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Search of human proteins with 126090909
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|126090909 engrailed homeobox 1 [Homo sapiens]
(392 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|126090909 engrailed homeobox 1 [Homo sapiens] 801 0.0
gi|7710121 engrailed homeobox 2 [Homo sapiens] 277 1e-74
gi|89257348 homeo box HB9 [Homo sapiens] 98 1e-20
gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens] 90 3e-18
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 89 9e-18
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 84 3e-16
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 82 1e-15
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 82 1e-15
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 82 1e-15
gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens] 81 2e-15
gi|94536800 empty spiracles homolog 1 [Homo sapiens] 79 7e-15
gi|226437602 NK1 homeobox 2 [Homo sapiens] 78 1e-14
gi|148613882 homeobox A4 [Homo sapiens] 78 1e-14
gi|7110735 ventral anterior homeobox 2 [Homo sapiens] 78 2e-14
gi|24497517 homeobox A5 [Homo sapiens] 77 3e-14
gi|19923391 homeobox D3 [Homo sapiens] 76 6e-14
gi|24497538 homeobox C4 [Homo sapiens] 76 6e-14
gi|24497540 homeobox C4 [Homo sapiens] 76 6e-14
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 76 6e-14
gi|194363768 homeobox D9 [Homo sapiens] 75 8e-14
gi|118582284 msh homeobox 1 [Homo sapiens] 75 1e-13
gi|24497554 homeobox A13 [Homo sapiens] 74 2e-13
gi|84570137 homeobox B3 [Homo sapiens] 73 4e-13
gi|13375632 homeobox D1 [Homo sapiens] 72 1e-12
gi|24497513 homeobox A3 isoform a [Homo sapiens] 72 1e-12
gi|13562112 homeobox A3 isoform a [Homo sapiens] 72 1e-12
gi|11321638 homeobox C5 [Homo sapiens] 72 1e-12
gi|18959212 GS homeobox 2 [Homo sapiens] 72 1e-12
gi|5031759 homeobox A11 [Homo sapiens] 71 2e-12
gi|23397672 homeobox D4 [Homo sapiens] 71 2e-12
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 801 bits (2070), Expect = 0.0
Identities = 392/392 (100%), Positives = 392/392 (100%)
Query: 1 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP 60
MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP
Sbjct: 1 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP 60
Query: 61 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE 120
AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE
Sbjct: 61 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE 120
Query: 121 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP 180
QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP
Sbjct: 121 QPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPP 180
Query: 181 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT
Sbjct: 181 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
Query: 241 KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNE 300
KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNE
Sbjct: 241 KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNE 300
Query: 301 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK
Sbjct: 301 KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
Query: 361 ATGIKNGLALHLMAQGLYNHSTTTVQDKDESE 392
ATGIKNGLALHLMAQGLYNHSTTTVQDKDESE
Sbjct: 361 ATGIKNGLALHLMAQGLYNHSTTTVQDKDESE 392
>gi|7710121 engrailed homeobox 2 [Homo sapiens]
Length = 333
Score = 277 bits (708), Expect = 1e-74
Identities = 181/394 (45%), Positives = 203/394 (51%), Gaps = 63/394 (15%)
Query: 1 MEEQQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPP 60
MEE P+P G AAAA G SPG G GS SP A
Sbjct: 1 MEENDPKP--------GEAAAAVEGQRQPESSPGGGSGGGGGS-------SPGEADTGRR 45
Query: 61 AAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKE 120
A LP + P HP HR TNFFIDNILRP+FG +K+
Sbjct: 46 RALMLPAVLQAPGNHQHP---------------------HRITNFFIDNILRPEFGRRKD 84
Query: 121 QPPPQLLVAAAARGGAGG-GGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCG- 178
GGAGG GG + G A G + + G+R P + CAP A
Sbjct: 85 AGTCCAGAGGGRGGGAGGEGGASGAEGGGGAGGSEQLLGSGSREP-RQNPPCAPGAGGPL 143
Query: 179 PPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQ 238
P GS G G SK S GG GG G P
Sbjct: 144 PAAGSDSPGDGEGGSKT------------------------LSLHGGAKKGGDPGGPLDG 179
Query: 239 GTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKK 298
K G + + ++ QP++WPAWVYCTRYSDRPSSGPR+RK KKK
Sbjct: 180 SLKARGLGGGDLSVSSDSDSSQAGANLGAQPMLWPAWVYCTRYSDRPSSGPRSRKPKKKN 239
Query: 299 NEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKI 358
KEDKRPRTAFTAEQLQRLKAEFQ NRY+TEQRRQ+LAQELSLNESQIKIWFQNKRAKI
Sbjct: 240 PNKEDKRPRTAFTAEQLQRLKAEFQTNRYLTEQRRQSLAQELSLNESQIKIWFQNKRAKI 299
Query: 359 KKATGIKNGLALHLMAQGLYNHSTTTVQDKDESE 392
KKATG KN LA+HLMAQGLYNHSTT + K +SE
Sbjct: 300 KKATGNKNTLAVHLMAQGLYNHSTTAKEGKSDSE 333
>gi|89257348 homeo box HB9 [Homo sapiens]
Length = 401
Score = 98.2 bits (243), Expect = 1e-20
Identities = 97/309 (31%), Positives = 139/309 (44%), Gaps = 40/309 (12%)
Query: 99 LHRTTNFFIDNILR--PDFGCKKEQPPPQLL--VAAAARGGAGGGGRVERDRGQT----- 149
+ ++ NF ID +L P + P L+ +AAAA G GGGG G +
Sbjct: 1 MEKSKNFRIDALLAVDPPRAASAQSAPLALVTSLAAAASGTGGGGGGGGASGGTSGSCSP 60
Query: 150 AAGRDPVHP---LGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNP-----AAA 201
A+ P P L +P LL A A P G A G G + G+ A
Sbjct: 61 ASSEPPAAPADRLRAESPSPPRLLAAHCALL-PKPGFLGAGGGGGGTGGGHGGPHHHAHP 119
Query: 202 AAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKY--PEHGNPAILLMGSANGG 259
AAAAAA AAAAAAA GG+ GGAG P AQ Y P +G A + G
Sbjct: 120 GAAAAAAAAAAAAAAGGLALGLHPGGAQGGAGLP-AQAALYGHPVYGYSAAAAAAALAGQ 178
Query: 260 -PVVKTDSQQ-----------PLVWPAWVY-CTRYSDRPSSGPRTRKLKKKKNEKED--- 303
P + Q P+ A + ++ ++G K+ ++ +
Sbjct: 179 HPALSYSYPQVQGAHPAHPADPIKLGAGTFQLDQWLRASTAGMILPKMPDFNSQAQSNLL 238
Query: 304 ---KRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
+RPRTAFT++QL L+ +F+ N+Y++ +R +A L L E+Q+KIWFQN+R K K+
Sbjct: 239 GKCRRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 298
Query: 361 ATGIKNGLA 369
+ K A
Sbjct: 299 SKKAKEQAA 307
Score = 33.1 bits (74), Expect = 0.44
Identities = 26/77 (33%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 14 SALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPH 73
+A AAAAA GGL+L L PG G+ G + P AA HP
Sbjct: 124 AAAAAAAAAAAGGLALGLHPG--GAQGGAGLPAQAALYGHPVYGYSAAAAAAALAGQHPA 181
Query: 74 LPPHPPPPPPQHLAAPA 90
L P H A PA
Sbjct: 182 LSYSYPQVQGAHPAHPA 198
>gi|239742243 PREDICTED: HPX-153 homeobox [Homo sapiens]
Length = 411
Score = 90.1 bits (222), Expect = 3e-18
Identities = 87/311 (27%), Positives = 120/311 (38%), Gaps = 26/311 (8%)
Query: 66 PPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPD-FGCKKEQ--- 121
PPLA +P P A +PAA L R T+F + +IL P+ F ++ +
Sbjct: 16 PPLAASDTVPAAPEG---------AGAARPAAPL-RPTSFSVLDILDPNKFNSRRRRCVL 65
Query: 122 ---------PPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCA 172
P A A +G R E + AG V G P A A
Sbjct: 66 LGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAGAGGVGAAGAEPPNAGDPFKA 125
Query: 173 PDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGA 232
+A +G G S A AA + GGG G GA
Sbjct: 126 GEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAPETEAARGAEEARGGGGGLGA 185
Query: 233 GSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQP---LVWPAWVYCTRYSDRPSSGP 289
G QG + A + +A G +Q P P T ++ P
Sbjct: 186 RGSGCQGAAETDASPGATVDEAAAPGPRENSPVAQGPPGGAAAPGGAGTTPQGTATAAKP 245
Query: 290 RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKI 349
+ ++ + +R RTAFT EQL L+ +F+A RY++ R LA LSL E+Q+KI
Sbjct: 246 KRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKI 305
Query: 350 WFQNKRAKIKK 360
WFQN+R K KK
Sbjct: 306 WFQNRRTKWKK 316
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 88.6 bits (218), Expect = 9e-18
Identities = 90/332 (27%), Positives = 126/332 (37%), Gaps = 27/332 (8%)
Query: 46 DSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNF 105
D P +P+ A + PA A P P+ A +PAA L R T+F
Sbjct: 398 DRAPRAPKAAAKAAPAKRT----ARRRXXXXDTVPAAPEGAGAA----RPAAPL-RPTSF 448
Query: 106 FIDNILRPD-FGCKKEQ------------PPPQLLVAAAARGGAGGGGRVERDRGQTAAG 152
+ +IL P+ F ++ + P A A +G R E + AG
Sbjct: 449 SVLDILDPNKFNSRRRRCVLLGPVAPAACAPCASAPCAPAPAASGRPPRAEELERRALAG 508
Query: 153 RDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAA 212
V G P A A +A +G G S A
Sbjct: 509 AGGVGAAGAEPPNAGDPFKAGEAETNDTNGYSSGGGGHSPSADSGDEVPDDEDDDEDEAP 568
Query: 213 AAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGP----VVKTDSQQ 268
AA + GGG G GA G QG + +P + +A GP V
Sbjct: 569 ETEAARGAEEARGGGGGLGARGSGCQGAAETD-ASPGATVDEAAAPGPRENSPVAPGPPG 627
Query: 269 PLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYI 328
P T ++ P+ ++ + +R RTAFT EQL L+ +F+A RY+
Sbjct: 628 GAAAPGGAGTTPQGTATAAKPKRKRTGSDSKSGKPRRARTAFTYEQLVALENKFKATRYL 687
Query: 329 TEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
+ R LA LSL E+Q+KIWFQN+R K KK
Sbjct: 688 SVCERLNLALSLSLTETQVKIWFQNRRTKWKK 719
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 83.6 bits (205), Expect = 3e-16
Identities = 69/242 (28%), Positives = 110/242 (45%), Gaps = 32/242 (13%)
Query: 149 TAAGRDPVHPLGTRAPGAA--------SLLCAP--DANCGPPDG--------SQPAAAGA 190
+++ P PLGT PG S L +P + P G S P A+GA
Sbjct: 54 SSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGA 113
Query: 191 G---ASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGN 247
AS +G+ ++++++A+A+ A+AAAAAAA + +G AG P P
Sbjct: 114 ALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLS-PPPPP 172
Query: 248 PAILLMGSANG--------GPVVKTDSQQPLVWPAWVYCTRYSD-RPSSGPRTRKLKKKK 298
P + SA P+ + + P+ WP + + D R + P + K
Sbjct: 173 PGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDK 232
Query: 299 NEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKI 358
+ K K R F+ +Q+ L+ F+ +Y+ R LA L + ESQ+K+WFQN+R K
Sbjct: 233 DGKR-KHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKW 291
Query: 359 KK 360
+K
Sbjct: 292 RK 293
Score = 37.7 bits (86), Expect = 0.018
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 15 ALGAAA-AATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPH 73
A GAA +A+P G S S S AS SS S + + + + P A L L
Sbjct: 110 ASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASSP----AGLLAGLPRFSS 165
Query: 74 LPPHPPP------PPPQHLAAPAHQPQPAAQLHRTTNFFIDNILR 112
L P PPP P +AA P+P A+L T F +++
Sbjct: 166 LSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQ 210
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.6 bits (200), Expect = 1e-15
Identities = 82/274 (29%), Positives = 111/274 (40%), Gaps = 33/274 (12%)
Query: 96 AAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDP 155
AA H +F + +IL P + P + A + A E + G+ A+ RDP
Sbjct: 11 AAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLA------EVEAGKDASSRDP 64
Query: 156 VHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAA 215
V L T G A+ L A+ P S A AG AG + + A A
Sbjct: 65 VRQLETPGQGFAASLLTRQAH---PHHSSDARDAAGPG-AGQASPLEGSEAEEEEDAEDP 120
Query: 216 AAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAW 275
+ + G A SP A G P GGPV
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALAS-GEPC----EDGGGGPV-------------- 161
Query: 276 VYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
R PR R+ + + N + +R RTAFT EQL L+ +F+A RY++ R
Sbjct: 162 ----RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369
LA LSL E+Q+KIWFQN+R K KK +G A
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGADGAA 251
Score = 37.0 bits (84), Expect = 0.031
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 210 AAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
AA A +P GGGG GG GSPG GT
Sbjct: 250 AAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 280
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
K NP A AA A AA GGGGSGG G PG
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGG----GGGGSGGSPGPPG 279
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.6 bits (200), Expect = 1e-15
Identities = 82/274 (29%), Positives = 111/274 (40%), Gaps = 33/274 (12%)
Query: 96 AAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDP 155
AA H +F + +IL P + P + A + A E + G+ A+ RDP
Sbjct: 11 AAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLA------EVEAGKDASSRDP 64
Query: 156 VHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAA 215
V L T G A+ L A+ P S A AG AG + + A A
Sbjct: 65 VRQLETPGQGFAASLLTRQAH---PHHSSDARDAAGPG-AGQASPLEGSEAEEEEDAEDP 120
Query: 216 AAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAW 275
+ + G A SP A G P GGPV
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALAS-GEPC----EDGGGGPV-------------- 161
Query: 276 VYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
R PR R+ + + N + +R RTAFT EQL L+ +F+A RY++ R
Sbjct: 162 ----RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369
LA LSL E+Q+KIWFQN+R K KK +G A
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGADGAA 251
Score = 37.0 bits (84), Expect = 0.031
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 210 AAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
AA A +P GGGG GG GSPG GT
Sbjct: 250 AAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 280
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
K NP A AA A AA GGGGSGG G PG
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGG----GGGGSGGSPGPPG 279
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 81.6 bits (200), Expect = 1e-15
Identities = 82/274 (29%), Positives = 111/274 (40%), Gaps = 33/274 (12%)
Query: 96 AAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDP 155
AA H +F + +IL P + P + A + A E + G+ A+ RDP
Sbjct: 11 AAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLA------EVEAGKDASSRDP 64
Query: 156 VHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAA 215
V L T G A+ L A+ P S A AG AG + + A A
Sbjct: 65 VRQLETPGQGFAASLLTRQAH---PHHSSDARDAAGPG-AGQASPLEGSEAEEEEDAEDP 120
Query: 216 AAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAW 275
+ + G A SP A G P GGPV
Sbjct: 121 RRPRLRERAARLLPGLARSPDAPAGALAS-GEPC----EDGGGGPV-------------- 161
Query: 276 VYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
R PR R+ + + N + +R RTAFT EQL L+ +F+A RY++ R
Sbjct: 162 ----RSPPGSPGSPRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRYLSVCERLN 217
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369
LA LSL E+Q+KIWFQN+R K KK +G A
Sbjct: 218 LALSLSLTETQVKIWFQNRRTKWKKQNPGADGAA 251
Score = 37.0 bits (84), Expect = 0.031
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 210 AAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
AA A +P GGGG GG GSPG GT
Sbjct: 250 AAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 280
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
K NP A AA A AA GGGGSGG G PG
Sbjct: 241 KKQNPGADGAAQVGGGAPQPGAAGGG----GGGGSGGSPGPPG 279
>gi|5031757 T-cell leukemia homeobox 1 [Homo sapiens]
Length = 330
Score = 80.9 bits (198), Expect = 2e-15
Identities = 64/207 (30%), Positives = 88/207 (42%), Gaps = 27/207 (13%)
Query: 178 GPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAA----------AAAAKPSDTGGGG 227
G + A GAGA G P A A + A A P GGGG
Sbjct: 59 GGGSAAATGAGGAGAYGTGGPGGPGGPAGGGGACSMGPLTGSYNVNMALAGGPGPGGGGG 118
Query: 228 SGGGAGSPGAQGT-KYPEHGNPAILLMGS---ANGGPVVKTDSQQP-------LVWPAWV 276
S GGAG+ A G + P H A + A G P V + P L +P
Sbjct: 119 SSGGAGALSAAGVIRVPAHRPLAGAVAHPQPLATGLPTVPSVPAMPGVNNLTGLTFPWME 178
Query: 277 YCTRYS-DRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
RY+ DR + P + KK K+PRT+FT Q+ L+ F +Y+ R
Sbjct: 179 SNRRYTKDRFTGHPYQNRTPPKK-----KKPRTSFTRLQICELEKRFHRQKYLASAERAA 233
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKAT 362
LA+ L + ++Q+K WFQN+R K ++ T
Sbjct: 234 LAKALKMTDAQVKTWFQNRRTKWRRQT 260
>gi|94536800 empty spiracles homolog 1 [Homo sapiens]
Length = 290
Score = 79.0 bits (193), Expect = 7e-15
Identities = 79/290 (27%), Positives = 112/290 (38%), Gaps = 60/290 (20%)
Query: 83 PQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRV 142
P+ AAP P A+L RT + +P K+ L+ GG GGG
Sbjct: 8 PRKAAAPGRGALPRARLPRTAPAAA-TMFQP--AAKRGFTIESLVAKDGGTGGGTGGGGA 64
Query: 143 ERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAA 202
AA +P+ P P +P+AA
Sbjct: 65 GSHLLAAAASEEPLRPTALNYP--------------------------------HPSAAE 92
Query: 203 AAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSAN---GG 259
AA + AAAAA G G G +PE N L + A+
Sbjct: 93 AAFVSGFPAAAAA-------------GAGRSLYGGPELVFPEAMNHPALTVHPAHQLGAS 139
Query: 260 PVVKTDS------QQPLVWPAWVYCTRYSD---RPSSGPRTRKLKKKKNEKEDKRPRTAF 310
P+ S + PL + WV R+ + S P+ L ++ KR RTAF
Sbjct: 140 PLQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPKRIRTAF 199
Query: 311 TAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
+ QL RL+ F+ N Y+ R+ LA LSL+E+Q+K+WFQN+R K K+
Sbjct: 200 SPSQLLRLERAFEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKR 249
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 78.2 bits (191), Expect = 1e-14
Identities = 81/282 (28%), Positives = 109/282 (38%), Gaps = 71/282 (25%)
Query: 96 AAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAGGGGRVERDRGQTAAGRDP 155
AA H +F + +IL P + P + A + A E + G+ A+ RDP
Sbjct: 11 AAPSHHKISFSVLDILDPQKFTRAALPAVRPAPREARKSLA------EVEAGKDASSRDP 64
Query: 156 VHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAA-------AA 208
V L T P AA P A P A A P AA +
Sbjct: 65 VRQLET--PDAAG----PGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSP 118
Query: 209 VAAAAAAAAAKPSDTGGGGS-GGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQ 267
A A A A+ +P + GGGG GSPG+
Sbjct: 119 DAPAGALASGEPCEDGGGGPVRSPPGSPGS------------------------------ 148
Query: 268 QPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRY 327
PR R+ + + N + +R RTAFT EQL L+ +F+A RY
Sbjct: 149 ---------------------PRPRRRRLEPNCAKPRRARTAFTYEQLVALENKFRATRY 187
Query: 328 ITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369
++ R LA LSL E+Q+KIWFQN+R K KK +G A
Sbjct: 188 LSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNPGADGAA 229
Score = 37.0 bits (84), Expect = 0.031
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 210 AAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
AA A +P GGGG GG GSPG GT
Sbjct: 228 AAQVGGGAPQPGAAGGGGGGGSGGSPGPPGT 258
Score = 31.6 bits (70), Expect = 1.3
Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 194 KAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPG 236
K NP A AA A AA GGGGSGG G PG
Sbjct: 219 KKQNPGADGAAQVGGGAPQPGAAGGG----GGGGSGGSPGPPG 257
>gi|148613882 homeobox A4 [Homo sapiens]
Length = 320
Score = 78.2 bits (191), Expect = 1e-14
Identities = 84/289 (29%), Positives = 112/289 (38%), Gaps = 55/289 (19%)
Query: 78 PPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGAG 137
PP PP QHL P QPQ P G +E P AR A
Sbjct: 45 PPAPPTQHL--PLQQPQ-----------------LPHAGGGRE-PTASYYAPRTAREPAY 84
Query: 138 GGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGN 197
+ G D +P G R + P+ PP ++ A G AS
Sbjct: 85 PAAALYPAHGAA----DTAYPYGYRGGASPGRPPQPEQ---PPAQAKGPAHGLHASHVLQ 137
Query: 198 PAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSAN 257
P AV AA T G +GG A PA L+ A+
Sbjct: 138 PQLPPPLQPRAVPPAAPRRCEAAPATPGVPAGGSA---------------PACPLL-LAD 181
Query: 258 GGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQR 317
P+ ++P+V+P W+ S + N E KR RTA+T +Q+
Sbjct: 182 KSPL-GLKGKEPVVYP-WMKKIHVS----------AVNPSYNGGEPKRSRTAYTRQQVLE 229
Query: 318 LKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKATGIKN 366
L+ EF NRY+T +RR +A L L+E Q+KIWFQN+R K KK + N
Sbjct: 230 LEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPN 278
Score = 29.6 bits (65), Expect = 4.9
Identities = 32/101 (31%), Positives = 39/101 (38%), Gaps = 20/101 (19%)
Query: 8 PKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPP 67
P++ R+ A AAA G + + P G G + P P P P PPA P
Sbjct: 76 PRTAREPAYPAAALYPAHGAADTAYP-------YGYRGGASPGRP-PQPEQPPAQAKGPA 127
Query: 68 LAHH------PHLPPH------PPPPPPQHLAAPAHQPQPA 96
H P LPP PP P + AAPA PA
Sbjct: 128 HGLHASHVLQPQLPPPLQPRAVPPAAPRRCEAAPATPGVPA 168
>gi|7110735 ventral anterior homeobox 2 [Homo sapiens]
Length = 290
Score = 77.8 bits (190), Expect = 2e-14
Identities = 55/149 (36%), Positives = 81/149 (54%), Gaps = 8/149 (5%)
Query: 218 AKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQ-----QPLVW 272
A+ +++GGGG G S GA + G+ + G++ P +S QP
Sbjct: 13 ARRAESGGGGGRCGDRS-GAGDLRADGGGHSPTEVAGTSASSPAGSRESGADSDGQPGPG 71
Query: 273 PAWVYCTRYSDRPSSGP-RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQ 331
A +C R R + G R L K + KR RT+FTAEQL RL+ EFQ +Y+ +
Sbjct: 72 EA-DHCRRILVRDAKGTIREIVLPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGR 130
Query: 332 RRQTLAQELSLNESQIKIWFQNKRAKIKK 360
R LA++L+L+E+Q+K+WFQN+R K KK
Sbjct: 131 ERTELARQLNLSETQVKVWFQNRRTKQKK 159
>gi|24497517 homeobox A5 [Homo sapiens]
Length = 270
Score = 76.6 bits (187), Expect = 3e-14
Identities = 69/237 (29%), Positives = 97/237 (40%), Gaps = 33/237 (13%)
Query: 130 AAARGGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAG 189
+ R G+G G ER R A+ + AP + P P +A
Sbjct: 55 SVGRSGSGHFGSGERARSYAASA--------SAAPAEPRYSQPATSTHSPQPDPLPCSAV 106
Query: 190 AGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPA 249
A + + + + + + A+A A + S G G+ GA E PA
Sbjct: 107 APSPGSDSHHGGKNSLSNSSGASADAGSTHISSREGVGTASGA-----------EEDAPA 155
Query: 250 ILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTA 309
SA P +Q P ++P W+ S GP E KR RTA
Sbjct: 156 SSEQASAQSEPSPAPPAQ-PQIYP-WMRKLHISHDNIGGP------------EGKRARTA 201
Query: 310 FTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKATGIKN 366
+T Q L+ EF NRY+T +RR +A L L+E QIKIWFQN+R K KK +K+
Sbjct: 202 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKS 258
Score = 28.9 bits (63), Expect = 8.4
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 3/91 (3%)
Query: 18 AAAAATPGGLSLSLSPGASGSSGSGSDG--DSVPVSPQPAP-PSPPAAPCLPPLAHHPHL 74
+ A+A G +S G +SG+ D S S Q P P+PPA P + P H+
Sbjct: 126 SGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIYPWMRKLHI 185
Query: 75 PPHPPPPPPQHLAAPAHQPQPAAQLHRTTNF 105
P A A+ +L + +F
Sbjct: 186 SHDNIGGPEGKRARTAYTRYQTLELEKEFHF 216
>gi|19923391 homeobox D3 [Homo sapiens]
Length = 432
Score = 75.9 bits (185), Expect = 6e-14
Identities = 63/209 (30%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 180 PDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAA-------KPSDTGGGGSGGGA 232
P P A A + P +A + ++A A A A +P G GGG+
Sbjct: 46 PHQPYPPPAAASSLDTDYPGSACSIQSSAPLRAPAHKGAELNGSCMRPGTGNSQGGGGGS 105
Query: 233 GSPGAQGTKYPEH------------------GNPAILLMGSANGGPVVKTDSQQPLVWPA 274
PG + P G PA G N T S+Q ++P
Sbjct: 106 QPPGLNSEQQPPQPPPPPPTLPPSSPTNPGGGVPAKKPKGGPNASSSSATISKQ--IFP- 162
Query: 275 WVYCTRYSDRPSSGPRTRKLK---KKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQ 331
W+ +R + + + T K KR RTA+T+ QL L+ EF NRY+
Sbjct: 163 WMKESRQNSKQKNSCATAGESCEDKSPPGPASKRVRTAYTSAQLVELEKEFHFNRYLCRP 222
Query: 332 RRQTLAQELSLNESQIKIWFQNKRAKIKK 360
RR +A L+L E QIKIWFQN+R K KK
Sbjct: 223 RRVEMANLLNLTERQIKIWFQNRRMKYKK 251
Score = 32.7 bits (73), Expect = 0.58
Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 31 LSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAAPA 90
+ PG S G G ++ + PP PP P P LPP P P PA
Sbjct: 91 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP--------PTLPPSSPTNPGG--GVPA 140
Query: 91 HQPQ 94
+P+
Sbjct: 141 KKPK 144
>gi|24497538 homeobox C4 [Homo sapiens]
Length = 264
Score = 75.9 bits (185), Expect = 6e-14
Identities = 56/151 (37%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 225 GGGSGGGAGSPGAQGTKYPEHGN----PAILLMGSANGGPVVKTDSQQPLVWPAWVYCTR 280
G G+ G G P G +PE PA L SA+ P SQ P+ +
Sbjct: 74 GPGNSRGHG-PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPS----SA 128
Query: 281 YSDRPSSGPRTRKL-----KKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
S +P P +K+ N E KR RTA+T +Q+ L+ EF NRY+T +RR
Sbjct: 129 ASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIE 188
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKN 366
+A L L+E QIKIWFQN+R K KK + N
Sbjct: 189 IAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
>gi|24497540 homeobox C4 [Homo sapiens]
Length = 264
Score = 75.9 bits (185), Expect = 6e-14
Identities = 56/151 (37%), Positives = 74/151 (49%), Gaps = 14/151 (9%)
Query: 225 GGGSGGGAGSPGAQGTKYPEHGN----PAILLMGSANGGPVVKTDSQQPLVWPAWVYCTR 280
G G+ G G P G +PE PA L SA+ P SQ P+ +
Sbjct: 74 GPGNSRGHG-PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQPAPDHPS----SA 128
Query: 281 YSDRPSSGPRTRKL-----KKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
S +P P +K+ N E KR RTA+T +Q+ L+ EF NRY+T +RR
Sbjct: 129 ASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIE 188
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATGIKN 366
+A L L+E QIKIWFQN+R K KK + N
Sbjct: 189 IAHSLCLSERQIKIWFQNRRMKWKKDHRLPN 219
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 75.9 bits (185), Expect = 6e-14
Identities = 41/88 (46%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Query: 277 YCTRYSDRPSSGP-RTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQT 335
YC R R + G R L K + KR RT+FTAEQL RL+ EFQ +Y+ + R
Sbjct: 73 YCRRILVRDAKGSIREIILPKGLDLDRPKRTRTSFTAEQLYRLEMEFQRCQYVVGRERTE 132
Query: 336 LAQELSLNESQIKIWFQNKRAKIKKATG 363
LA++L+L+E+Q+K+WFQN+R K KK G
Sbjct: 133 LARQLNLSETQVKVWFQNRRTKQKKDQG 160
Score = 43.5 bits (101), Expect = 3e-04
Identities = 46/147 (31%), Positives = 56/147 (38%), Gaps = 14/147 (9%)
Query: 164 PGAASLL--CAPDANCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPS 221
PG +LL CA A G A GAGA AA +AAAAAA A A AA+
Sbjct: 191 PGLPALLPPCATGALGSALRGPSLPALGAGA------AAGSAAAAAAAAPGPAGAASPHP 244
Query: 222 DTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWV----- 276
GG G G PG P G+ L + G V S PL +
Sbjct: 245 PAVGGAPGPGPAGPGGLHAGAPAAGHSLFSLPVPSLLGSVASRLSSAPLTMAGSLAGNLQ 304
Query: 277 -YCTRYSDRPSSGPRTRKLKKKKNEKE 302
RY + P +R K+ EK+
Sbjct: 305 ELSARYLSSSAFEPYSRTNNKEGAEKK 331
Score = 32.3 bits (72), Expect = 0.76
Identities = 27/79 (34%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 23 TPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCL----PPLAHHPHLP--- 75
+P GL L P A+G+ GS G S+P A AA P A PH P
Sbjct: 189 SPPGLPALLPPCATGALGSALRGPSLPALGAGAAAGSAAAAAAAAPGPAGAASPHPPAVG 248
Query: 76 ----PHPPPPPPQHLAAPA 90
P P P H APA
Sbjct: 249 GAPGPGPAGPGGLHAGAPA 267
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 75.5 bits (184), Expect = 8e-14
Identities = 89/366 (24%), Positives = 135/366 (36%), Gaps = 87/366 (23%)
Query: 17 GAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPA---------PPSPPAAPCLPP 67
G A P G+ A G + + ++ S +P+ A P PPAA +
Sbjct: 42 GPGAQGRPAGV-------ADGPAATAAEFASCSFAPRSAVFSASWSAVPSQPPAAAAMSG 94
Query: 68 LAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLL 127
L H P+ PPPP LAA A +P + +P P
Sbjct: 95 LYH-----PYVPPPP---LAASASEPGRYVRSWM-------------------EPLPGFP 127
Query: 128 VAAAARGGAGGGGRVERDRGQTAAGRDP-------VHPLGTRAPGAASLLCAPDANCGPP 180
A GG GGGG RG + P + P AP A+ ++
Sbjct: 128 GGAGGGGGGGGGGP---GRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSL 184
Query: 181 DGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGT 240
S + A ++ + + + + AAAA GG+G GAG A GT
Sbjct: 185 SSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAAT--------GGTGPGAGIGAATGT 236
Query: 241 KYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKK-- 298
G S P+ + + ++ S P+ ++L
Sbjct: 237 ----------------GGSSEPSACSDHPIPGCS----LKEEEKQHSQPQQQQLDPNNPA 276
Query: 299 ----NEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNK 354
+ + ++ R +T Q L+ EF N Y+T RR +A+ L+L E Q+KIWFQN+
Sbjct: 277 ANWIHARSTRKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNR 336
Query: 355 RAKIKK 360
R K+KK
Sbjct: 337 RMKMKK 342
>gi|118582284 msh homeobox 1 [Homo sapiens]
Length = 303
Score = 75.1 bits (183), Expect = 1e-13
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 10/165 (6%)
Query: 198 PAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSAN 257
P A +A A + AA +A+P G G G+P A + P G+ ++ +
Sbjct: 73 PGAKESALAPSEGVQAAGGSAQPL----GVPPGSLGAPDAPSSPRPL-GHFSVGGLLKLP 127
Query: 258 GGPVVKTDSQQPLVWPAWVYCTRYSDRPSS--GPRTRKLKKKKNEKEDKRPRTAFTAEQL 315
+VK +S + W+ R+S P+ P L+K K +++PRT FT QL
Sbjct: 128 EDALVKAESPEKPERTPWMQSPRFSPPPARRLSPPACTLRKHKT---NRKPRTPFTTAQL 184
Query: 316 QRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
L+ +F+ +Y++ R + LSL E+Q+KIWFQN+RAK K+
Sbjct: 185 LALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 229
>gi|24497554 homeobox A13 [Homo sapiens]
Length = 388
Score = 74.3 bits (181), Expect = 2e-13
Identities = 93/380 (24%), Positives = 139/380 (36%), Gaps = 73/380 (19%)
Query: 17 GAAAAATPGGLSLSLSPGASG---SSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPH 73
GAAAAA + + G G + + + G+ + A + A C +
Sbjct: 37 GAAAAAAAAAAAAAAGAGGGGFPHPAAAAAGGNFSVAAAAAAAAAAAANQCR-------N 89
Query: 74 LPPHPPPPPPQHLAAPAHQPQPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAAR 133
L HP P P AA A+ P + PP AAAA
Sbjct: 90 LMAHPAPLAPG--AASAYSSAPG------------------------EAPPSAAAAAAAA 123
Query: 134 GGAGGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAG-- 191
A G G P P G A S A + P G+G
Sbjct: 124 AAAAAAAAAASSSG----GPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYY 179
Query: 192 --ASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSG--------------GGAGSP 235
A +P A + A A AAAAAA A K DT G + G A P
Sbjct: 180 PCARMGPHPNAIKSCAQPASAAAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGP 239
Query: 236 GAQGTKYPEHGN----PAILLMGSANGGPV-VKTDSQQPLV----WPAWVYCTRYSDRP- 285
P + + P + G + P+ + +S QP W +YC + +P
Sbjct: 240 YHHHQPMPGYLDMPVVPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQAQPP 299
Query: 286 ----SSGPRTRKLKKKKNE-KEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQEL 340
S+ P + + ++ R +T QL+ L+ E+ N++IT+ +R+ ++
Sbjct: 300 HLWKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATT 359
Query: 341 SLNESQIKIWFQNKRAKIKK 360
+L+E Q+ IWFQN+R K KK
Sbjct: 360 NLSERQVTIWFQNRRVKEKK 379
Score = 42.0 bits (97), Expect = 0.001
Identities = 42/130 (32%), Positives = 48/130 (36%), Gaps = 20/130 (15%)
Query: 138 GGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGASKAGN 197
GGG V + + G A AA+ A A G PAAA AG GN
Sbjct: 23 GGGLVADELNKNMEGA---------AAAAAAAAAAAAAGAGGGGFPHPAAAAAG----GN 69
Query: 198 PAAAAAAAAAAVAAA-------AAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAI 250
+ AAAAAAAA AAA A A P S G P A A
Sbjct: 70 FSVAAAAAAAAAAAANQCRNLMAHPAPLAPGAASAYSSAPGEAPPSAAAAAAAAAAAAAA 129
Query: 251 LLMGSANGGP 260
S++GGP
Sbjct: 130 AAAASSSGGP 139
Score = 31.2 bits (69), Expect = 1.7
Identities = 29/94 (30%), Positives = 38/94 (40%), Gaps = 6/94 (6%)
Query: 8 PKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLP- 66
P + +A AAAAA S S PG +G +G+ + P S S PAA LP
Sbjct: 114 PSAAAAAAAAAAAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAA--LPY 171
Query: 67 ---PLAHHPHLPPHPPPPPPQHLAAPAHQPQPAA 97
++P P P + A PA AA
Sbjct: 172 GYFGSGYYPCARMGPHPNAIKSCAQPASAAAAAA 205
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 73.2 bits (178), Expect = 4e-13
Identities = 65/217 (29%), Positives = 82/217 (37%), Gaps = 54/217 (24%)
Query: 158 PLGTRAPGAASLLCAPDA-NCGPPDGSQPAAAGAGAS----KAGNPAAAAAAAAAAVAAA 212
P G+ P AA ++ N G P S P G G + K P + + +
Sbjct: 86 PPGSPPPSAAPTSATSNSSNGGGPSKSGPPKCGPGTNSTLTKQIFPWMKESRQTSKLKNN 145
Query: 213 AAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVW 272
+ A GGGG GGG+G G G G GG
Sbjct: 146 SPGTAEGCGGGGGGGGGGGSGGSGGGG--------------GGGGGGD------------ 179
Query: 273 PAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQR 332
K KR RTA+T+ QL L+ EF NRY+ R
Sbjct: 180 ----------------------KSPPGSAASKRARTAYTSAQLVELEKEFHFNRYLCRPR 217
Query: 333 RQTLAQELSLNESQIKIWFQNKRAKIKKATGIKNGLA 369
R +A L+L+E QIKIWFQN+R K KK K GLA
Sbjct: 218 RVEMANLLNLSERQIKIWFQNRRMKYKKDQKAK-GLA 253
>gi|13375632 homeobox D1 [Homo sapiens]
Length = 328
Score = 71.6 bits (174), Expect = 1e-12
Identities = 81/284 (28%), Positives = 108/284 (38%), Gaps = 56/284 (19%)
Query: 128 VAAAARGGAGG-----GGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDG 182
V+ ++ GG GG + R + A P PLG A + C P A P
Sbjct: 8 VSCSSSGGVGGDVLSLAPKFCRSDARPVA-LQPAFPLGNG--DGAFVSCLPLAAARPSPS 64
Query: 183 SQPAAAGAGASKAGNPAAAAAAAAAAVAAAAA-AAAAKPSDTGGGGSGGGAGSPGAQG-- 239
A A P A A AA AAAA +D G GSG PG G
Sbjct: 65 PPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGSGPAYDFPGVLGRA 124
Query: 240 ---------------------------TKYPEHGNPA---ILLMGSANGGP-VVKTDSQQ 268
Y G P L SA+G P +T S
Sbjct: 125 ADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAFGEPGPFPACLKASADGHPGAFQTASPA 184
Query: 269 PLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRP------------RTAFTAEQLQ 316
P +P V + S P++ +K K+N + + RT F+ +QL
Sbjct: 185 PGTYPKSV--SPASGLPAAFSTFEWMKVKRNASKKGKLAEYGAASPSSAIRTNFSTKQLT 242
Query: 317 RLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
L+ EF N+Y+T RR +A L LN++Q+KIWFQN+R K KK
Sbjct: 243 ELEKEFHFNKYLTRARRIEIANCLHLNDTQVKIWFQNRRMKQKK 286
Score = 37.0 bits (84), Expect = 0.031
Identities = 51/193 (26%), Positives = 73/193 (37%), Gaps = 42/193 (21%)
Query: 29 LSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPPPPPPQHLAA 88
++L P +G G+ +P++ PSPPAAP P + PPP PQ+
Sbjct: 35 VALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPSV---------PPPAAPQYAQC 85
Query: 89 P---AHQP--QPAAQLHRTTNFFIDNILRPDFGCKKEQPPPQLLVAAAARGGA------- 136
A++P PAA F+ + DF P +L AA GG+
Sbjct: 86 TLEGAYEPGAAPAAAAGGADYGFLGSGPAYDF--------PGVLGRAADDGGSHVHYATS 137
Query: 137 ---GGGGRVERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANCGPPDGSQPAAAGAGA- 192
GGG +G+ G P A L + D G P Q A+ G
Sbjct: 138 AVFSGGGSF------LLSGQVDYAAFGEPGPFPACLKASAD---GHPGAFQTASPAPGTY 188
Query: 193 SKAGNPAAAAAAA 205
K+ +PA+ AA
Sbjct: 189 PKSVSPASGLPAA 201
>gi|24497513 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 71.6 bits (174), Expect = 1e-12
Identities = 73/248 (29%), Positives = 100/248 (40%), Gaps = 36/248 (14%)
Query: 120 EQPPPQLLVAAAARGGAGGGGR--VERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANC 177
+QP P A+AA G G R +A G H L + L AP +
Sbjct: 30 QQPYP----ASAALGADGEYHRPACSLQSPSSAGGHPKAHEL---SEACLRTLSAPPSQ- 81
Query: 178 GPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGA 237
PP +P +A PA A A AA PS + SP
Sbjct: 82 -PPSLGEPPLHPP-PPQAAPPAPQPPQPAPQPPAPTPAAPPPPS----------SASPPQ 129
Query: 238 QGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRP-----SSGPRTR 292
+ P N A P++ + + ++P W+ +R + + SSG
Sbjct: 130 NASNNPTPANAA--------KSPLLNSPTVAKQIFP-WMKESRQNTKQKTSSSSSGESCA 180
Query: 293 KLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQ 352
K + KR RTA+T+ QL L+ EF NRY+ RR +A L+L E QIKIWFQ
Sbjct: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
Query: 353 NKRAKIKK 360
N+R K KK
Sbjct: 241 NRRMKYKK 248
Score = 43.1 bits (100), Expect = 4e-04
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 17 GAAAAATPGGLSLSLSPGASGSSG----SGSDGDSVPVSPQPAPP---SPPAAPCLPPLA 69
G + GG S S SP G+ G S +SVP PQ PP P LPP +
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 70 HHPHLPPHPPPPPPQ 84
+ LP PPPPPQ
Sbjct: 312 YPASLPSCAPPPPPQ 326
Score = 37.7 bits (86), Expect = 0.018
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 4 QQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAP 63
QQP P S +ALGA SL SP ++G + + APPS P +
Sbjct: 30 QQPYPAS---AALGADGEYHRPACSLQ-SPSSAGGHPKAHELSEACLRTLSAPPSQPPSL 85
Query: 64 CLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQ 98
PPL PPPPQ PQPA Q
Sbjct: 86 GEPPLH----------PPPPQAAPPAPQPPQPAPQ 110
Score = 33.9 bits (76), Expect = 0.26
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 6 PEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGS------DGDSVPVSPQPAPPSP 59
P P +R +A GA A TP P A G G+GS G V V P
Sbjct: 322 PPPPQKRYTAAGAGAGGTP-----DYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMS 376
Query: 60 PAAPCLPPLAHHPH 73
+ P L L H PH
Sbjct: 377 NSGPALFGLTHLPH 390
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 49 PVSPQPAPPSP-PAAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQL 99
P P P PP+P PAAP P A P + P P + + P A Q+
Sbjct: 104 PPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI 155
>gi|13562112 homeobox A3 isoform a [Homo sapiens]
Length = 443
Score = 71.6 bits (174), Expect = 1e-12
Identities = 73/248 (29%), Positives = 100/248 (40%), Gaps = 36/248 (14%)
Query: 120 EQPPPQLLVAAAARGGAGGGGR--VERDRGQTAAGRDPVHPLGTRAPGAASLLCAPDANC 177
+QP P A+AA G G R +A G H L + L AP +
Sbjct: 30 QQPYP----ASAALGADGEYHRPACSLQSPSSAGGHPKAHEL---SEACLRTLSAPPSQ- 81
Query: 178 GPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGA 237
PP +P +A PA A A AA PS + SP
Sbjct: 82 -PPSLGEPPLHPP-PPQAAPPAPQPPQPAPQPPAPTPAAPPPPS----------SASPPQ 129
Query: 238 QGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRP-----SSGPRTR 292
+ P N A P++ + + ++P W+ +R + + SSG
Sbjct: 130 NASNNPTPANAA--------KSPLLNSPTVAKQIFP-WMKESRQNTKQKTSSSSSGESCA 180
Query: 293 KLKKKKNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQ 352
K + KR RTA+T+ QL L+ EF NRY+ RR +A L+L E QIKIWFQ
Sbjct: 181 GDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQ 240
Query: 353 NKRAKIKK 360
N+R K KK
Sbjct: 241 NRRMKYKK 248
Score = 43.1 bits (100), Expect = 4e-04
Identities = 29/75 (38%), Positives = 34/75 (45%), Gaps = 7/75 (9%)
Query: 17 GAAAAATPGGLSLSLSPGASGSSG----SGSDGDSVPVSPQPAPP---SPPAAPCLPPLA 69
G + GG S S SP G+ G S +SVP PQ PP P LPP +
Sbjct: 252 GKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGTYGLPPAS 311
Query: 70 HHPHLPPHPPPPPPQ 84
+ LP PPPPPQ
Sbjct: 312 YPASLPSCAPPPPPQ 326
Score = 37.7 bits (86), Expect = 0.018
Identities = 32/95 (33%), Positives = 38/95 (40%), Gaps = 14/95 (14%)
Query: 4 QQPEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAP 63
QQP P S +ALGA SL SP ++G + + APPS P +
Sbjct: 30 QQPYPAS---AALGADGEYHRPACSLQ-SPSSAGGHPKAHELSEACLRTLSAPPSQPPSL 85
Query: 64 CLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQ 98
PPL PPPPQ PQPA Q
Sbjct: 86 GEPPLH----------PPPPQAAPPAPQPPQPAPQ 110
Score = 33.9 bits (76), Expect = 0.26
Identities = 25/74 (33%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 6 PEPKSQRDSALGAAAAATPGGLSLSLSPGASGSSGSGS------DGDSVPVSPQPAPPSP 59
P P +R +A GA A TP P A G G+GS G V V P
Sbjct: 322 PPPPQKRYTAAGAGAGGTP-----DYDPHAHGLQGNGSYGTPHIQGSPVFVGGSYVEPMS 376
Query: 60 PAAPCLPPLAHHPH 73
+ P L L H PH
Sbjct: 377 NSGPALFGLTHLPH 390
Score = 29.6 bits (65), Expect = 4.9
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 49 PVSPQPAPPSP-PAAPCLPPLAHHPHLPPHPPPPPPQHLAAPAHQPQPAAQL 99
P P P PP+P PAAP P A P + P P + + P A Q+
Sbjct: 104 PPQPAPQPPAPTPAAPPPPSSASPPQNASNNPTPANAAKSPLLNSPTVAKQI 155
>gi|11321638 homeobox C5 [Homo sapiens]
Length = 222
Score = 71.6 bits (174), Expect = 1e-12
Identities = 60/189 (31%), Positives = 86/189 (45%), Gaps = 23/189 (12%)
Query: 185 PAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPE 244
P+ + G A NP A A + AAA G G +P G +
Sbjct: 54 PSNSLHGVDMAANPRAHPDRPACSAAAAP-----------GHAPGRDEAAPLNPGMYSQK 102
Query: 245 HGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKK---KNEK 301
PA+ ++G +K + Q PA + +P + P+ K +E
Sbjct: 103 AARPALEERAKSSGE--IKEEQAQT-GQPAGL------SQPPAPPQIYPWMTKLHMSHET 153
Query: 302 EDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKA 361
+ KR RT++T Q L+ EF NRY+T +RR +A L LNE QIKIWFQN+R K KK
Sbjct: 154 DGKRSRTSYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKD 213
Query: 362 TGIKNGLAL 370
+ +K+ AL
Sbjct: 214 SKMKSKEAL 222
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 71.6 bits (174), Expect = 1e-12
Identities = 74/234 (31%), Positives = 93/234 (39%), Gaps = 56/234 (23%)
Query: 131 AARGGAGGGGRVERDRGQTAAGRDPVHPL----GTRAPGAASLLCAPDANCGPPDGSQPA 186
A GGAG G V G AG PL + APG A P N P
Sbjct: 78 AGSGGAGAG--VTGAGGSGVAGAAGALPLLKSQFSSAPGDAQF--CPRVNHAHHH-HHPP 132
Query: 187 AAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGAQGTKYPEHG 246
+ P +AAAAAAAA AAAAAAA +P+H
Sbjct: 133 QHHHHHHQPQQPGSAAAAAAAAAAAAAAAALG-----------------------HPQHH 169
Query: 247 NPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKKKNEKEDKRP 306
P V T + + P +C +S KR
Sbjct: 170 AP-------------VCTATTYNVADPRRFHCLTMGGSDAS-----------QVPNGKRM 205
Query: 307 RTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKK 360
RTAFT+ QL L+ EF +N Y++ RR +A L+L+E Q+KIWFQN+R K KK
Sbjct: 206 RTAFTSTQLLELEREFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKK 259
>gi|5031759 homeobox A11 [Homo sapiens]
Length = 313
Score = 70.9 bits (172), Expect = 2e-12
Identities = 56/183 (30%), Positives = 77/183 (42%), Gaps = 33/183 (18%)
Query: 178 GPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSGGGAGSPGA 237
G P+ + S P AA A +AAA AAA A A SD+GGGG G A
Sbjct: 149 GTPENLASSDYPGDKSAEKGPPAATATSAAAAAAATGAPATSSSDSGGGG---GCRETAA 205
Query: 238 QGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAWVYCTRYSDRPSSGPRTRKLKKK 297
+ P ++ G T SSG RTRK
Sbjct: 206 AAEEKERRRRPESSSSPESSSGH------------------TEDKAGGSSGQRTRK---- 243
Query: 298 KNEKEDKRPRTAFTAEQLQRLKAEFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAK 357
R +T Q++ L+ EF + YI +++R L++ L+L + Q+KIWFQN+R K
Sbjct: 244 --------KRCPYTKYQIRELEREFFFSVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMK 295
Query: 358 IKK 360
KK
Sbjct: 296 EKK 298
>gi|23397672 homeobox D4 [Homo sapiens]
Length = 255
Score = 70.9 bits (172), Expect = 2e-12
Identities = 57/166 (34%), Positives = 71/166 (42%), Gaps = 36/166 (21%)
Query: 226 GGSGGGAGS----------PGAQGTKYPEHGNPAILLMGSANGGPVVKTDSQQPLVWPAW 275
GGSG G GS PG G Y G P P PL A
Sbjct: 63 GGSGPGPGSALPARGHGQEPGGPGGHYAAPGEPC----------PAPPAPPPAPLPG-AR 111
Query: 276 VYCTRYSDRPSSGPRTRK-------LKKKKNEK--------EDKRPRTAFTAEQLQRLKA 320
Y +P SG ++ +KK E KR RTA+T +Q+ L+
Sbjct: 112 AYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELEK 171
Query: 321 EFQANRYITEQRRQTLAQELSLNESQIKIWFQNKRAKIKKATGIKN 366
EF NRY+T +RR +A L L+E QIKIWFQN+R K KK + N
Sbjct: 172 EFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPN 217
Score = 32.3 bits (72), Expect = 0.76
Identities = 19/56 (33%), Positives = 23/56 (41%)
Query: 24 PGGLSLSLSPGASGSSGSGSDGDSVPVSPQPAPPSPPAAPCLPPLAHHPHLPPHPP 79
PG S + G G + P P PAPP+PP AP A+ P PP
Sbjct: 67 PGPGSALPARGHGQEPGGPGGHYAAPGEPCPAPPAPPPAPLPGARAYSQSDPKQPP 122
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.128 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,659,591
Number of Sequences: 37866
Number of extensions: 1518186
Number of successful extensions: 49970
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 1653
Number of HSP's that attempted gapping in prelim test: 15977
Number of HSP's gapped (non-prelim): 18202
length of query: 392
length of database: 18,247,518
effective HSP length: 104
effective length of query: 288
effective length of database: 14,309,454
effective search space: 4121122752
effective search space used: 4121122752
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.