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Search of human proteins with 42476024
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|42476024 THUMP domain containing 1 [Homo sapiens]
(353 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42476024 THUMP domain containing 1 [Homo sapiens] 709 0.0
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 34 0.17
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 34 0.23
gi|32484979 adaptor-related protein complex 3, beta 1 subunit [H... 32 0.66
gi|116235480 leucine zipper transcription regulator 2 [Homo sapi... 32 0.86
gi|117968621 MACRO domain containing 2 isoform 1 [Homo sapiens] 32 0.86
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 32 1.1
gi|239753738 PREDICTED: hypothetical protein [Homo sapiens] 32 1.1
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 32 1.1
gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens] 32 1.1
gi|189458821 transglutaminase 3 precursor [Homo sapiens] 32 1.1
gi|110825963 poly (ADP-ribose) polymerase family, member 2 isofo... 32 1.1
gi|110825961 poly (ADP-ribose) polymerase family, member 2 isofo... 32 1.1
gi|21264355 SWI/SNF-related matrix-associated actin-dependent re... 32 1.1
gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo sapi... 32 1.1
gi|42518068 trans-golgi network protein 2 [Homo sapiens] 31 1.5
gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 31 1.9
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu... 31 1.9
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre... 31 1.9
gi|153945755 zinc finger protein 608 [Homo sapiens] 31 1.9
gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide i... 31 1.9
gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide iso... 31 1.9
gi|31742484 erythroid differentiation-related factor 1 [Homo sap... 30 2.5
gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens] 30 3.3
gi|31543392 peroxisome proliferator-activated receptor gamma, co... 30 3.3
gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens] 30 4.3
gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens] 30 4.3
gi|48976054 hypothetical protein LOC79886 [Homo sapiens] 30 4.3
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens] 30 4.3
gi|118498347 DnaJ (Hsp40) homolog, subfamily C , member 25 [Homo... 30 4.3
>gi|42476024 THUMP domain containing 1 [Homo sapiens]
Length = 353
Score = 709 bits (1830), Expect = 0.0
Identities = 353/353 (100%), Positives = 353/353 (100%)
Query: 1 MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEE 60
MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEE
Sbjct: 1 MAAPAQQTTQPGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQGILITCNMNERKCVEE 60
Query: 61 AYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSV 120
AYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSV
Sbjct: 61 AYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAEAALKKEVGDIKASTEMRLRRFQSV 120
Query: 121 ESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYA 180
ESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYA
Sbjct: 121 ESGANNVVFIRTLGIEPEKLVHHILQDMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYA 180
Query: 181 ETFLEPWFKAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVV 240
ETFLEPWFKAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVV
Sbjct: 181 ETFLEPWFKAPNKGTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVV 240
Query: 241 VEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNT 300
VEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNT
Sbjct: 241 VEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNT 300
Query: 301 AEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNENDFS 353
AEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNENDFS
Sbjct: 301 AEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNENDFS 353
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 301 AEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNEND 351
A G N +P + + K TS V+ GAKPEL+ + TE N N+
Sbjct: 189 ALGTTNIDLPASLRTVPSAKETSRGIGVSSNGAKPELSEKVTEDGTRNPNE 239
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 33.9 bits (76), Expect = 0.23
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 10/97 (10%)
Query: 257 MLFRKYNLQEVVKSPKDPSQLNSKQGN-GKEAKLESADKSDQNNTAEGKNNQQVPENTEE 315
++ K +L E V+ K + +GN K+A LE+ +K D + Q +P TEE
Sbjct: 1745 LMSEKDSLSEEVQDLK-----HQIEGNVSKQANLEATEKHDNQTNVTEEGTQSIPGETEE 1799
Query: 316 LG----QTKPTSNPQVVNEGGAKPELASQATEGSKSN 348
T+PT + V + A P ++ + + N
Sbjct: 1800 QDSLSMSTRPTCSESVPSAKSANPAVSKDFSSHDEIN 1836
>gi|32484979 adaptor-related protein complex 3, beta 1 subunit [Homo
sapiens]
Length = 1094
Score = 32.3 bits (72), Expect = 0.66
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 11/91 (12%)
Query: 270 SPKDPSQLNSKQGN---GKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSNPQ 326
S +D S+ +S + + G+E+ LE+ + +N+ A+GK++ + E E +T +SN +
Sbjct: 712 SNEDSSEDSSSEQDSESGRESGLENKRTAKRNSKAKGKSDSEDGEKENEKSKTSDSSNDE 771
Query: 327 VV--------NEGGAKPELASQATEGSKSNE 349
+E ++PE S++ +K E
Sbjct: 772 SSSIEDSSSDSESESEPESESESRRVTKEKE 802
>gi|116235480 leucine zipper transcription regulator 2 [Homo
sapiens]
Length = 1060
Score = 32.0 bits (71), Expect = 0.86
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 265 QEVVKSPKDP------SQLNSKQGNGKEAKLESADKSDQN---NTAEGKNNQQVPENTEE 315
QEV+ P+ P S S + KE + ES+D++D+N NTA+ E+T+
Sbjct: 850 QEVISKPQTPLAARPRSISESSASSAKEDEKESSDEADKNSPRNTAQRGKLGDGKEHTKS 909
Query: 316 LG-------QTKPTSNPQVVNEGGAKPELASQATEGSKS 347
G ++KPT N + + S+ T + S
Sbjct: 910 SGFGWFSWFRSKPTKNASPAGDEDSSDSPDSEETPRASS 948
>gi|117968621 MACRO domain containing 2 isoform 1 [Homo sapiens]
Length = 425
Score = 32.0 bits (71), Expect = 0.86
Identities = 22/119 (18%), Positives = 51/119 (42%), Gaps = 9/119 (7%)
Query: 242 EIIKAVCCLSVVKDYMLFRK-----YNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSD 296
E+ + + C+ + D+ +++K +++ + + +D NG E K + +
Sbjct: 215 EVDRIIFCVFLEVDFKIYKKKMNEFFSVDDNNEEEEDVEMKEDSDENGPEEKQSVEEMEE 274
Query: 297 QNNTAEGKNNQQVP----ENTEELGQTKPTSNPQVVNEGGAKPELASQATEGSKSNEND 351
Q+ A+G N VP E E + + + + + +GG + + + + END
Sbjct: 275 QSQDADGVNTVTVPGPASEEAVEDCKDEDFAKDENITKGGEVTDHSVRDQDHPDGQEND 333
>gi|238624188 diffuse panbronchiolitis critical region 1 protein
[Homo sapiens]
Length = 1393
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 265 QEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNN---QQVPENTEELGQTKP 321
+ SP +P++ + N + ++ TA K + EN E K
Sbjct: 613 ENTTPSPAEPTENRERTANENTTPSPAGPTENREMTANEKTTLFPAEPTENRERTANEKT 672
Query: 322 TSNPQVVNEGGAKPELASQATEGSKSNEND 351
TS+P E G + A++ T S + +
Sbjct: 673 TSSPAEPTENGQRTPFANEKTTSSSAEPTE 702
>gi|239753738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 31.6 bits (70), Expect = 1.1
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 1 MAAPAQQTTQPGGGKRKGKAQYVLAKRARR---CDAGGPRQLEPGLQGILITCNMN---E 54
+A P+ PGG R+ +A +RA C AGG R+ +PG + C + +
Sbjct: 2 LALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAK 61
Query: 55 RKCVE 59
R CVE
Sbjct: 62 RGCVE 66
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis
critical region 1 [Homo sapiens]
Length = 1400
Score = 31.6 bits (70), Expect = 1.1
Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 265 QEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNN---QQVPENTEELGQTKP 321
+ SP +P++ + N + ++ TA K + EN E K
Sbjct: 675 ENTTPSPAEPTENRERTANENTTPSPAGPTENREMTANEKTTLFPAEPTENRERTANEKT 734
Query: 322 TSNPQVVNEGGAKPELASQATEGSKSNEND 351
TS+P E G + A++ T S + +
Sbjct: 735 TSSPAEPTENGQRTPFANEKTTSSSAEPTE 764
>gi|61676188 HECT, UBA and WWE domain containing 1 [Homo sapiens]
Length = 4374
Score = 31.6 bits (70), Expect = 1.1
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 9/73 (12%)
Query: 54 ERKCVEEAYSLLNEYGDDMYGPEKFTDKDQQPS-----GSEGEDDD----AEAALKKEVG 104
E EE S NE DD E+ ++D++ G EG++DD +E L ++
Sbjct: 2413 EEHTQEEDSSGSNEDEDDSQDEEEEEEEDEEDDQEDDEGEEGDEDDDDDGSEMELDEDYP 2472
Query: 105 DIKASTEMRLRRF 117
D+ AS +R RF
Sbjct: 2473 DMNASPLVRFERF 2485
>gi|189458821 transglutaminase 3 precursor [Homo sapiens]
Length = 693
Score = 31.6 bits (70), Expect = 1.1
Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 18/106 (16%)
Query: 194 GTFQIVYKSRNN-------SHVNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKA 246
GTF +++ N +H REE ++E AGI+ + S N++ + + E I +
Sbjct: 129 GTFILLFNPWLNVDSVFMGNHAEREEYVQEDAGII-FVGSTNRIGMIGWNFGQFEEDILS 187
Query: 247 VCCLSVVKDYMLFRKYNLQEVVKSPKDP--------SQLNSKQGNG 284
+ CLS++ + FR+ +V S DP + +NS NG
Sbjct: 188 I-CLSILDRSLNFRRDAATDVA-SRNDPKYVGRVLSAMINSNDDNG 231
>gi|110825963 poly (ADP-ribose) polymerase family, member 2 isoform
2 [Homo sapiens]
Length = 570
Score = 31.6 bits (70), Expect = 1.1
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 170 KAFLEDMKKYAETFLEPWFKAPNK-GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSEN 228
K FL+ K E E + K P K Q+ Y + EE ++ + L E+
Sbjct: 165 KKFLDKTKNNWED-REKFEKVPGKYDMLQMDYATNTQD----EEETKKEESLKSPLKPES 219
Query: 229 KVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAK 288
++DL V E+IK +C + +++ M+ KYN ++ +Q+ K G K
Sbjct: 220 QLDLR------VQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQI--KAGYQSLKK 271
Query: 289 LESADKSDQNNTA 301
+E ++ Q+ A
Sbjct: 272 IEDCIRAGQHGRA 284
>gi|110825961 poly (ADP-ribose) polymerase family, member 2 isoform
1 [Homo sapiens]
Length = 583
Score = 31.6 bits (70), Expect = 1.1
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 14/133 (10%)
Query: 170 KAFLEDMKKYAETFLEPWFKAPNK-GTFQIVYKSRNNSHVNREEVIRELAGIVCTLNSEN 228
K FL+ K E E + K P K Q+ Y + EE ++ + L E+
Sbjct: 178 KKFLDKTKNNWED-REKFEKVPGKYDMLQMDYATNTQD----EEETKKEESLKSPLKPES 232
Query: 229 KVDLTNPQYTVVVEIIKAVCCLSVVKDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAK 288
++DL V E+IK +C + +++ M+ KYN ++ +Q+ K G K
Sbjct: 233 QLDLR------VQELIKLICNVQAMEEMMMEMKYNTKKAPLGKLTVAQI--KAGYQSLKK 284
Query: 289 LESADKSDQNNTA 301
+E ++ Q+ A
Sbjct: 285 IEDCIRAGQHGRA 297
>gi|21264355 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin e1 [Homo sapiens]
Length = 411
Score = 31.6 bits (70), Expect = 1.1
Identities = 18/83 (21%), Positives = 37/83 (44%)
Query: 265 QEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSN 324
++ K ++ + ++Q ++ + ++ N E K+++ +P TEE + T +
Sbjct: 294 EQARKRQEEREKEAAEQAERSQSSIVPEEEQAANKGEEKKDDENIPMETEETHLEETTES 353
Query: 325 PQVVNEGGAKPELASQATEGSKS 347
Q EG + PE EG S
Sbjct: 354 QQNGEEGTSTPEDKESGQEGVDS 376
>gi|38327634 DEAD (Asp-Glu-Ala-Asp) box polypeptide 18 [Homo
sapiens]
Length = 670
Score = 31.6 bits (70), Expect = 1.1
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 263 NLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSDQNN---TAEGKNNQQVPENTEE 315
N + K K +N + + K+AK E+ KS++ + T E +NN + P+N E+
Sbjct: 104 NSESKKKKKKKRKMVNDAEPDTKKAKTENKGKSEEESAETTKETENNVEKPDNDED 159
>gi|42518068 trans-golgi network protein 2 [Homo sapiens]
Length = 437
Score = 31.2 bits (69), Expect = 1.5
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 269 KSPKDPSQLNSKQGNGKEAKLESADKSD-QNNTAEGKNNQQVPENTEELGQTKPTSNP 325
++PKD S +K G ++ ++ KS + T++ N+ VPE +KP SNP
Sbjct: 215 QTPKDGS---NKSGAEEQGPIDGPSKSGAEEQTSKDSPNKVVPEQPSRKDHSKPISNP 269
>gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens]
Length = 1054
Score = 30.8 bits (68), Expect = 1.9
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 11/89 (12%)
Query: 272 KDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKP--------TS 323
K+P + ++K+ E +E D+ D++NT+E +N + E LG TK
Sbjct: 5 KEPLEFHAKRPWRPEEAVEDPDEEDEDNTSEAENGFSL-EEVLRLGGTKQDYLMLATLDE 63
Query: 324 NPQVVNEG--GAKPELASQATEGSKSNEN 350
N +V++ G GA +L E N N
Sbjct: 64 NEEVIDGGKKGAIDDLQQGELEAFIQNLN 92
>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
precursor [Homo sapiens]
Length = 513
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 273 DPSQLNSKQGN------GKEAKLESADKSDQNNTAEGKNNQQVPENTEEL---GQTKPTS 323
DP + S++GN G ++K ES + S+Q NT + +Q + + ++ +
Sbjct: 219 DPESIRSERGNSRMNSAGMKSK-ESGENSEQANTQDSGGSQLLEHPSRKIFRKSRISEED 277
Query: 324 NPQVVNEGGAKPELASQATEGSKSNENDFS 353
+ +++ E+ S +TE S S + S
Sbjct: 278 DRSELDDNNTMEEVKSDSTENSNSRDTGLS 307
>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
precursor [Homo sapiens]
Length = 497
Score = 30.8 bits (68), Expect = 1.9
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 273 DPSQLNSKQGN------GKEAKLESADKSDQNNTAEGKNNQQVPENTEEL---GQTKPTS 323
DP + S++GN G ++K ES + S+Q NT + +Q + + ++ +
Sbjct: 203 DPESIRSERGNSRMNSAGMKSK-ESGENSEQANTQDSGGSQLLEHPSRKIFRKSRISEED 261
Query: 324 NPQVVNEGGAKPELASQATEGSKSNENDFS 353
+ +++ E+ S +TE S S + S
Sbjct: 262 DRSELDDNNTMEEVKSDSTENSNSRDTGLS 291
>gi|153945755 zinc finger protein 608 [Homo sapiens]
Length = 1512
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 272 KDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSNPQ 326
K+ + +KQ N A + A + + N K VP TEE G+++ SN Q
Sbjct: 1136 KELGKEETKQKNMPSATISKAPSTPEPNKNHSKLGPSVPNKTEETGKSQLLSNHQ 1190
>gi|215490093 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform A [Homo sapiens]
Length = 357
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 285 KEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSN 324
+EA++ KS++ E K ++ E EE GQ +PT N
Sbjct: 41 EEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQPTGN 80
>gi|6912256 ATPase, (Na+)/K+ transporting, beta 4 polypeptide
isoform B [Homo sapiens]
Length = 353
Score = 30.8 bits (68), Expect = 1.9
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 285 KEAKLESADKSDQNNTAEGKNNQQVPENTEELGQTKPTSN 324
+EA++ KS++ E K ++ E EE GQ +PT N
Sbjct: 41 EEARVTVVPKSEEEEEEEEKEEEEEEEKEEEEGQGQPTGN 80
>gi|31742484 erythroid differentiation-related factor 1 [Homo
sapiens]
Length = 1204
Score = 30.4 bits (67), Expect = 2.5
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 52 MNERKCVEEAYSLLNEYGDDMYG--PEKFTDKDQQPS---GSEGEDDDAEAALKKEVGDI 106
++E K E + S LNE D+ Y E+ D D+ S S+ DD A+ K VG++
Sbjct: 480 LDEPKKEENSESPLNENSDESYSEEEEEMPDSDENGSYSTSSDPSDDSKAVAIIKSVGEL 539
>gi|132626688 mediator of DNA-damage checkpoint 1 [Homo sapiens]
Length = 2089
Score = 30.0 bits (66), Expect = 3.3
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 288 KLESADKSDQNNTAE-------GKNNQQVPENTEELGQTKPTSNPQVVNEGGAKPELASQ 340
KLE + +DQ T E G+ N+ + E + T P P + PE SQ
Sbjct: 1413 KLEPSTSTDQPVTPEPTSQATRGRTNRSSVKTPETVVPTAPELQPSTSTDQPVTPEPTSQ 1472
Query: 341 ATEG 344
AT G
Sbjct: 1473 ATRG 1476
>gi|31543392 peroxisome proliferator-activated receptor gamma,
coactivator 1 beta [Homo sapiens]
Length = 1023
Score = 30.0 bits (66), Expect = 3.3
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 14/100 (14%)
Query: 11 PGGGKRKGKAQYVLAKRARRCDAGGPRQLEPGLQ------------GILITCNMNE--RK 56
P G +AQ + R CDAG P + L+ G+L T E
Sbjct: 723 PQQGAPWAEAQAPGREEDRSCDAGAPPKDSTLLRDHEIRASLTKHFGLLETALEEEDLAS 782
Query: 57 CVEEAYSLLNEYGDDMYGPEKFTDKDQQPSGSEGEDDDAE 96
C Y + E G F ++++ G E E+DD E
Sbjct: 783 CKSPEYDTVFEDSSSSSGESSFLPEEEEEEGEEEEEDDEE 822
>gi|22538461 nuclear receptor co-repressor 1 [Homo sapiens]
Length = 2440
Score = 29.6 bits (65), Expect = 4.3
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 15/105 (14%)
Query: 254 KDYMLFRKYNLQEVVKSPKDPSQLNSKQGNGKEAKLESADKSD-QNNTAEGKNNQQVPEN 312
++ + R ++V + +D ++ K+ K+ + E +K D + NT E E
Sbjct: 501 RNQQIARPSQEEKVEEKEEDKAEKTEKKEEEKKDEEEKDEKEDSKENTKEKDKIDGTAEE 560
Query: 313 TEELGQTKP----TSNPQ----------VVNEGGAKPELASQATE 343
TEE Q P T+N Q + NE A A+ ATE
Sbjct: 561 TEEREQATPRGRKTANSQGRRKGRITRSMTNEAAAASAAAAAATE 605
>gi|38569480 megakaryoblastic leukemia 2 protein [Homo sapiens]
Length = 1049
Score = 29.6 bits (65), Expect = 4.3
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 147 DMYKTKKKKTRVILRMLPISGTCKAFLEDMKKYAE 181
D K + KT + LR LP+SGT +E +K Y E
Sbjct: 401 DDLKVSELKTELKLRGLPVSGTKPDLIERLKPYQE 435
>gi|48976054 hypothetical protein LOC79886 [Homo sapiens]
Length = 361
Score = 29.6 bits (65), Expect = 4.3
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 268 VKSPKDPSQLNSKQGNGKEAKLESADKSDQNNTAEGKNNQ-----QVPENT--EELGQ 318
V+ K P L KQG G+++ + S + ++ EG N+ + PENT E GQ
Sbjct: 233 VRENKQPEGLELKQGKGEDSDVLSINADAYDSDIEGPCNEEAAAPEAPENTVQSEAGQ 290
>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
Length = 600
Score = 29.6 bits (65), Expect = 4.3
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 280 KQGNGKEAKLESADKSDQNNT-----AEGKNNQQVPENTEELGQTKPTSNPQVVNEGGAK 334
K+G G + +K +N A+ + + PE G TKP+ P V E A
Sbjct: 256 KRGTGNTDTKKDDEKVKKNEPLHEKEAKDDSKTKTPEKQTPSGPTKPSEGPAKVEEEAA- 314
Query: 335 PELASQATEGSKSNENDFS 353
P + + E K+N+ + +
Sbjct: 315 PSIFDEPLERVKNNDPEMT 333
>gi|118498347 DnaJ (Hsp40) homolog, subfamily C , member 25 [Homo
sapiens]
Length = 360
Score = 29.6 bits (65), Expect = 4.3
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 235 PQYTVVVEIIKAVCCLSVVKDYMLFRKYN-----LQEVVKSPKDPSQLNSKQGNGKEAKL 289
P+ V V I+ +VC +SV + + + YN L V K +++ +QG K+AK
Sbjct: 144 PKVDVRVVILVSVCAISVFQFFSWWNSYNKAISYLATVPKYRIQATEIAKQQGLLKKAKE 203
Query: 290 ESADKSDQNNTAEGKNN 306
+ +K + + + N
Sbjct: 204 KGKNKKSKEEIRDEEEN 220
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.310 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,968,633
Number of Sequences: 37866
Number of extensions: 648310
Number of successful extensions: 2250
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 2215
Number of HSP's gapped (non-prelim): 93
length of query: 353
length of database: 18,247,518
effective HSP length: 103
effective length of query: 250
effective length of database: 14,347,320
effective search space: 3586830000
effective search space used: 3586830000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.