Search of human proteins with 42476083

Search of human proteins with 42476083

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|42476083 interferon, alpha 8 [Homo sapiens]
         (189 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|42476083 interferon, alpha 8 [Homo sapiens]                        370   e-103
gi|4504597 interferon, alpha 5 [Homo sapiens]                         304   3e-83
gi|169791013 interferon, alpha 21 [Homo sapiens]                      301   3e-82
gi|170763491 interferon, alpha 14 [Homo sapiens]                      300   4e-82
gi|10835103 interferon, alpha 4 [Homo sapiens]                        300   4e-82
gi|4504589 interferon, alpha 10 [Homo sapiens]                        299   1e-81
gi|4504593 interferon, alpha 16 [Homo sapiens]                        296   7e-81
gi|10880985 interferon, alpha 17 [Homo sapiens]                       295   1e-80
gi|11067751 interferon, alpha 2 [Homo sapiens]                        294   3e-80
gi|11128015 interferon, alpha 6 [Homo sapiens]                        292   1e-79
gi|71143135 interferon, alpha 7 [Homo sapiens]                        288   2e-78
gi|194394174 interferon, alpha 13 precursor [Homo sapiens]            279   1e-75
gi|13128950 interferon, alpha 1 [Homo sapiens]                        277   3e-75
gi|4504605 interferon, omega 1 [Homo sapiens]                         213   6e-56
gi|28882045 interferon, epsilon [Homo sapiens]                        101   4e-22
gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]               88   4e-18
gi|112789564 interferon kappa precursor [Homo sapiens]                 79   3e-15
gi|4885583 Rho-associated, coiled-coil containing protein kinase...    32   0.25 
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo...    29   2.8  
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo...    29   2.8  
gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic poly...    28   6.1  
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H...    27   8.0  
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    27   8.0  
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    27   8.0  
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo...    27   8.0  

>gi|42476083 interferon, alpha 8 [Homo sapiens]
          Length = 189

 Score =  370 bits (950), Expect = e-103
 Identities = 189/189 (100%), Positives = 189/189 (100%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE
Sbjct: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE
Sbjct: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN
Sbjct: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180

Query: 181 LQKRLKSKE 189
           LQKRLKSKE
Sbjct: 181 LQKRLKSKE 189


>gi|4504597 interferon, alpha 5 [Homo sapiens]
          Length = 189

 Score =  304 bits (778), Expect = 3e-83
 Identities = 155/189 (82%), Positives = 167/189 (88%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL F LL+ALVVL+ KS  SLGCDLPQTHSL NRR L+++AQM RISPFSCLKDRHDF 
Sbjct: 1   MALPFVLLMALVVLNCKSICSLGCDLPQTHSLSNRRTLMIMAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKAQAISVLHEMIQQTFNLFSTKDSSA  DETLLD+FY EL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWDETLLDKFYTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +C+MQEVGV ++PLM  DSIL VRKYFQRITLYLTEKKYS CAWEVVRAEIMRSFSLS N
Sbjct: 121 ACMMQEVGVEDTPLMNVDSILTVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSAN 180

Query: 181 LQKRLKSKE 189
           LQ+RL+ KE
Sbjct: 181 LQERLRRKE 189


>gi|169791013 interferon, alpha 21 [Homo sapiens]
          Length = 189

 Score =  301 bits (770), Expect = 3e-82
 Identities = 154/189 (81%), Positives = 170/189 (89%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILLAQM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKAQAISVLHEMIQQTFNLFSTKDSSA  +++LL++F  EL+QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTKDSSATWEQSLLEKFSTELNQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVGV E+PLM  DSILAV+KYFQRITLYLTEKKYS CAWEVVRAEIMRSFSLS  
Sbjct: 121 ACVIQEVGVEETPLMNVDSILAVKKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSLSKI 180

Query: 181 LQKRLKSKE 189
            Q+RL+ KE
Sbjct: 181 FQERLRRKE 189


>gi|170763491 interferon, alpha 14 [Homo sapiens]
          Length = 189

 Score =  300 bits (769), Expect = 4e-82
 Identities = 153/189 (80%), Positives = 169/189 (89%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL F L++ALVVLS KS  SLGC+L QTHSL NRR L+L+AQMRRISPFSCLKDRHDFE
Sbjct: 1   MALPFALMMALVVLSCKSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFE 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKAQAISVLHEM+QQTFNLFSTK+SSAA DETLL++FYIEL QQ+NDLE
Sbjct: 61  FPQEEFDGNQFQKAQAISVLHEMMQQTFNLFSTKNSSAAWDETLLEKFYIELFQQMNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVGV E+PLM EDSILAV+KYFQRITLYL EKKYS CAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVKKYFQRITLYLMEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLKSKE 189
           LQKRL+ K+
Sbjct: 181 LQKRLRRKD 189


>gi|10835103 interferon, alpha 4 [Homo sapiens]
          Length = 189

 Score =  300 bits (769), Expect = 4e-82
 Identities = 154/189 (81%), Positives = 170/189 (89%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILLAQM RIS FSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FP+EEFD  QFQKAQAISVLHEMIQQTFNLFST+DSSAA +++LL++F  EL QQLNDLE
Sbjct: 61  FPEEEFDGHQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVGV E+PLM EDSILAVRKYFQRITLYLTEKKYS CAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLKSKE 189
           LQKRL+ K+
Sbjct: 181 LQKRLRRKD 189


>gi|4504589 interferon, alpha 10 [Homo sapiens]
          Length = 189

 Score =  299 bits (765), Expect = 1e-81
 Identities = 152/189 (80%), Positives = 168/189 (88%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILL QM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLGQMGRISPFSCLKDRHDFR 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
            PQEEFD  QFQKAQAISVLHEMIQQTFNLFST+DSSAA +++LL++F  EL QQLNDLE
Sbjct: 61  IPQEEFDGNQFQKAQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVGV E+PLM EDSILAVRKYFQRITLYL E+KYS CAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGVEETPLMNEDSILAVRKYFQRITLYLIERKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLKSKE 189
           LQKRL+ K+
Sbjct: 181 LQKRLRRKD 189


>gi|4504593 interferon, alpha 16 [Homo sapiens]
          Length = 189

 Score =  296 bits (758), Expect = 7e-81
 Identities = 155/189 (82%), Positives = 164/189 (86%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILLAQM RIS FSCLKDR+DF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISHFSCLKDRYDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQE FD  QFQKAQAIS  HEMIQQTFNLFSTKDSSAA DETLLD+FYIEL QQLNDLE
Sbjct: 61  FPQEVFDGNQFQKAQAISAFHEMIQQTFNLFSTKDSSAAWDETLLDKFYIELFQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV QEVGV E  LM EDSILAVRKYFQRITLYL  KKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 ACVTQEVGVEEIALMNEDSILAVRKYFQRITLYLMGKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLKSKE 189
           LQK L+ K+
Sbjct: 181 LQKGLRRKD 189


>gi|10880985 interferon, alpha 17 [Homo sapiens]
          Length = 189

 Score =  295 bits (756), Expect = 1e-80
 Identities = 151/189 (79%), Positives = 168/189 (88%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL+F LL+A++VLSYKS  SLGCDLPQTHSLGNRRALILLAQM RISPFSCLKDRHDF 
Sbjct: 1   MALSFSLLMAVLVLSYKSICSLGCDLPQTHSLGNRRALILLAQMGRISPFSCLKDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
            PQEEFD  QFQK QAISVLHEMIQQTFNLFST+DSSAA +++LL++F  EL QQLN+LE
Sbjct: 61  LPQEEFDGNQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNNLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVG+ E+PLM EDSILAVRKYFQRITLYLTEKKYS CAWEVVRAEIMRS S S N
Sbjct: 121 ACVIQEVGMEETPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSLSFSTN 180

Query: 181 LQKRLKSKE 189
           LQK L+ K+
Sbjct: 181 LQKILRRKD 189


>gi|11067751 interferon, alpha 2 [Homo sapiens]
          Length = 188

 Score =  294 bits (753), Expect = 3e-80
 Identities = 155/189 (82%), Positives = 167/189 (88%), Gaps = 1/189 (0%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MALTF LLVAL+VLS KS  S+GCDLPQTHSLG+RR L+LLAQMRRIS FSCLKDRHDF 
Sbjct: 1   MALTFALLVALLVLSCKSSCSVGCDLPQTHSLGSRRTLMLLAQMRRISLFSCLKDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEF + QFQKA+ I VLHEMIQQ FNLFSTKDSSAA DETLLD+FY EL QQLNDLE
Sbjct: 61  FPQEEFGN-QFQKAETIPVLHEMIQQIFNLFSTKDSSAAWDETLLDKFYTELYQQLNDLE 119

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+Q VGV E+PLM EDSILAVRKYFQRITLYL EKKYS CAWEVVRAEIMRSFSLS N
Sbjct: 120 ACVIQGVGVTETPLMKEDSILAVRKYFQRITLYLKEKKYSPCAWEVVRAEIMRSFSLSTN 179

Query: 181 LQKRLKSKE 189
           LQ+ L+SKE
Sbjct: 180 LQESLRSKE 188


>gi|11128015 interferon, alpha 6 [Homo sapiens]
          Length = 189

 Score =  292 bits (747), Expect = 1e-79
 Identities = 153/189 (80%), Positives = 164/189 (86%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL F LL+ALVVLS KS  SL CDLPQTHSLG+RR ++LLAQMRRIS FSCLKDRHDF 
Sbjct: 1   MALPFALLMALVVLSCKSSCSLDCDLPQTHSLGHRRTMMLLAQMRRISLFSCLKDRHDFR 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKA+AISVLHE+IQQTFNLFSTKDSS A DE LLD+ Y EL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAEAISVLHEVIQQTFNLFSTKDSSVAWDERLLDKLYTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CVMQEV V  +PLM EDSILAVRKYFQRITLYLTEKKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 ACVMQEVWVGGTPLMNEDSILAVRKYFQRITLYLTEKKYSPCAWEVVRAEIMRSFSSSRN 180

Query: 181 LQKRLKSKE 189
           LQ+RL+ KE
Sbjct: 181 LQERLRRKE 189


>gi|71143135 interferon, alpha 7 [Homo sapiens]
          Length = 189

 Score =  288 bits (737), Expect = 2e-78
 Identities = 147/189 (77%), Positives = 165/189 (87%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MA +F LL+ ++VLSYKS  SLGCDLPQTHSL NRRALILLAQM RISPFSCLKDRH+F 
Sbjct: 1   MARSFSLLMVVLVLSYKSICSLGCDLPQTHSLRNRRALILLAQMGRISPFSCLKDRHEFR 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FP+EEFD  QFQK QAISVLHEMIQQTFNLFST+DSSAA +++LL++F  EL QQLNDLE
Sbjct: 61  FPEEEFDGHQFQKTQAISVLHEMIQQTFNLFSTEDSSAAWEQSLLEKFSTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CV+QEVGV E+PLM ED ILAVRKYFQRITLYL EKKYS CAWEVVRAEIMRSFS S N
Sbjct: 121 ACVIQEVGVEETPLMNEDFILAVRKYFQRITLYLMEKKYSPCAWEVVRAEIMRSFSFSTN 180

Query: 181 LQKRLKSKE 189
           L+K L+ K+
Sbjct: 181 LKKGLRRKD 189


>gi|194394174 interferon, alpha 13 precursor [Homo sapiens]
          Length = 190

 Score =  279 bits (713), Expect = 1e-75
 Identities = 147/189 (77%), Positives = 159/189 (84%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MA  F LL+ALVVLS KS  SLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDF 
Sbjct: 2   MASPFALLMALVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 61

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKA AISVLHE+IQQ FNLF+TKDSSAA DE LLD+F  EL QQLNDLE
Sbjct: 62  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 121

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CVMQE  V E+PLM  DSILAV+KYF+RITLYLTEKKYS CAWEVVRAEIMRS SLS N
Sbjct: 122 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 181

Query: 181 LQKRLKSKE 189
           LQ+RL+ KE
Sbjct: 182 LQERLRRKE 190


>gi|13128950 interferon, alpha 1 [Homo sapiens]
          Length = 189

 Score =  277 bits (709), Expect = 3e-75
 Identities = 146/189 (77%), Positives = 158/189 (83%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MA  F LL+ LVVLS KS  SLGCDLP+THSL NRR L+LLAQM RISP SCL DRHDF 
Sbjct: 1   MASPFALLMVLVVLSCKSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFG 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQEEFD  QFQKA AISVLHE+IQQ FNLF+TKDSSAA DE LLD+F  EL QQLNDLE
Sbjct: 61  FPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELYQQLNDLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +CVMQE  V E+PLM  DSILAV+KYF+RITLYLTEKKYS CAWEVVRAEIMRS SLS N
Sbjct: 121 ACVMQEERVGETPLMNADSILAVKKYFRRITLYLTEKKYSPCAWEVVRAEIMRSLSLSTN 180

Query: 181 LQKRLKSKE 189
           LQ+RL+ KE
Sbjct: 181 LQERLRRKE 189


>gi|4504605 interferon, omega 1 [Homo sapiens]
          Length = 195

 Score =  213 bits (543), Expect = 6e-56
 Identities = 112/189 (59%), Positives = 133/189 (70%)

Query: 1   MALTFYLLVALVVLSYKSFSSLGCDLPQTHSLGNRRALILLAQMRRISPFSCLKDRHDFE 60
           MAL F LL ALV+ SY    SLGCDLPQ H L +R  L+LL QMRRISPF CLKDR DF 
Sbjct: 1   MALLFPLLAALVMTSYSPVGSLGCDLPQNHGLLSRNTLVLLHQMRRISPFLCLKDRRDFR 60

Query: 61  FPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLE 120
           FPQE     Q QKA  +SVLHEM+QQ F+LF T+ SSAA + TLLD+ +  L QQL  LE
Sbjct: 61  FPQEMVKGSQLQKAHVMSVLHEMLQQIFSLFHTERSSAAWNMTLLDQLHTGLHQQLQHLE 120

Query: 121 SCVMQEVGVIESPLMYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSIN 180
           +C++Q VG  ES        L +R+YFQ I +YL EKKYS CAWEVVR EIM+S  LS N
Sbjct: 121 TCLLQVVGEGESAGAISSPALTLRRYFQGIRVYLKEKKYSDCAWEVVRMEIMKSLFLSTN 180

Query: 181 LQKRLKSKE 189
           +Q+RL+SK+
Sbjct: 181 MQERLRSKD 189


>gi|28882045 interferon, epsilon [Homo sapiens]
          Length = 208

 Score =  101 bits (251), Expect = 4e-22
 Identities = 54/155 (34%), Positives = 88/155 (56%)

Query: 34  NRRALILLAQMRRISPFSCLKDRHDFEFPQEEFDDKQFQKAQAISVLHEMIQQTFNLFST 93
           N+ +L LL +++ +S   CL  R +F  PQ+    +Q+QK   +++LHEM+QQ F+LF  
Sbjct: 35  NQESLKLLNKLQTLSIQQCLPHRKNFLLPQKSLSPQQYQKGHTLAILHEMLQQIFSLFRA 94

Query: 94  KDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGVIESPLMYEDSILAVRKYFQRITLY 153
             S    +E   ++F I+L QQL  LE+ +  E   +   L  ++  L V+ YF+RI  Y
Sbjct: 95  NISLDGWEENHTEKFLIQLHQQLEYLEALMGLEAEKLSGTLGSDNLRLQVKMYFRRIHDY 154

Query: 154 LTEKKYSSCAWEVVRAEIMRSFSLSINLQKRLKSK 188
           L  + YS+CAW +V+ EI R      +L ++L  +
Sbjct: 155 LENQDYSTCAWAIVQVEISRCLFFVFSLTEKLSKQ 189


>gi|4504603 interferon, beta 1, fibroblast [Homo sapiens]
          Length = 187

 Score = 88.2 bits (217), Expect = 4e-18
 Identities = 49/131 (37%), Positives = 74/131 (56%), Gaps = 14/131 (10%)

Query: 52  CLKDRHDFEFPQEEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIE 111
           CLKDR +F+ P+E    +QFQK  A   ++EM+Q  F +F    SS   +ET+++     
Sbjct: 52  CLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQDSSSTGWNETIVENLLAN 111

Query: 112 LDQQLNDLESCVMQEVGVIESPLMYED-------SILAVRKYFQRITLYLTEKKYSSCAW 164
           +  Q+N L++       V+E  L  ED       S L +++Y+ RI  YL  K+YS CAW
Sbjct: 112 VYHQINHLKT-------VLEEKLEKEDFTRGKLMSSLHLKRYYGRILHYLKAKEYSHCAW 164

Query: 165 EVVRAEIMRSF 175
            +VR EI+R+F
Sbjct: 165 TIVRVEILRNF 175


>gi|112789564 interferon kappa precursor [Homo sapiens]
          Length = 207

 Score = 78.6 bits (192), Expect = 3e-15
 Identities = 59/170 (34%), Positives = 77/170 (45%), Gaps = 21/170 (12%)

Query: 21  SLGCDLPQTHSLGNRRA----LILLAQMRRISPFSCLKDRHDFEFPQEEFDDKQFQKAQA 76
           SL C+L   H    RR     L  L+ M    P  CL++   FE PQE     Q  K   
Sbjct: 27  SLDCNLLNVHL---RRVTWQNLRHLSSMSNSFPVECLRENIAFELPQEFLQYTQPMKRDI 83

Query: 77  ISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGVIESPLMY 136
               +EM  Q FN+FS + +     E  L +  I LDQQ   L  C+ ++    E     
Sbjct: 84  KKAFYEMSLQAFNIFS-QHTFKYWKERHLKQIQIGLDQQAEYLNQCLEEDKNENEDMKEM 142

Query: 137 ED-------------SILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMR 173
           ++             S L +R+YF RI  +L EKKYS CAWE+VR EI R
Sbjct: 143 KENEMKPSEARVPQLSSLELRRYFHRIDNFLKEKKYSDCAWEIVRVEIRR 192


>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
            [Homo sapiens]
          Length = 1354

 Score = 32.3 bits (72), Expect = 0.25
 Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 11/135 (8%)

Query: 64   EEFDDKQFQKAQAISVLHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLESCV 123
            EE + +  +K Q +    E +    +L  TK  S  L   LL+E Y EL Q+     S  
Sbjct: 868  EEKNRENLKKIQELQNEKETLATQLDLAETKAESEQLARGLLEEQYFELTQESKKAASRN 927

Query: 124  MQEV--------GVIESPLMYEDSILAVRKYFQRIT--LYLTEKKYSSCAWEVVRAEIMR 173
             QE+         + E+  M    I  +R+  + +T  +   E++Y     E + + +  
Sbjct: 928  RQEITDKDHTVSRLEEANSMLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEI-SNLKA 986

Query: 174  SFSLSINLQKRLKSK 188
            +F  +IN ++ LK++
Sbjct: 987  AFEKNINTERTLKTQ 1001


>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 80   LHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGV---------- 129
            L E  QQT +    ++         L +  I+L+QQ++DLE  + QE  +          
Sbjct: 1005 LQEAHQQTLDDLQAEEDKV----NTLTKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKRK 1060

Query: 130  IESPL-MYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSINLQKRLK 186
            +E  L + ++SI+ +    Q++   L +K++       ++++I    +L I LQK++K
Sbjct: 1061 LEGDLKLAQESIMDIENEKQQLDEKLKKKEFEI---SNLQSKIEDEQALGIQLQKKIK 1115


>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
            sapiens]
          Length = 1941

 Score = 28.9 bits (63), Expect = 2.8
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 18/118 (15%)

Query: 80   LHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGV---------- 129
            L E  QQT +    ++         L +  I+L+QQ++DLE  + QE  +          
Sbjct: 1005 LQEAHQQTLDDLQAEEDKV----NTLTKAKIKLEQQVDDLEGSLEQEKKLRMDLERAKRK 1060

Query: 130  IESPL-MYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSINLQKRLK 186
            +E  L + ++SI+ +    Q++   L +K++       ++++I    +L I LQK++K
Sbjct: 1061 LEGDLKLAQESIMDIENEKQQLDEKLKKKEFEI---SNLQSKIEDEQALGIQLQKKIK 1115


>gi|33147089 apolipoprotein B mRNA editing enzyme, catalytic
           polypeptide-like 3H [Homo sapiens]
          Length = 183

 Score = 27.7 bits (60), Expect = 6.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 149 RITLYLTEKKYSSCAWEVV 167
           ++T YLT    SSCAWE+V
Sbjct: 75  QVTCYLTWSPCSSCAWELV 93


>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
            sapiens]
          Length = 1940

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 14/87 (16%)

Query: 111  ELDQQLNDLESCVMQEVGV----------IESPL-MYEDSILAVRKYFQRITLYLTEKKY 159
            +L+QQ+ DLES + QE  +          +E  L + ++SIL +    Q++   L +K +
Sbjct: 1027 KLEQQVEDLESSLEQEKKLRVDLERNKRKLEGDLKLAQESILDLENDKQQLDERLKKKDF 1086

Query: 160  SSCAWEVVRAEIMRSFSLSINLQKRLK 186
              C    +++++    +L +  QK++K
Sbjct: 1087 EYCQ---LQSKVEDEQTLGLQFQKKIK 1110


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 96   SSAALDETLLDEFYIELDQQLND----LESCVMQEVGVIESPLMYEDSILAVRKYFQRIT 151
            S+    E + +E YI LD++L +    L  C+     ++E P +Y +     + +++ + 
Sbjct: 4513 SNLQTQENMTEEAYINLDKKLFELFLTLSQCLSSVEEMLEMPRLYREDGSGQQVHYETLA 4572

Query: 152  LYL 154
            L L
Sbjct: 4573 LEL 4575


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 96   SSAALDETLLDEFYIELDQQLND----LESCVMQEVGVIESPLMYEDSILAVRKYFQRIT 151
            S+    E + +E YI LD++L +    L  C+     ++E P +Y +     + +++ + 
Sbjct: 4513 SNLQTQENMTEEAYINLDKKLFELFLTLSQCLSSVEEMLEMPRLYREDGSGQQVHYETLA 4572

Query: 152  LYL 154
            L L
Sbjct: 4573 LEL 4575


>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
            sapiens]
          Length = 1939

 Score = 27.3 bits (59), Expect = 8.0
 Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 18/118 (15%)

Query: 80   LHEMIQQTFNLFSTKDSSAALDETLLDEFYIELDQQLNDLESCVMQEVGV---------- 129
            L E  QQT +    ++         L +  I+L+QQ++DLE  + QE  +          
Sbjct: 1003 LQEAHQQTLDDLQAEEDKV----NTLTKAKIKLEQQVDDLEGSLEQEKKIRMDLERAKRK 1058

Query: 130  IESPL-MYEDSILAVRKYFQRITLYLTEKKYSSCAWEVVRAEIMRSFSLSINLQKRLK 186
            +E  L + ++S + +    Q++   L +K++       ++++I    +L + LQK++K
Sbjct: 1059 LEGDLKLAQESTMDIENDKQQLDEKLKKKEFEMSG---LQSKIEDEQALGMQLQKKIK 1113


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,046,458
Number of Sequences: 37866
Number of extensions: 231906
Number of successful extensions: 605
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 31
length of query: 189
length of database: 18,247,518
effective HSP length: 96
effective length of query: 93
effective length of database: 14,612,382
effective search space: 1358951526
effective search space used: 1358951526
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.