Search of human proteins with 42476193

Search of human proteins with 42476193

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42476193 transmembrane protein 66 [Homo sapiens]
         (339 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42476193 transmembrane protein 66 [Homo sapiens]                   728   0.0  
gi|212549555 interleukin enhancer binding factor 3 isoform e [Ho...    38   0.011
gi|24234753 interleukin enhancer binding factor 3 isoform b [Hom...    38   0.011
gi|89035135 PREDICTED: similar to heterogeneous nuclear ribonucl...    37   0.025
gi|89034333 PREDICTED: similar to heterogeneous nuclear ribonucl...    37   0.025
gi|239747524 PREDICTED: similar to serum response factor-related...    37   0.033
gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo sap...    37   0.033
gi|57864582 hornerin [Homo sapiens]                                    36   0.056
gi|212549553 interleukin enhancer binding factor 3 isoform d [Ho...    36   0.056
gi|24234750 interleukin enhancer binding factor 3 isoform a [Hom...    36   0.056
gi|169203146 PREDICTED: similar to heterogeneous nuclear ribonuc...    35   0.073
gi|186928829 dermokine isoform 4 precursor [Homo sapiens]              35   0.096
gi|186928827 dermokine isoform 5 precursor [Homo sapiens]              35   0.096
gi|186928825 dermokine isoform 3 precursor [Homo sapiens]              35   0.096
gi|33504489 dermokine isoform 2 precursor [Homo sapiens]               35   0.096
gi|56699482 hypothetical protein LOC25940 [Homo sapiens]               35   0.096
gi|24234756 interleukin enhancer binding factor 3 isoform c [Hom...    35   0.13 
gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma...    33   0.28 
gi|26051237 nucleoporin 54kDa [Homo sapiens]                           33   0.36 
gi|33946327 nucleoporin 214kDa [Homo sapiens]                          33   0.48 
gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b...    33   0.48 
gi|31543543 retinoic acid induced 17 [Homo sapiens]                    33   0.48 
gi|239758038 PREDICTED: mucin 3A, cell surface associated, parti...    32   0.62 
gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]                  32   0.81 
gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]                  32   0.81 
gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]                  32   0.81 
gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]                  32   0.81 
gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]                 32   0.81 
gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a ...    32   1.1  
gi|239749213 PREDICTED: mucin 3B, cell surface associated, parti...    32   1.1  

>gi|42476193 transmembrane protein 66 [Homo sapiens]
          Length = 339

 Score =  728 bits (1879), Expect = 0.0
 Identities = 339/339 (100%), Positives = 339/339 (100%)

Query: 1   MAAACGPGAAGYCLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDP 60
           MAAACGPGAAGYCLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDP
Sbjct: 1   MAAACGPGAAGYCLLLGLHLFLLTAGPALGWNDPDRMLLRDVKALTLHYDRYTTSRRLDP 60

Query: 61  IPQLKCVGGTAGCDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESS 120
           IPQLKCVGGTAGCDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESS
Sbjct: 61  IPQLKCVGGTAGCDSYTPKVIQCQNKGWDGYDVQWECKTDLDIAYKFGKTVVSCEGYESS 120

Query: 121 EDQYVLRGSCGLEYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIV 180
           EDQYVLRGSCGLEYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIV
Sbjct: 121 EDQYVLRGSCGLEYNLDYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSGLITIV 180

Query: 181 VLLGIAFVVYKLFLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGH 240
           VLLGIAFVVYKLFLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGH
Sbjct: 181 VLLGIAFVVYKLFLSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGH 240

Query: 241 GATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYP 300
           GATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYP
Sbjct: 241 GATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYP 300

Query: 301 GTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGTRRR 339
           GTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGTRRR
Sbjct: 301 GTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGTRRR 339


>gi|212549555 interleukin enhancer binding factor 3 isoform e [Homo
           sapiens]
          Length = 706

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRA 282
           PPPP  +    G    G G   GFG A  G  GY N+G G+ +         Y +G N A
Sbjct: 638 PPPPNLRGRGRGGSIRGRGRGRGFGGANHG--GYMNAGAGYGS---------YGYGGNSA 686

Query: 283 ATPFSD 288
              +SD
Sbjct: 687 TAGYSD 692


>gi|24234753 interleukin enhancer binding factor 3 isoform b [Homo
           sapiens]
          Length = 702

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRA 282
           PPPP  +    G    G G   GFG A  G  GY N+G G+ +         Y +G N A
Sbjct: 634 PPPPNLRGRGRGGSIRGRGRGRGFGGANHG--GYMNAGAGYGS---------YGYGGNSA 682

Query: 283 ATPFSD 288
              +SD
Sbjct: 683 TAGYSD 688


>gi|89035135 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 215 QRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILG 274
           QR  + +G    G    F+G  N GHG        F+G  G+  S  G   G    G  G
Sbjct: 193 QRSRSGSGNFGGGRGGGFSGNDNFGHGGN------FSGCGGFGGSHGGSADGYNGFGNDG 246

Query: 275 YLFGSNRAATPFSDSWYYPS-YPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGY 333
             FG   +   F +     S + P   G +    S L+GG G Y        K +   GY
Sbjct: 247 KNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYF------AKPQNQGGY 300

Query: 334 GGT 336
           GG+
Sbjct: 301 GGS 303


>gi|89034333 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 13/123 (10%)

Query: 215 QRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILG 274
           QR  + +G    G    F+G  N GHG        F+G  G+  S  G   G    G  G
Sbjct: 193 QRSRSGSGNFGGGRGGGFSGNDNFGHGGN------FSGCGGFGGSHGGSADGYNGFGNDG 246

Query: 275 YLFGSNRAATPFSDSWYYPS-YPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGY 333
             FG   +   F +     S + P   G +    S L+GG G Y        K +   GY
Sbjct: 247 KNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYF------AKPQNQGGY 300

Query: 334 GGT 336
           GG+
Sbjct: 301 GGS 303


>gi|239747524 PREDICTED: similar to serum response factor-related
           protein C4 [Homo sapiens]
          Length = 434

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 12/120 (10%)

Query: 218 TNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLF 277
           +NS  P  P    +    +  G+   +GFG+      GY   GPG+  G    G +G  +
Sbjct: 29  SNSESPKEPKQLRKLFLGRGDGY---NGFGN----DGGYGGGGPGYSGGSRGYGSVGQGY 81

Query: 278 GSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGTR 337
           GS    + +  S  Y SY     G++        GGSGSY+   N + +   +S +G T+
Sbjct: 82  GSQ--GSGYGGSGSYNSYNNGGGGSFGGGSGSSFGGSGSYNDFGNYNNQ---SSNFGPTK 136


>gi|34740329 heterogeneous nuclear ribonucleoprotein A3 [Homo
           sapiens]
          Length = 378

 Score = 36.6 bits (83), Expect = 0.033
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 239 GHGATSGFGSAFTGQQGYENSGPGFWTG----LGTGGILGYLFGSNRAATPFSDSWYYPS 294
           G G   G G  ++ + GY   GPG+        G GG  GY  G N     +     Y  
Sbjct: 272 GDGGNYGGGPGYSSRGGYGGGGPGYGNQGGGYGGGGGYDGYNEGGNFGGGNYGGGGNYND 331

Query: 295 YPPSYPGTWNRAYSPLHGGS 314
           +  +Y G     Y P+ GGS
Sbjct: 332 F-GNYSGQQQSNYGPMKGGS 350


>gi|57864582 hornerin [Homo sapiens]
          Length = 2850

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 240  HGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPF-----SDSWYYPS 294
            HG++SG  S++ GQ G   SG     G G  G      GS ++ +P      S S    S
Sbjct: 973  HGSSSGSSSSY-GQHG---SGSRQSLGHGQHGS-----GSGQSPSPSRGRHGSGSGQSSS 1023

Query: 295  YPPSYPGT-WNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
            Y P   G+ W+ +  P   GSG  S   + ++++  +SGYG
Sbjct: 1024 YGPYRSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYG 1064



 Score = 35.8 bits (81), Expect = 0.056
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 240  HGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPF-----SDSWYYPS 294
            HG++SG  S++ GQ G   SG     G G  G      GS ++ +P      S S    S
Sbjct: 2383 HGSSSGSSSSY-GQHG---SGSRQSLGHGQHGS-----GSGQSPSPSRGRHGSGSGQSSS 2433

Query: 295  YPPSYPGT-WNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
            Y P   G+ W+ +  P   GSG  S   + ++++  +SGYG
Sbjct: 2434 YSPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYG 2474



 Score = 35.4 bits (80), Expect = 0.073
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 15/101 (14%)

Query: 240  HGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPF-----SDSWYYPS 294
            HG++SG  S++ GQ G   SG     G G  G      GS ++ +P      S S    S
Sbjct: 1913 HGSSSGSSSSY-GQHG---SGSRQSLGHGQHGS-----GSGQSPSPSRGRHGSGSGQSSS 1963

Query: 295  YPPSYPGT-WNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
            Y P   G+ W+ +  P   GSG  S   + ++++  +SGYG
Sbjct: 1964 YGPYGSGSGWSSSRGPYESGSGHSSGLGHRESRSGQSSGYG 2004



 Score = 33.5 bits (75), Expect = 0.28
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 15/101 (14%)

Query: 240  HGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPF-----SDSWYYPS 294
            HG++SG  S++ GQ G   SG     G G  G      GS ++ +P      S S    S
Sbjct: 1443 HGSSSGSSSSY-GQHG---SGSRQSLGHGQHGS-----GSGQSPSPSRGRHGSGSGQSSS 1493

Query: 295  YPPSYPGT-WNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
            Y P   G+ W+ +  P   GS   S   + ++++  +SGYG
Sbjct: 1494 YSPYGSGSGWSSSRGPYESGSSHSSGLGHRESRSGQSSGYG 1534



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 220 SAGPPPPGF-KSEFTGPQNTGHGATSGFG---SAFTGQQGYENSGPGFWTGLGTGGILGY 275
           S+G    GF +S  +GP  +G G +SGFG   S+     GY   G G     G G     
Sbjct: 438 SSGQHGTGFGRSSSSGPYVSGSGYSSGFGHHESSSEHSSGYTQHGSGSGHSSGHGQHGSR 497

Query: 276 LFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHG-GSGSYSVCSNS--DTKTRTASG 332
              S+R     S +    SY     G+        HG GSG     S    ++ +R +S 
Sbjct: 498 SGQSSRGERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQSSS 557

Query: 333 YG 334
           YG
Sbjct: 558 YG 559



 Score = 28.5 bits (62), Expect = 9.0
 Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 14/112 (12%)

Query: 229  KSEFTGPQNTGHGATSGFG-----SAFTGQQGYENSGPGFWTGLGT-GGILGYLFGSNRA 282
            +S  +G   +G G +SGFG     S  +       SG G  +G G  G   G      R 
Sbjct: 1150 RSSSSGQHGSGLGESSGFGHHESSSGQSSSYSQHGSGSGHSSGYGQHGSRSGQSSRGERH 1209

Query: 283  ATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
             +    S +Y  +     G+ +R  S  HG  GS S   +S ++ R  SG G
Sbjct: 1210 GSSSGSSSHYGQH-----GSGSRQSSG-HGRQGSGS--GHSPSRGRHGSGLG 1253


>gi|212549553 interleukin enhancer binding factor 3 isoform d [Homo
           sapiens]
          Length = 898

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRA 282
           PPPP  +    G    G G   GFG A  G  GY N+G G+ +         Y +G N A
Sbjct: 638 PPPPNLRGRGRGGSIRGRGRGRGFGGANHG--GYMNAGAGYGS---------YGYGGNSA 686

Query: 283 ATPFS 287
              +S
Sbjct: 687 TAGYS 691


>gi|24234750 interleukin enhancer binding factor 3 isoform a [Homo
           sapiens]
          Length = 894

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGSNRA 282
           PPPP  +    G    G G   GFG A  G  GY N+G G+ +         Y +G N A
Sbjct: 634 PPPPNLRGRGRGGSIRGRGRGRGFGGANHG--GYMNAGAGYGS---------YGYGGNSA 682

Query: 283 ATPFS 287
              +S
Sbjct: 683 TAGYS 687


>gi|169203146 PREDICTED: similar to heterogeneous nuclear
           ribonucleoprotein A1-like [Homo sapiens]
          Length = 321

 Score = 35.4 bits (80), Expect = 0.073
 Identities = 35/123 (28%), Positives = 46/123 (37%), Gaps = 13/123 (10%)

Query: 215 QRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILG 274
           QR  + +G    G    F+G  N GHG        F+G  G   S  G   G    G  G
Sbjct: 193 QRSRSGSGNFGGGRGGGFSGNDNFGHGGN------FSGCGGLGGSHGGSADGYNGFGNDG 246

Query: 275 YLFGSNRAATPFSDSWYYPS-YPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGY 333
             FG   +   F +     S + P   G +    S L+GG G Y        K +   GY
Sbjct: 247 KNFGGGSSYNDFGNCNNQSSNFGPMKGGNFGGKRSCLYGGGGQYF------AKPQNQGGY 300

Query: 334 GGT 336
           GG+
Sbjct: 301 GGS 303


>gi|186928829 dermokine isoform 4 precursor [Homo sapiens]
          Length = 386

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGP---GFWTGLGTGGILGYLFGS 279
           PPP G      G  N+G G+ S  GS+ +G  G  N+G    G  +G  +GG  G   GS
Sbjct: 232 PPPSGSGG---GSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSG---GS 285

Query: 280 NRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSG 315
           +  ++  S      S   S  G+   + S  HGGSG
Sbjct: 286 SGGSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSG 321



 Score = 29.3 bits (64), Expect = 5.3
 Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 235 PQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGY------LFGSNRAATPFSD 288
           P + G   TSG    F  Q G    G G   GLGT  + GY       FG N    P+  
Sbjct: 136 PGHNGAWETSGGHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQ 195

Query: 289 SWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTR-TASGYGG 335
                  PP++ GT N   +    G GS    + ++  T    SG GG
Sbjct: 196 GG--NGGPPNF-GT-NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGG 239


>gi|186928827 dermokine isoform 5 precursor [Homo sapiens]
          Length = 398

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGP---GFWTGLGTGGILGYLFGS 279
           PPP G      G  N+G G+ S  GS+ +G  G  N+G    G  +G  +GG  G   GS
Sbjct: 232 PPPSGSGG---GSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSG---GS 285

Query: 280 NRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSG 315
           +  ++  S      S   S  G+   + S  HGGSG
Sbjct: 286 SGGSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSG 321



 Score = 29.3 bits (64), Expect = 5.3
 Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 235 PQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGY------LFGSNRAATPFSD 288
           P + G   TSG    F  Q G    G G   GLGT  + GY       FG N    P+  
Sbjct: 136 PGHNGAWETSGGHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQ 195

Query: 289 SWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTR-TASGYGG 335
                  PP++ GT N   +    G GS    + ++  T    SG GG
Sbjct: 196 GG--NGGPPNF-GT-NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGG 239


>gi|186928825 dermokine isoform 3 precursor [Homo sapiens]
          Length = 416

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGP---GFWTGLGTGGILGYLFGS 279
           PPP G      G  N+G G+ S  GS+ +G  G  N+G    G  +G  +GG  G   GS
Sbjct: 232 PPPSGSGG---GSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSG---GS 285

Query: 280 NRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSG 315
           +  ++  S      S   S  G+   + S  HGGSG
Sbjct: 286 SGGSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSG 321



 Score = 29.3 bits (64), Expect = 5.3
 Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 235 PQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGY------LFGSNRAATPFSD 288
           P + G   TSG    F  Q G    G G   GLGT  + GY       FG N    P+  
Sbjct: 136 PGHNGAWETSGGHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQ 195

Query: 289 SWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTR-TASGYGG 335
                  PP++ GT N   +    G GS    + ++  T    SG GG
Sbjct: 196 GG--NGGPPNF-GT-NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGG 239


>gi|33504489 dermokine isoform 2 precursor [Homo sapiens]
          Length = 476

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 32/96 (33%), Positives = 44/96 (45%), Gaps = 9/96 (9%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGP---GFWTGLGTGGILGYLFGS 279
           PPP G      G  N+G G+ S  GS+ +G  G  N+G    G  +G  +GG  G   GS
Sbjct: 232 PPPSGSGG---GSSNSGGGSGSQSGSSGSGSNGDNNNGSSSGGSSSGSSSGGSSG---GS 285

Query: 280 NRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSG 315
           +  ++  S      S   S  G+   + S  HGGSG
Sbjct: 286 SGGSSGNSGGSRGDSGSESSWGSSTGSSSGNHGGSG 321



 Score = 29.3 bits (64), Expect = 5.3
 Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 11/108 (10%)

Query: 235 PQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGY------LFGSNRAATPFSD 288
           P + G   TSG    F  Q G    G G   GLGT  + GY       FG N    P+  
Sbjct: 136 PGHNGAWETSGGHGIFGSQGGLGGQGQGNPGGLGTPWVHGYPGNSAGSFGMNPQGAPWGQ 195

Query: 289 SWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTR-TASGYGG 335
                  PP++ GT N   +    G GS    + ++  T    SG GG
Sbjct: 196 GG--NGGPPNF-GT-NTQGAVAQPGYGSVRASNQNEGCTNPPPSGSGG 239


>gi|56699482 hypothetical protein LOC25940 [Homo sapiens]
          Length = 518

 Score = 35.0 bits (79), Expect = 0.096
 Identities = 42/142 (29%), Positives = 53/142 (37%), Gaps = 24/142 (16%)

Query: 202 PPYSEYPPFSHRY---QRFTNSAGPPPPGFKSEFTG-----PQNTGHGATSGFGSAFTGQ 253
           PP  E PP+  R    Q+ T   G    G++    G      Q  G G   G+     G 
Sbjct: 314 PPPPEMPPWQKRQDGPQQQTGGRGGGRGGYEHSSYGGRGGHEQGGGRGGRGGYDHGGRGG 373

Query: 254 QGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGG 313
            G  N   G WT  G+GG  GY  G  R      DS + P     + G  +  Y    GG
Sbjct: 374 -GRGNKHQGGWTDGGSGGGGGYQDGGYR------DSGFQPG--GYHGGHSSGGYQ--GGG 422

Query: 314 SGSYSVCSNSDTKTRTASGYGG 335
            G +   S     + T SGY G
Sbjct: 423 YGGFQTSS-----SYTGSGYQG 439


>gi|24234756 interleukin enhancer binding factor 3 isoform c [Homo
           sapiens]
          Length = 690

 Score = 34.7 bits (78), Expect = 0.13
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 223 PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGG 271
           PPPP  +    G    G G   GFG A  G  GY N+G G+ +  G GG
Sbjct: 634 PPPPNLRGRGRGGSIRGRGRGRGFGGANHG--GYMNAGAGYGS-YGYGG 679


>gi|4826734 fusion (involved in t(12;16) in malignant liposarcoma)
           [Homo sapiens]
          Length = 526

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 45/159 (28%), Positives = 65/159 (40%), Gaps = 24/159 (15%)

Query: 197 GQYSPPPYSEYPPFSHRYQRFTNSAGPPP-PGFKSEFTGPQNTGHGATSGFGSAFTGQQG 255
           GQ S   YS+    S   Q   +S G     G+ ++ T PQ  G+G+T G+GS+ + Q  
Sbjct: 34  GQQSYSGYSQSTDTSGYGQSSYSSYGQSQNTGYGTQST-PQ--GYGSTGGYGSSQSSQSS 90

Query: 256 Y--ENSGPGFW---TGLGTGGILGYLFGSNRAATPFSDSW-YYPSY-------------- 295
           Y  ++S PG+        T G  G    S+    P S S+   PSY              
Sbjct: 91  YGQQSSYPGYGQQPAPSSTSGSYGSSSQSSSYGQPQSGSYSQQPSYGGQQQSYGQQQSYN 150

Query: 296 PPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYG 334
           PP   G  N+  S   GG G     +    ++  +SG G
Sbjct: 151 PPQGYGQQNQYNSSSGGGGGGGGGGNYGQDQSSMSSGGG 189



 Score = 30.0 bits (66), Expect = 3.1
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 7/88 (7%)

Query: 195 SDGQYSPPPYSEYPPFSHRYQRFTNSAG-PPPPGFKSEFTGPQNTGHGATSGFGSAFTGQ 253
           S GQ     YS+ P +  + Q +       PP G+  +     ++G G   G G  +   
Sbjct: 121 SYGQPQSGSYSQQPSYGGQQQSYGQQQSYNPPQGYGQQNQYNSSSGGGGGGGGGGNYGQD 180

Query: 254 QGYENSGPGFWTGLGT------GGILGY 275
           Q   +SG G   G G       GG  GY
Sbjct: 181 QSSMSSGGGSGGGYGNQDQSGGGGSGGY 208


>gi|26051237 nucleoporin 54kDa [Homo sapiens]
          Length = 507

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 221 AGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGG 271
           + P   G    F G QN G G  +GFG+      G    G G  TGLG GG
Sbjct: 42  SAPTNTGTTGLFGGTQNKGFGFGTGFGTTTGTSTGL---GTGLGTGLGFGG 89


>gi|33946327 nucleoporin 214kDa [Homo sapiens]
          Length = 2090

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 36/138 (26%), Positives = 48/138 (34%), Gaps = 26/138 (18%)

Query: 200  SPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENS 259
            SPP +   P F           G P  G    FT P  +  G   G G+A     G+   
Sbjct: 1978 SPPTFGGSPGFG----------GVPAFGSAPAFTSPLGSTGGKVFGEGTAAASAGGFGFG 2027

Query: 260  GPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSV 319
                 T  GT         S  A T  S S     +     GT +  +S    G+G +S 
Sbjct: 2028 SSSNTTSFGT-------LASQNAPTFGSLSQQTSGF-----GTQSSGFSGFGSGTGGFSF 2075

Query: 320  CSNSDTKTRTASGYGGTR 337
             SN+     +  G+GG R
Sbjct: 2076 GSNNS----SVQGFGGWR 2089



 Score = 28.9 bits (63), Expect = 6.9
 Identities = 33/131 (25%), Positives = 50/131 (38%), Gaps = 13/131 (9%)

Query: 197  GQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFT-------GPQNTG--HGATSGFG 247
            GQ + P + + P F      F  ++        S F+       G  NTG   G  +  G
Sbjct: 1799 GQSNAPAFGQSPGFGQGGSVFGGTSAATTTAATSGFSFCQASGFGSSNTGSVFGQAASTG 1858

Query: 248  SAFTGQQGYENSGPGFWTG-LGTGGILGYLFG-SNRAATPFSDSWYYPSYPPSYPGTWNR 305
                GQQ   +SG  F +G  G GG  G+  G   + +   ++   + S    +  T   
Sbjct: 1859 GIVFGQQSSSSSGSVFGSGNTGRGG--GFFSGLGGKPSQDAANKNPFSSASGGFGSTATS 1916

Query: 306  AYSPLHGGSGS 316
              S L G SG+
Sbjct: 1917 NTSNLFGNSGA 1927


>gi|14043070 heterogeneous nuclear ribonucleoprotein A1 isoform b
           [Homo sapiens]
          Length = 372

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 31/110 (28%), Positives = 41/110 (37%), Gaps = 13/110 (11%)

Query: 234 GPQNTGHGATSGFGSAFTGQQGYENSGPGFWT------GLGTGGILGYLFGSNRAATPFS 287
           GP  +G     G G    G QG    G G +       G G GG  G  FG   +   F 
Sbjct: 257 GPGYSGGSRGYGSGGQGYGNQGSGYGGSGSYDSYNNGGGGGFGGGSGSNFGGGGSYNDFG 316

Query: 288 D-SWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASGYGGT 336
           + +    ++ P   G +    S  +GG G Y        K R   GYGG+
Sbjct: 317 NYNNQSSNFGPMKGGNFGGRSSGPYGGGGQYF------AKPRNQGGYGGS 360



 Score = 32.3 bits (72), Expect = 0.62
 Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 8/92 (8%)

Query: 239 GHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGILGYLFGS---NRAATPFSDSWYYPSY 295
           G+G +    + F    GY   GPG+     +GG  GY  G        + +  S  Y SY
Sbjct: 236 GYGGSGDGYNGFGNDGGYGGGGPGY-----SGGSRGYGSGGQGYGNQGSGYGGSGSYDSY 290

Query: 296 PPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKT 327
                G +        GG GSY+   N + ++
Sbjct: 291 NNGGGGGFGGGSGSNFGGGGSYNDFGNYNNQS 322


>gi|31543543 retinoic acid induced 17 [Homo sapiens]
          Length = 1067

 Score = 32.7 bits (73), Expect = 0.48
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 194 LSDGQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQ 253
           ++ G  +  P    P F+ + Q+F+  AGP  P  +    G  N  +  + GFG+++ G 
Sbjct: 200 MASGMTTSNPGLNSPQFAGQQQQFSAKAGPAQPYIQQSMYGRPN--YPGSGGFGASYPG- 256

Query: 254 QGYENSGPGFWTGLG 268
                 GP    G+G
Sbjct: 257 ------GPNAPAGMG 265


>gi|239758038 PREDICTED: mucin 3A, cell surface associated, partial
           [Homo sapiens]
          Length = 909

 Score = 32.3 bits (72), Expect = 0.62
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 5/129 (3%)

Query: 203 PYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPG 262
           P S  P FS      T +     PGF S  T  + T H +T  F S+ T  +   +  P 
Sbjct: 177 PSSSTPSFSSSITT-TETTSHSTPGFTSSITTTETTSH-STPSFTSSITTTETTSHDTPS 234

Query: 263 FWTGLGTGGILGYLFGSNRA--ATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVC 320
           F + + T     +   S+ +   T  + S   PS+  S   T   ++S  H  + S +  
Sbjct: 235 FTSSITTSETPSHSTPSSTSLITTTKTTSHSTPSFTSSITTTETTSHS-AHSFTSSITTT 293

Query: 321 SNSDTKTRT 329
             +   TR+
Sbjct: 294 ETTSHNTRS 302


>gi|56549645 nucleoporin 98kD isoform 4 [Homo sapiens]
          Length = 1726

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 217 FTNSAGPP----PPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGI 272
           F  S G P      GF +  T  QNTG G TSG G+  T   G  N+  G +    T   
Sbjct: 2   FNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSG-GAFGTSAFGSSNNTGGLFGNSQTKP- 59

Query: 273 LGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASG 332
            G LFG++  + P + +     +  S  GT N  +     G+  +S  +N+  + +  +G
Sbjct: 60  -GGLFGTSSFSQPATSTSTGFGFGTS-TGTANTLFGTASTGTSLFSSQNNAFAQNK-PTG 116

Query: 333 YG 334
           +G
Sbjct: 117 FG 118


>gi|56549643 nucleoporin 98kD isoform 3 [Homo sapiens]
          Length = 937

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 217 FTNSAGPP----PPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGI 272
           F  S G P      GF +  T  QNTG G TSG G+  T   G  N+  G +    T   
Sbjct: 2   FNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSG-GAFGTSAFGSSNNTGGLFGNSQTKP- 59

Query: 273 LGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASG 332
            G LFG++  + P + +     +  S  GT N  +     G+  +S  +N+  + +  +G
Sbjct: 60  -GGLFGTSSFSQPATSTSTGFGFGTS-TGTANTLFGTASTGTSLFSSQNNAFAQNK-PTG 116

Query: 333 YG 334
           +G
Sbjct: 117 FG 118


>gi|21264365 nucleoporin 98kD isoform 1 [Homo sapiens]
          Length = 1800

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 217 FTNSAGPP----PPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGI 272
           F  S G P      GF +  T  QNTG G TSG G+  T   G  N+  G +    T   
Sbjct: 2   FNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSG-GAFGTSAFGSSNNTGGLFGNSQTKP- 59

Query: 273 LGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASG 332
            G LFG++  + P + +     +  S  GT N  +     G+  +S  +N+  + +  +G
Sbjct: 60  -GGLFGTSSFSQPATSTSTGFGFGTS-TGTANTLFGTASTGTSLFSSQNNAFAQNK-PTG 116

Query: 333 YG 334
           +G
Sbjct: 117 FG 118


>gi|21264369 nucleoporin 98kD isoform 2 [Homo sapiens]
          Length = 920

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 217 FTNSAGPP----PPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGLGTGGI 272
           F  S G P      GF +  T  QNTG G TSG G+  T   G  N+  G +    T   
Sbjct: 2   FNKSFGTPFGGGTGGFGTTSTFGQNTGFGTTSG-GAFGTSAFGSSNNTGGLFGNSQTKP- 59

Query: 273 LGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCSNSDTKTRTASG 332
            G LFG++  + P + +     +  S  GT N  +     G+  +S  +N+  + +  +G
Sbjct: 60  -GGLFGTSSFSQPATSTSTGFGFGTS-TGTANTLFGTASTGTSLFSSQNNAFAQNK-PTG 116

Query: 333 YG 334
           +G
Sbjct: 117 FG 118


>gi|42544130 splicing factor 1 isoform 1 [Homo sapiens]
          Length = 639

 Score = 32.0 bits (71), Expect = 0.81
 Identities = 35/120 (29%), Positives = 46/120 (38%), Gaps = 14/120 (11%)

Query: 197 GQYSPPPYSEYPPFSHRYQRFTNSAGPPPPGFKSEFTGP----QNTGHGATS-GFGS--A 249
           GQ  PPP    PP+  + Q+      PPPP      + P    QNT    TS G GS   
Sbjct: 487 GQPPPPPSGPLPPWQQQQQQ---PPPPPPPSSSMASSTPLPWQQNTTTTTTSAGTGSIPP 543

Query: 250 FTGQQGYENSGPGFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSP 309
           +  QQ    + PG     G   ++    G      P +     P  PP  PG+    Y+P
Sbjct: 544 WQQQQAAAAASPGAPQMQGNPTMVPLPPGVQPPLPPGAP----PPPPPPPPGSAGMMYAP 599


>gi|4504445 heterogeneous nuclear ribonucleoprotein A1 isoform a
           [Homo sapiens]
          Length = 320

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 34/135 (25%), Positives = 44/135 (32%), Gaps = 32/135 (23%)

Query: 215 QRFTNSAGPPPPGFKSEFTGPQNTGHGAT-------------SGFGSAFTGQQGYENSGP 261
           QR  + +G    G    F G  N G G                G+G +  G  G+ N G 
Sbjct: 193 QRGRSGSGNFGGGRGGGFGGNDNFGRGGNFSGRGGFGGSRGGGGYGGSGDGYNGFGNDGS 252

Query: 262 GFWTGLGTGGILGYLFGSNRAATPFSDSWYYPSYPPSYPGTWNRAYSPLHGGSGSYSVCS 321
            F    G GG        N  ++ F          P   G +    S  +GG G Y    
Sbjct: 253 NF----GGGGSYNDFGNYNNQSSNFG---------PMKGGNFGGRSSGPYGGGGQYF--- 296

Query: 322 NSDTKTRTASGYGGT 336
               K R   GYGG+
Sbjct: 297 ---AKPRNQGGYGGS 308


>gi|239749213 PREDICTED: mucin 3B, cell surface associated, partial
           [Homo sapiens]
          Length = 1063

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 218 TNSAGPPPPGFKSEFTGPQNTGHGATSGFGSAFTGQQGYENSGPGFWTGL 267
           T S    PP F S  T  ++T H +T  F S+ T  +   +S P F T +
Sbjct: 70  TKSTSYSPPSFTSSITSTESTSH-STPPFTSSITTNETTSHSTPSFTTSI 118


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.138    0.449 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,812,973
Number of Sequences: 37866
Number of extensions: 905495
Number of successful extensions: 2685
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 2574
Number of HSP's gapped (non-prelim): 177
length of query: 339
length of database: 18,247,518
effective HSP length: 103
effective length of query: 236
effective length of database: 14,347,320
effective search space: 3385967520
effective search space used: 3385967520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.