KNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRK 356
Query: 171 VQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRK- 229
+ N + + + R+R S+ S + ++ R S + + ++K
Sbjct: 357 KDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKD 416
Query: 230 KPKAKQTEVKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESAS 278
K + K+ + SE R + SM+ + DG + S S
Sbjct: 417 KKREKERDHISE--------RRERERSTSMRKSSNDRDGKEKLEKNSTS 457
Score = 38.1 bits (87), Expect = 0.009
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 30/163 (18%)
Query: 94 DAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVV 153
D K+ K+ + K + K+ E+EKE+ K++ K K RDK E D
Sbjct: 263 DTREKIKEKERVKEKD----REKEREREKEREKEKERGKNKDRDKERE--------KDRE 310
Query: 154 QDKETERNLQRIATRGVVQLFNAVQKHQKNVD-EKVKEAGSSMRK---RAKLISTVSKKD 209
+DKE +R +R ++H+K+ D EK KE + R+K I KKD
Sbjct: 311 KDKEKDRERER------------EKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKD 358
Query: 210 FISVL--RGMDGSTNETASSRKKPKAKQTEVKSEEGPGWTILR 250
S R + S +SSR++ + + TI R
Sbjct: 359 KKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKTIKR 401
Score = 36.6 bits (83), Expect = 0.025
Identities = 49/224 (21%), Positives = 84/224 (37%), Gaps = 26/224 (11%)
Query: 64 EADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKE 123
E D E + E +E E + E G N K K + + K + +++KE
Sbjct: 276 EKDREKERE---REKEREKEKERGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKE 332
Query: 124 KLKQERLEKIKQRDKRLE------WEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAV 177
K K++ EK +++D+ E + R P R+ R R + +
Sbjct: 333 KEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRS 392
Query: 178 QKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTE 237
+ K + K + S + K ++D IS R + ST+ SS + ++ E
Sbjct: 393 PRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLE 452
Query: 238 VKSEEGPGWTILRDDFMMGASMKDWDKESDGPDDSRPESASDSD 281
S T L++ K+ +KE PD S + D D
Sbjct: 453 KNS------TSLKE--------KEHNKE---PDSSVSKEVDDKD 479
>gi|115298682 HBxAg transactivated protein 2 [Homo sapiens]
Length = 2817
Score = 38.5 bits (88), Expect = 0.007
Identities = 44/250 (17%), Positives = 109/250 (43%), Gaps = 27/250 (10%)
Query: 9 RVSEEENLKKTPKKKMKMVTGAVASVL---EDEATDTSDSEGSCGSEKDHFYSDDDAIEA 65
+V++E+ + K +++ ++ AV E+E + + +EK + I
Sbjct: 437 QVADEDEIWKQRRRQQSEISAAVERARKRREEEERRMEEQRKAACAEKLKRLDEKLGILE 496
Query: 66 DSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKL 125
E ++E E + E K L K+ + + K ++ ++E+++
Sbjct: 497 KQPSPEEIREREREKERERE------------KELEKEQEQERE----KEREKDRERQQE 540
Query: 126 KQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVD 185
K++ LEK +++ + +E E + ++ + KE E+ LQ++ + + ++K ++ ++
Sbjct: 541 KEKELEKEQEKQREMEKERKQEKEKELERQKEKEKELQKMKEQ---EKECELEKEREKLE 597
Query: 186 EKVKEAGSSMRKRAKLISTVS--KKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEG 243
EK++ ++ + + + K+ V D + +E ++ P +TE +S
Sbjct: 598 EKIEPREPNLEPMVEKQESENSCNKEEEPVFTRQDSNRSEKEAT---PVVHETEPESGSQ 654
Query: 244 PGWTILRDDF 253
P +L F
Sbjct: 655 PRPAVLSGYF 664
>gi|239747134 PREDICTED: hypothetical protein XP_002343921 [Homo
sapiens]
Length = 600
Score = 38.1 bits (87), Expect = 0.009
Identities = 48/206 (23%), Positives = 88/206 (42%), Gaps = 19/206 (9%)
Query: 36 EDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADA 95
E E +D E EK+ + E + EG+ ++ + DG+ DA
Sbjct: 102 EKERERQTDRERDRQREKERNRQKERERETEREGER---GRDRQTDGQRERERQR---DA 155
Query: 96 MAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQD 155
K ++T + +N++ E+E+EK +QER E+ +QR+K + E + ++
Sbjct: 156 -EKERERQTDRERQRQTERNRQKEREREKNRQERRERERQREKENKTEDR---HSERGRE 211
Query: 156 KETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLR 215
+E ER + T Q + +K E+ K+A R+RA T K+ R
Sbjct: 212 RERERETE-TETERKRQTDRERDRQRKTEREREKQA---ERERASERETERDKE-----R 262
Query: 216 GMDGSTNETASSRKKPKAKQTEVKSE 241
+ + R+K + +QT+ K +
Sbjct: 263 ERERDRDRDRDRRQKERERQTDRKRQ 288
Score = 32.3 bits (72), Expect = 0.48
Identities = 42/235 (17%), Positives = 92/235 (39%), Gaps = 11/235 (4%)
Query: 9 RVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSE 68
R E E +T ++ + + E +E SE++ + E D +
Sbjct: 210 RERERERETETETERKRQTDRERDRQRKTEREREKQAERERASERETERDKERERERDRD 269
Query: 69 GDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQE 128
D + KE E + + ++ + + ++ E+E+E+ ++
Sbjct: 270 RDRDRRQKERERQTDRKRQRRTERDRETERKRERQRERERERERNRKRERERERERERER 329
Query: 129 RLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKV 188
+ E + R+K E + + + D ++++T R +R A R + ++ +++ E+
Sbjct: 330 QRETERDREKERERKRKRQTEMDRERNRQTGREGRRQAER---ERERERERDRQSARERE 386
Query: 189 KEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSEEG 243
+ R R K ++KD DG ET R++ K +++E E G
Sbjct: 387 ERERDRDRDRQKERERQTEKD-------RDGQ-RETEKQREREKDRESERGRERG 433
Score = 28.1 bits (61), Expect = 9.0
Identities = 25/129 (19%), Positives = 59/129 (45%), Gaps = 20/129 (15%)
Query: 114 KNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQL 173
+ ++ ++EKE+ +Q E+ +QR+K + KE ER +R RG +
Sbjct: 95 RERQRDREKERERQTDRERDRQREKERN------------RQKERERETEREGERGRDRQ 142
Query: 174 FNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKA 233
+ ++ ++ D + + + R+R + +K+ R + + E R++ +
Sbjct: 143 TDGQRERERQRDAEKERERQTDRERQRQTERNRQKE-----REREKNRQE---RRERERQ 194
Query: 234 KQTEVKSEE 242
++ E K+E+
Sbjct: 195 REKENKTED 203
>gi|40807471 transcription termination factor, RNA polymerase II
[Homo sapiens]
Length = 1162
Score = 38.1 bits (87), Expect = 0.009
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 33/182 (18%)
Query: 72 EPCDKENENDGESSVGT-----NMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLK 126
+P KE+ +S + + W KVL+K + L+K + EK+ +K +
Sbjct: 96 DPDSKEHSVSNKSQHASETFHHSSNWLRNPFKVLDKNQEPALWKQLIKGEGEEKKADKKQ 155
Query: 127 QERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDE 186
+E+ +++ + K + EMM E++L + G+V +K Q V E
Sbjct: 156 REKGDQLFDQKKEQKPEMM-------------EKDL----SSGLVP-----KKKQSVVQE 193
Query: 187 KVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGSTNE----TASSRKKPKAKQTEVKSEE 242
K +E G+ ++ A+ T K+DF S ++ NE +ASS++K K +V+ E
Sbjct: 194 KKQEEGAEIQCEAETGGT-HKRDF-SEIKSQQCQGNELTRPSASSQEKSSGKSQDVQRES 251
Query: 243 GP 244
P
Sbjct: 252 EP 253
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 38.1 bits (87), Expect = 0.009
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 13/190 (6%)
Query: 14 ENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEP 73
EN KK +K + + S + + SC S SD + +DSE
Sbjct: 67 ENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSE----- 121
Query: 74 CDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNK-KLEKEKEKLKQERLEK 132
D+E + N + + + ++ ESK ++ K K K E EKEK + +K
Sbjct: 122 -DEEKKQGKRRKKKKNRSYKSSQSST-HESESESKESVKKKKKSKDETEKEKDVRSLSKK 179
Query: 133 IKQR---DKRLEWEMMCRVK-PDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKV 188
K+ DK L E + VQ K+ R +R + V+ ++H+K+ +K
Sbjct: 180 RKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKK-KKKKQHKKHSKKKK 238
Query: 189 KEAGSSMRKR 198
K++GSS + R
Sbjct: 239 KKSGSSHKSR 248
Score = 34.3 bits (77), Expect = 0.13
Identities = 31/151 (20%), Positives = 67/151 (44%), Gaps = 21/151 (13%)
Query: 7 DSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCG----SEKDHFYSDDDA 62
+S + E KK KK + + + +S ++D+ D E G +K+ Y +
Sbjct: 85 ESSSKKRERKKKRKKKSCRSSSSSSSSDSSSSSSDSEDEEKKQGKRRKKKKNRSYKSSQS 144
Query: 63 IEADSEGDA-EPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKP------------ 109
+SE ++ E K+ ++ E+ ++ +++K K P+ KP
Sbjct: 145 STHESESESKESVKKKKKSKDETEKEKDV---RSLSKKRKKSYPDDKPLSSESSSESDYE 201
Query: 110 -TILVKNKKLEKEKEKLKQERLEKIKQRDKR 139
+ K K+ +E+E+ K++ +K K++ K+
Sbjct: 202 EDVQAKKKRRCEEREQAKEKVKKKKKKQHKK 232
>gi|222418637 golgi autoantigen, golgin subfamily a-like [Homo
sapiens]
Length = 750
Score = 37.4 bits (85), Expect = 0.015
Identities = 30/144 (20%), Positives = 71/144 (49%), Gaps = 15/144 (10%)
Query: 102 KKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERN 161
+K E + I + KK+ +++EK+ ++ EKI++ +KR E E M R + + + +E R
Sbjct: 437 EKIREQEEKIREQEKKMWRQEEKIHEQ--EKIREEEKRQEQEEMWRQEEKIHEQEEIWRQ 494
Query: 162 LQRIATRGVVQLFNAVQKHQKNV---DEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMD 218
+++ + ++K ++ V +EK++E +R++ + + +K +R +
Sbjct: 495 KEKMHEQE-----EKIRKQEEKVWRQEEKIREQEEKIREQEEKMWRQEEK-----IREQE 544
Query: 219 GSTNETASSRKKPKAKQTEVKSEE 242
E ++ K + E + E+
Sbjct: 545 EMWREEEKMHEQEKIWEEEKRQEQ 568
Score = 35.0 bits (79), Expect = 0.074
Identities = 26/142 (18%), Positives = 64/142 (45%), Gaps = 1/142 (0%)
Query: 102 KKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERN 161
+K E + I + +K+ +++EK++++ + +Q + E E R + +++ +KE +
Sbjct: 307 EKIQEWEEKIQEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEKMR 366
Query: 162 LQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDGST 221
Q + ++ +EK++E M ++ K+ K+ +R +
Sbjct: 367 RQEEMMWEKEEKMRRQEEMMWEKEEKIRELEEKMHEQEKIREQEEKRQEEEKIREQEKRQ 426
Query: 222 NETASS-RKKPKAKQTEVKSEE 242
+ A R++ K ++ E K E
Sbjct: 427 EQEAKMWRQEEKIREQEEKIRE 448
Score = 33.1 bits (74), Expect = 0.28
Identities = 27/143 (18%), Positives = 73/143 (51%), Gaps = 14/143 (9%)
Query: 101 NKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRL-EWEMMCRVKPDVVQDKETE 159
N+ + + + + +K+++ +EK+ QE+ EKI+++++++ E E R + +++ +KE +
Sbjct: 292 NRLNQQQEEKMWRQEEKIQEWEEKI-QEQEEKIREQEEKIREQEEKMRRQEEMMWEKEEK 350
Query: 160 RNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGMDG 219
Q ++ ++ + +E + E MR++ +++ +K +R ++
Sbjct: 351 MRRQE-------EMMWEKEEKMRRQEEMMWEKEEKMRRQEEMMWEKEEK-----IRELEE 398
Query: 220 STNETASSRKKPKAKQTEVKSEE 242
+E R++ + +Q E K E
Sbjct: 399 KMHEQEKIREQEEKRQEEEKIRE 421
Score = 30.8 bits (68), Expect = 1.4
Identities = 18/107 (16%), Positives = 51/107 (47%)
Query: 92 WADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPD 151
W + + K + I + +K+ +++EK++++ ++ +Q +K + E R + +
Sbjct: 560 WEEEKRQEQEDKMWRQEEKIREQEEKVWRQEEKIREQEEKRQEQEEKMWKQEEKIREQEE 619
Query: 152 VVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKR 198
+Q++E + Q R ++ ++ +EK+ E M+++
Sbjct: 620 KIQEQEEKIREQEEKIREQEEMTQEQEEKMGEQEEKMCEQEEKMQEQ 666
>gi|41406057 amyloid beta A4 protein isoform c precursor [Homo
sapiens]
Length = 695
Score = 37.4 bits (85), Expect = 0.015
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 31 VASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNM 90
VA V E+EA D D E D D +E ++E EP ++ E + T
Sbjct: 234 VAEVEEEEADDDEDDE------------DGDEVEEEAE---EPYEEATERTTSIATTTTT 278
Query: 91 GWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKP 150
V T S P + +K LE ++ + +K K+R + E M +V
Sbjct: 279 TTESVEEVVRVPTTAASTPDAV--DKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMR 336
Query: 151 DVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLIST 204
+ + + +NL + + V+Q F Q+ V+ +EA + +R +L+ T
Sbjct: 337 EWEEAERQAKNLPKADKKAVIQHF------QEKVESLEQEAAN---ERQQLVET 381
>gi|209915570 amyloid beta A4 protein isoform e precursor [Homo
sapiens]
Length = 639
Score = 37.4 bits (85), Expect = 0.015
Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 26/174 (14%)
Query: 31 VASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNM 90
VA V E+EA D D E D D +E ++E EP ++ E + T
Sbjct: 178 VAEVEEEEADDDEDDE------------DGDEVEEEAE---EPYEEATERTTSIATTTTT 222
Query: 91 GWADAMAKVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKP 150
V T S P + +K LE ++ + +K K+R + E M +V
Sbjct: 223 TTESVEEVVRVPTTAASTPDAV--DKYLETPGDENEHAHFQKAKERLEAKHRERMSQVMR 280
Query: 151 DVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLIST 204
+ + + +NL + + V+Q F Q+ V+ +EA + +R +L+ T
Sbjct: 281 EWEEAERQAKNLPKADKKAVIQHF------QEKVESLEQEAAN---ERQQLVET 325
>gi|4885399 structural maintenance of chromosomes 3 [Homo sapiens]
Length = 1217
Score = 37.4 bits (85), Expect = 0.015
Identities = 43/167 (25%), Positives = 70/167 (41%), Gaps = 23/167 (13%)
Query: 77 ENENDGESSVGTNMGWADAMAKV--LNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIK 134
+ E GE S DA K+ + ++ E K I +++EKE+L ER E+IK
Sbjct: 245 KRETSGEKSRQLRDAQQDARDKMEDIERQVRELKTKI----SAMKEEKEQLSAERQEQIK 300
Query: 135 QRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQKNVDEKVKEAGSS 194
QR K +K +QD+ + QR +L QK + ++EK KE +
Sbjct: 301 QRTK-------LELKAKDLQDELAGNSEQR------KRLLKERQKLLEKIEEKQKELAET 347
Query: 195 MRKRAKLISTVSKKDFISVLRGMDGSTNETASSRKKPKAKQTEVKSE 241
K ++V +K+ + R + T K+ + Q K E
Sbjct: 348 EPK----FNSVKEKEERGIARLAQATQERTDLYAKQGRGSQFTSKEE 390
>gi|151301171 RNA polymerase II transcription factor TAFII140 [Homo
sapiens]
Length = 929
Score = 37.4 bits (85), Expect = 0.015
Identities = 62/264 (23%), Positives = 99/264 (37%), Gaps = 34/264 (12%)
Query: 4 AAPDSRVSEEENLKKTPKKKMKMVTGA-VASVLEDEA-TDTSDSEGSCGSEKDHFYSDDD 61
++P E L K ++K K+ + V L+ E T E E++ + D
Sbjct: 493 SSPSVSPPTPEPLHKVYEEKTKLPSSVEVKKKLKKELKTKMKKKEKQRDREREKDKNKDK 552
Query: 62 AIEADSEGDAEPCDKENENDGESSVGTNMGWADAMA-------KVLNKKTPESKPTILVK 114
+ E D KE E D E+ T W + + K K+ + P + +K
Sbjct: 553 SKEKDKV-------KEKEKDKETGRETKYPWKEFLKEEEADPYKFKIKEFEDVDPKVKLK 605
Query: 115 N------------KKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNL 162
+ KK ++EK K +++ EK K +DK E +M P V+ KE L
Sbjct: 606 DGLVRKEKEKHKDKKKDREKGKKDKDKREKEKVKDKGREDKMKAPAPPLVLPPKELALPL 665
Query: 163 QRIATRGVV-----QLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDFISVLRGM 217
AT V L + + EKVKE K+ K +K+ R
Sbjct: 666 FSPATASRVPAMLPSLLPVLPEKLFEEKEKVKEKEKKKDKKEKKKKKEKEKEKKEKEREK 725
Query: 218 DGSTNETASSRKKPKAKQTEVKSE 241
+ E ++K K K ++K E
Sbjct: 726 EKRERE-KREKEKEKHKHEKIKVE 748
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 37.4 bits (85), Expect = 0.015
Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 7/108 (6%)
Query: 52 EKDHFYSDDDAIEADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTI 111
++ H DD E + E D ++++E+ + GT+ G D + E +
Sbjct: 473 DRSHLRKDDSEEEKEKEEDPGSHEEDDESSEQGEKGTHHGSRDQ-----EDEEDEEEGHG 527
Query: 112 LVKNKKLEKEKEKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETE 159
L N++ E+E++K ++E E ++R++R E+ + PD +++E E
Sbjct: 528 LSLNQEEEEEEDKEEEEEEEDEERREERA--EVGAPLSPDHSEEEEEE 573
>gi|55770898 Rho GTPase activating protein 25 isoform a [Homo
sapiens]
Length = 645
Score = 37.4 bits (85), Expect = 0.015
Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 5 APDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIE 64
+P S E ++T + ++ ++ + + T T D+ S S +
Sbjct: 471 SPSSEAKAGEGHRRTMSQDLRQLS-------DSQRTSTYDNVPSLPGSPGEEASALSSQA 523
Query: 65 ADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEK 124
DS+GD G+ + G D++ +++ ++L KE E
Sbjct: 524 CDSKGDTLASPNSETGPGKKNSGEEE--IDSLQRMV---------------QELRKEIET 566
Query: 125 LKQERLEKIKQRDKRLE--WEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQK 182
KQ E+IK +K W + R+ ++ ++K+ L+ I+ R + + V+K K
Sbjct: 567 QKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALE-ISLRNMERSREDVEKRNK 625
Query: 183 NVDEKVKEAGSSMRK 197
++E+VKE SM++
Sbjct: 626 ALEEEVKEFVKSMKE 640
>gi|7661882 Rho GTPase activating protein 25 isoform b [Homo
sapiens]
Length = 638
Score = 37.4 bits (85), Expect = 0.015
Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 27/195 (13%)
Query: 5 APDSRVSEEENLKKTPKKKMKMVTGAVASVLEDEATDTSDSEGSCGSEKDHFYSDDDAIE 64
+P S E ++T + ++ ++ + + T T D+ S S +
Sbjct: 464 SPSSEAKAGEGHRRTMSQDLRQLS-------DSQRTSTYDNVPSLPGSPGEEASALSSQA 516
Query: 65 ADSEGDAEPCDKENENDGESSVGTNMGWADAMAKVLNKKTPESKPTILVKNKKLEKEKEK 124
DS+GD G+ + G D++ +++ ++L KE E
Sbjct: 517 CDSKGDTLASPNSETGPGKKNSGEEE--IDSLQRMV---------------QELRKEIET 559
Query: 125 LKQERLEKIKQRDKRLE--WEMMCRVKPDVVQDKETERNLQRIATRGVVQLFNAVQKHQK 182
KQ E+IK +K W + R+ ++ ++K+ L+ I+ R + + V+K K
Sbjct: 560 QKQMYEEQIKNLEKENYDVWAKVVRLNEELEKEKKKSAALE-ISLRNMERSREDVEKRNK 618
Query: 183 NVDEKVKEAGSSMRK 197
++E+VKE SM++
Sbjct: 619 ALEEEVKEFVKSMKE 633
>gi|50658065 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 98 KVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDK-RLEWEMMCRVKPDVVQDK 156
K NK +++ + K +E+ KEK Q LE ++ R+K + +++ + +DK
Sbjct: 363 KAKNKDVKDTEKKLNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQKDK 422
Query: 157 ETERNLQRIATRG------VVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDF 210
E + I + NA++K ++ ++K+KE S+++ + + K+
Sbjct: 423 EKVEEFKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQK-EKESR 481
Query: 211 ISVLRGMDGSTNETASSRKKPKAKQTEV 238
L G S NE +R K Q+E+
Sbjct: 482 EKELMGFSKSVNE---ARSKMDVAQSEL 506
>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3p [Homo sapiens]
Length = 476
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 113 VKNKKLEKEK--EKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGV 170
+KN+KLEK++ E+ ++ER + ++ + E E R + + + KET++ ++IA + V
Sbjct: 221 IKNRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQ-KKIAEKEV 279
Query: 171 -VQLFNAVQKHQKNVDEKVKEAGSSM 195
++L +K ++ EK KE G +
Sbjct: 280 RIKLLKKPEKGEEPTTEKPKERGEEI 305
>gi|50658063 SMC4 structural maintenance of chromosomes 4-like 1
[Homo sapiens]
Length = 1288
Score = 37.4 bits (85), Expect = 0.015
Identities = 34/148 (22%), Positives = 67/148 (45%), Gaps = 11/148 (7%)
Query: 98 KVLNKKTPESKPTILVKNKKLEKEKEKLKQERLEKIKQRDK-RLEWEMMCRVKPDVVQDK 156
K NK +++ + K +E+ KEK Q LE ++ R+K + +++ + +DK
Sbjct: 363 KAKNKDVKDTEKKLNKITKFIEENKEKFTQLDLEDVQVREKLKHATSKAKKLEKQLQKDK 422
Query: 157 ETERNLQRIATRG------VVQLFNAVQKHQKNVDEKVKEAGSSMRKRAKLISTVSKKDF 210
E + I + NA++K ++ ++K+KE S+++ + + K+
Sbjct: 423 EKVEEFKSIPAKSNNIINETTTRNNALEKEKEKEEKKLKEVMDSLKQETQGLQK-EKESR 481
Query: 211 ISVLRGMDGSTNETASSRKKPKAKQTEV 238
L G S NE +R K Q+E+
Sbjct: 482 EKELMGFSKSVNE---ARSKMDVAQSEL 506
>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
isoform hUpf3pdelta [Homo sapiens]
Length = 443
Score = 37.4 bits (85), Expect = 0.015
Identities = 25/86 (29%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 113 VKNKKLEKEK--EKLKQERLEKIKQRDKRLEWEMMCRVKPDVVQDKETERNLQRIATRGV 170
+KN+KLEK++ E+ ++ER + ++ + E E R + + + KET++ ++IA + V
Sbjct: 188 IKNRKLEKQRIREEKREERRRRELEKKRLREEEKRRRREEERCKKKETDKQ-KKIAEKEV 246
Query: 171 -VQLFNAVQKHQKNVDEKVKEAGSSM 195
++L +K ++ EK KE G +
Sbjct: 247 RIKLLKKPEKGEEPTTEKPKERGEEI 272
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.304 0.122 0.333
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,753,820
Number of Sequences: 37866
Number of extensions: 488387
Number of successful extensions: 4276
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 472
Number of HSP's that attempted gapping in prelim test: 3047
Number of HSP's gapped (non-prelim): 1323
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.