Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 41393614

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
         (216 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa...   432   e-121
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa...   432   e-121
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]          372   e-103
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]           363   e-101
gi|10190714 RAS-related protein RAB-22A [Homo sapiens]                188   3e-48
gi|33589861 RAB31, member RAS oncogene family [Homo sapiens]          181   5e-46
gi|11967981 RAB17, member RAS oncogene family [Homo sapiens]          176   1e-44
gi|7661922 RAB21, member RAS oncogene family [Homo sapiens]           170   1e-42
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]          169   2e-42
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa...   166   2e-41
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...   165   2e-41
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa...   164   4e-41
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]          164   4e-41
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]        160   6e-40
gi|4758984 Ras-related protein Rab-11A [Homo sapiens]                 157   5e-39
gi|116812567 RAB25 [Homo sapiens]                                     157   8e-39
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]           156   1e-38
gi|21361884 RAB2B protein isoform 1 [Homo sapiens]                    155   2e-38
gi|117938299 RAB6C-like [Homo sapiens]                                150   6e-37
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]           150   8e-37
gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens]         149   2e-36
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa...   148   4e-36
gi|19923483 GTPase Rab14 [Homo sapiens]                               148   4e-36
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa...   147   5e-36
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]            147   5e-36
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]            147   5e-36
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]          147   5e-36
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]         146   1e-35
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]           146   1e-35
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]         146   1e-35

>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
           sapiens]
          Length = 216

 Score =  432 bits (1110), Expect = e-121
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
           MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
Sbjct: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60

Query: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
           QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
Sbjct: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120

Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
           RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
Sbjct: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180

Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
           KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
Sbjct: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216


>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
           sapiens]
          Length = 216

 Score =  432 bits (1110), Expect = e-121
 Identities = 216/216 (100%), Positives = 216/216 (100%)

Query: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
           MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
Sbjct: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60

Query: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
           QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
Sbjct: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120

Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
           RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
Sbjct: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180

Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
           KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
Sbjct: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216


>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
          Length = 215

 Score =  372 bits (956), Expect = e-103
 Identities = 188/216 (87%), Positives = 198/216 (91%), Gaps = 1/216 (0%)

Query: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
           MA RG A RPNGP  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHE+QESTIGAAFLT
Sbjct: 1   MASRG-ATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59

Query: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
           QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN ++FARAKNWVKELQ
Sbjct: 60  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 119

Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
           RQASPNIVIAL+GNKADLA+KRAV+FQEAQ+YADDNSLLFMETSAKT+MNVNEIFMAIAK
Sbjct: 120 RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179

Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
           KLPKNEPQN      R RGVDL E    +R+QCCSN
Sbjct: 180 KLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN 215


>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
          Length = 215

 Score =  363 bits (933), Expect = e-101
 Identities = 180/209 (86%), Positives = 195/209 (93%)

Query: 8   ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
           ARPNG    +KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ+VCLDD
Sbjct: 7   ARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66

Query: 68  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
           TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN +TFARAK WVKELQRQASP+I
Sbjct: 67  TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126

Query: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
           VIALAGNKADLA+KR VE++EAQAYADDNSLLFMETSAKTAMNVN++F+AIAKKLPK+EP
Sbjct: 127 VIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186

Query: 188 QNATGAPGRNRGVDLQENNPASRSQCCSN 216
           QN  GA GR+RGVDL E +  ++SQCCSN
Sbjct: 187 QNLGGAAGRSRGVDLHEQSQQNKSQCCSN 215


>gi|10190714 RAS-related protein RAB-22A [Homo sapiens]
          Length = 194

 Score =  188 bits (478), Expect = 3e-48
 Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 4/194 (2%)

Query: 21  QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
           + K+ LLG++ VGKSS+V RFV+  F      TIGA+F+T+TV   +   KF IWDTAGQ
Sbjct: 5   ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64

Query: 81  ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 140
           ER+ +LAPMYYRG+ AAI+VYDIT  +TF+  KNWVKEL++   PNIV+A+AGNK DL  
Sbjct: 65  ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124

Query: 141 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGV 200
            R V  ++A+ YAD    +F+ETSAK A+N+NE+F+ I++++P  +       P   +G 
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTD----ANLPSGGKGF 180

Query: 201 DLQENNPASRSQCC 214
            L+      +  CC
Sbjct: 181 KLRRQPSEPKRSCC 194


>gi|33589861 RAB31, member RAS oncogene family [Homo sapiens]
          Length = 195

 Score =  181 bits (458), Expect = 5e-46
 Identities = 90/196 (45%), Positives = 129/196 (65%), Gaps = 4/196 (2%)

Query: 19  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
           I + K+ LLG++ VGKSS+V RFV+  F      TIGA+F+T+TV   +   KF IWDTA
Sbjct: 4   IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 63

Query: 79  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
           GQER+HSLAPMYYRG+ AA++VYDIT  D+F   K WVKEL+     NIV+A+AGNK DL
Sbjct: 64  GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 123

Query: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNR 198
           +  R V  ++A+ YA+    + +ETSAK A+N+ E+F  I++++P  +P       G N 
Sbjct: 124 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE----NGNNG 179

Query: 199 GVDLQENNPASRSQCC 214
            + +++    +  +CC
Sbjct: 180 TIKVEKPTMQASRRCC 195


>gi|11967981 RAB17, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score =  176 bits (447), Expect = 1e-44
 Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 4/208 (1%)

Query: 10  PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTT 69
           P   AA ++   FKLVLLG  +VGKSSL LR+VK  F      T+G AF T+ V +  T+
Sbjct: 8   PQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDVGATS 66

Query: 70  VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP-NIV 128
           +K EIWDTAGQE+YHS+  +Y+RGA AA++VYDIT  D+F +A+ W+K+L+ +  P  ++
Sbjct: 67  LKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVL 126

Query: 129 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
           + L GNK DL+ +R V FQE + +AD   LLFMETSAK    V+E+F  +A++L +   +
Sbjct: 127 VMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDE 186

Query: 189 NATGAPGRNRGVDLQENNPASRSQCCSN 216
                 G +  V L +  PA +++CC++
Sbjct: 187 EGQALRG-DAAVALNK-GPARQAKCCAH 212


>gi|7661922 RAB21, member RAS oncogene family [Homo sapiens]
          Length = 225

 Score =  170 bits (430), Expect = 1e-42
 Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 12/226 (5%)

Query: 1   MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
           MA  GG     G AA  +   FK+VLLGE  VGK+SLVLR+ + +F++   +T+ A+FLT
Sbjct: 1   MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT 58

Query: 61  QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
           + + +    V   IWDTAGQER+H+L P+YYR +  AI+VYDIT+ D+F + KNWVKEL+
Sbjct: 59  KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 118

Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
           +     I + + GNK DL  +R V  QEA++YA+        TSAK    + E+F+ + K
Sbjct: 119 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 178

Query: 181 KL------PKNEPQNATGAPG-RNRGVDLQENNPASRSQ---CCSN 216
           ++       +    N +  PG   RGV + ++ P +++    CCS+
Sbjct: 179 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSS 224


>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
          Length = 208

 Score =  169 bits (427), Expect = 2e-42
 Identities = 83/199 (41%), Positives = 125/199 (62%), Gaps = 1/199 (0%)

Query: 16  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
           GN + +FKLV LGE +VGK+SL+ RF+   F    ++TIG  FL++T+ L+D TV+ ++W
Sbjct: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67

Query: 76  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
           DTAGQER+ SL P Y R +  A+VVYDITN ++F +   W+ +++ +   +++I L GNK
Sbjct: 68  DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127

Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
            DLA KR +  +E +  A + S++F+ETSAKT  NV ++F  +A  LP  E        G
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187

Query: 196 R-NRGVDLQENNPASRSQC 213
             +  +D  +  PAS   C
Sbjct: 188 MIDIKLDKPQEPPASEGGC 206


>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
           sapiens]
          Length = 208

 Score =  166 bits (419), Expect = 2e-41
 Identities = 82/202 (40%), Positives = 127/202 (62%), Gaps = 7/202 (3%)

Query: 16  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
           GN + +FKLV LGE +VGK+SL+ RF+   F    ++TIG  FL++T+ L+D T++ ++W
Sbjct: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67

Query: 76  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
           DTAGQER+ SL P Y R + AA+VVYDITN ++F +   W+ +++ +   +++I L GNK
Sbjct: 68  DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127

Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
            DLA KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP  E   +T    
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184

Query: 196 RNRGVDLQ----ENNPASRSQC 213
           R   +D++    +  P S   C
Sbjct: 185 REDMIDIKLEKPQEQPVSEGGC 206


>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score =  165 bits (418), Expect = 2e-41
 Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +T+ LD  T+K +IWDTAGQE
Sbjct: 12  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   IVVYD+T+ ++F   K W++E+ R AS N+   L GNK DL +K
Sbjct: 72  RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           + V++  A+ +AD   + F+ETSAK A NV + FM +A ++ K     AT        V 
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191

Query: 202 LQENNPASRS--QCC 214
           +Q + P  +S   CC
Sbjct: 192 IQ-STPVKQSGGGCC 205


>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
           sapiens]
          Length = 208

 Score =  164 bits (416), Expect = 4e-41
 Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 7/202 (3%)

Query: 16  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
           GN + +FKLV LGE +VGK+SL+ RF+   F    ++TIG  FL++T+ L+D TV+ ++W
Sbjct: 8   GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67

Query: 76  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
           DTAGQER+ SL P Y R +  A+VVYDITN ++F +   W+ +++ +   +++I L GNK
Sbjct: 68  DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127

Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
            DLA KR V  +E +  A + +++F+ETSAK   NV ++F  +A  LP  E   +T    
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184

Query: 196 RNRGVDLQ----ENNPASRSQC 213
           R   +D++    +  P S   C
Sbjct: 185 REDMIDIKLEKPQEQPVSEGGC 206


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score =  164 bits (416), Expect = 4e-41
 Identities = 85/193 (44%), Positives = 120/193 (62%), Gaps = 1/193 (0%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGKS L+LRF    + E   STIG  F  +T+ LD  T+K +IWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   IVVYD+T+ +++A  K W++E+ R AS N+   L GNK+DL +K
Sbjct: 69  RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKN-EPQNATGAPGRNRGV 200
           + V+   A+ +AD   + F+ETSAK A NV + FM +A ++ K   P  A+G    N  +
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188

Query: 201 DLQENNPASRSQC 213
           D     PA    C
Sbjct: 189 DSTPVKPAGGGCC 201


>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score =  160 bits (406), Expect = 6e-40
 Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 13/207 (6%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           RY ++   YYRGA  A++VYDI    T+   + W+KEL+  A  NIVI L GNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATG-------AP 194
           RAV   EA+A+A+ N+L F+ETSA  + NV E F  I  ++ +   Q           +P
Sbjct: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191

Query: 195 GRNRGVDLQ-----ENNPASRSQCCSN 216
           G N  VD+      +    ++ QCC N
Sbjct: 192 G-NNVVDISVPPTTDGQKPNKLQCCQN 217


>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
          Length = 216

 Score =  157 bits (398), Expect = 5e-39
 Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 15/207 (7%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK+VL+G+S VGKS+L+ RF + +F+   +STIG  F T+++ +D  T+K +IWDTAGQE
Sbjct: 12  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           RY ++   YYRGA  A++VYDI    T+   + W+KEL+  A  NIVI L GNK+DL   
Sbjct: 72  RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
           RAV   EA+A+A+ N L F+ETSA  + NV         EI+  +++K   +  +N   +
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDM-S 190

Query: 194 PGRN----RGVDLQENNPASRSQCCSN 216
           P  N          EN P  + QCC N
Sbjct: 191 PSNNVVPIHVPPTTENKP--KVQCCQN 215


>gi|116812567 RAB25 [Homo sapiens]
          Length = 213

 Score =  157 bits (396), Expect = 8e-39
 Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 11/201 (5%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK+VL+GES VGK++L+ RF + +F     +TIG  F T+TV L    VK +IWDTAG E
Sbjct: 13  FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 72

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           RY ++   YYRGA  A++V+D+T   T+A  + W+KEL   A   IV+ L GNK+DL+  
Sbjct: 73  RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 132

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
           R V  +EA+ +A++N LLF+ETSA  + NV         EIF  ++K+   +   NA   
Sbjct: 133 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITL 192

Query: 194 PGRNRGVDLQENNPASRSQCC 214
                G   QE  P  +  CC
Sbjct: 193 GSAQAG---QEPGPGEKRACC 210


>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
          Length = 212

 Score =  156 bits (394), Expect = 1e-38
 Identities = 75/195 (38%), Positives = 120/195 (61%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + + +D   +K +IWDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
            + S+   YYRGA  A++VYDIT  DTF     W+++ ++ ++ N+VI L GNK+DL S+
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ +E +A+A ++ L+FMETSAKTA NV E F+  AK++ +   +          G+ 
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIK 186

Query: 202 LQENNPASRSQCCSN 216
           +   + A+ +    N
Sbjct: 187 IGPQHAATNATHAGN 201


>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
          Length = 216

 Score =  155 bits (393), Expect = 2e-38
 Identities = 77/190 (40%), Positives = 118/190 (62%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK +++G++ VGKS L+L+F   +F    + TIG  F  + V +D   +K +IWDTAGQE
Sbjct: 7   FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 66

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
            + S+   YYRGA  A++VYDIT  +TF    +W+++ ++ +S N+VI L GNK+DL S+
Sbjct: 67  SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 126

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ +E +A+A ++ L+FMETSAKTA NV E F+  AK++ +   Q          G+ 
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIK 186

Query: 202 LQENNPASRS 211
           +      S S
Sbjct: 187 IGPQQSISTS 196


>gi|117938299 RAB6C-like [Homo sapiens]
          Length = 254

 Score =  150 bits (380), Expect = 6e-37
 Identities = 73/171 (42%), Positives = 107/171 (62%)

Query: 16  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
           GN + +FKLV LGE +V K+SL+ RF    F    ++ IG  FL++T+ L+D T+   +W
Sbjct: 8   GNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLW 67

Query: 76  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
           DTAGQER  SL P Y R + AA+VVYDITN ++F +   W+ +++ +   +++I L GNK
Sbjct: 68  DTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVIITLVGNK 127

Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
            DLA KR V  +E +  A   ++ F+ET AK   NV ++F  +A  LP  E
Sbjct: 128 TDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGME 178


>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
          Length = 203

 Score =  150 bits (379), Expect = 8e-37
 Identities = 72/192 (37%), Positives = 119/192 (61%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGK+ L++RF +  F+    STIG  F  +TV ++   +K ++WDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   I+VYDIT+  +F   +NW+K ++  AS  +   L GNK D+ +K
Sbjct: 69  RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ ++A   A ++ + F ETSAK++MNV+E F ++A+ +        +G   +    D
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 188

Query: 202 LQENNPASRSQC 213
           L+  +  + ++C
Sbjct: 189 LKTCDKKNTNKC 200


>gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens]
          Length = 254

 Score =  149 bits (375), Expect = 2e-36
 Identities = 72/171 (42%), Positives = 107/171 (62%)

Query: 16  GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
           GN + +FKLV LGE +V K+SL+ RF    F    ++ IG  FL++T+ L+D T+   +W
Sbjct: 8   GNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLW 67

Query: 76  DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
           DTAGQER  SL P Y R + AA+VVYDITN ++F +   W+ +++ +   +++I L GN+
Sbjct: 68  DTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNR 127

Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
            DLA KR V  +E +  A   ++ F+ET AK   NV ++F  +A  LP  E
Sbjct: 128 TDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGME 178


>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
           sapiens]
          Length = 216

 Score =  148 bits (373), Expect = 4e-36
 Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 9/213 (4%)

Query: 4   RGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQES-TIGAAFLTQT 62
           +GGA    GP   + +   K +L+G+S VGK+SL+++F +G+F     S T+G  F  + 
Sbjct: 10  QGGA----GPDFNDHVLH-KTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKV 64

Query: 63  VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
           V +D   VK +IWDTAGQER+ S+   YYR AQA +++YDITN  +F   + W+ E+   
Sbjct: 65  VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY 124

Query: 123 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
           A  ++VI L GNKAD++S+R +  ++ +  A +  + F+ETSAKT MNV   F+AIAK+L
Sbjct: 125 AQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 184

Query: 183 PKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
                  A     + R  D  E+    RS CCS
Sbjct: 185 KYRAGHQADEPSFQIR--DYVESQ-KKRSSCCS 214


>gi|19923483 GTPase Rab14 [Homo sapiens]
          Length = 215

 Score =  148 bits (373), Expect = 4e-36
 Identities = 73/186 (39%), Positives = 113/186 (60%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK +++G+  VGKS L+ +F + +F      TIG  F T+ + +    +K +IWDTAGQE
Sbjct: 12  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 71

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA  A++VYDIT   T+    +W+ + +   +PN VI L GNKADL ++
Sbjct: 72  RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 131

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V ++EA+ +A++N LLF+E SAKT  NV + F+  AKK+ +N    +        GV 
Sbjct: 132 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191

Query: 202 LQENNP 207
            + + P
Sbjct: 192 HKPSAP 197


>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
           family [Homo sapiens]
          Length = 327

 Score =  147 bits (372), Expect = 5e-36
 Identities = 71/192 (36%), Positives = 117/192 (60%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGK+ L++RF +  F+    STIG  F  +TV ++   +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   I+ YDIT+  +F   +NW+K +   AS  +   L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ ++A   A ++ + F ETSAK++MNV+E F ++A+ +        +G   +    D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312

Query: 202 LQENNPASRSQC 213
           L+  +  + ++C
Sbjct: 313 LKTCDIKNTNKC 324


>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  147 bits (372), Expect = 5e-36
 Identities = 71/192 (36%), Positives = 117/192 (60%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGK+ L++RF +  F+    STIG  F  +TV ++   +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   I+ YDIT+  +F   +NW+K +   AS  +   L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ ++A   A ++ + F ETSAK++MNV+E F ++A+ +        +G   +    D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312

Query: 202 LQENNPASRSQC 213
           L+  +  + ++C
Sbjct: 313 LKTCDIKNTNKC 324


>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
          Length = 327

 Score =  147 bits (372), Expect = 5e-36
 Identities = 71/192 (36%), Positives = 117/192 (60%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGK+ L++RF +  F+    STIG  F  +TV ++   +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   I+ YDIT+  +F   +NW+K +   AS  +   L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
           R V+ ++A   A ++ + F ETSAK++MNV+E F ++A+ +        +G   +    D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312

Query: 202 LQENNPASRSQC 213
           L+  +  + ++C
Sbjct: 313 LKTCDIKNTNKC 324


>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
          Length = 222

 Score =  147 bits (372), Expect = 5e-36
 Identities = 69/164 (42%), Positives = 111/164 (67%)

Query: 19  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
           +C+ KL+ LGE +VGK+S++ RF+   F    ++T+G  FL++T+ L+D  V+ ++WDTA
Sbjct: 29  LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTA 88

Query: 79  GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
           GQER+HSL P Y R +  A+VVYDITN ++F     WV+ ++ +   ++VI L GNK DL
Sbjct: 89  GQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDL 148

Query: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
            +KR V  ++ +  + + +++F+ETSAKT  NV ++F  +A  L
Sbjct: 149 DNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASAL 192


>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
          Length = 217

 Score =  146 bits (369), Expect = 1e-35
 Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 8/199 (4%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK++L+G+S VGK+ +V  F  G + E Q++TIG  F  +++ +D   VK ++WDTAGQE
Sbjct: 18  FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQE 77

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYR A AAI+ YD+T   TF    +W+ E+++  + N+VI L GNK DL  K
Sbjct: 78  RFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEK 137

Query: 142 RAVEFQEAQAYADDNSLL-FMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGV 200
           R V F++A   A+   LL  +ETSAK + N+ E+F+ +AK+L      +  G    N G+
Sbjct: 138 RHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESALN-GL 196

Query: 201 DLQEN------NPASRSQC 213
            L  +       P+ ++ C
Sbjct: 197 PLDSSPVLMAQGPSEKTHC 215


>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
          Length = 207

 Score =  146 bits (369), Expect = 1e-35
 Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 2/192 (1%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FKL+L+G+S VGK+ L+ RF +  F+    STIG  F  +T+ LD   +K +IWDTAGQE
Sbjct: 9   FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ ++   YYRGA   ++VYDITN  +F   KNW++ ++  AS ++   + GNK D+  K
Sbjct: 69  RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL--PKNEPQNATGAPGRNRG 199
           R V  +  +  A D  + F+ETSAK++ NV E F  +A+ +    N   N + + G    
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188

Query: 200 VDLQENNPASRS 211
           V + EN     S
Sbjct: 189 VKITENRSKKTS 200


>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
          Length = 213

 Score =  146 bits (369), Expect = 1e-35
 Identities = 71/161 (44%), Positives = 104/161 (64%)

Query: 22  FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
           FK +++G +  GKS L+ +F++ +F +    TIG  F ++ V +   TVK +IWDTAGQE
Sbjct: 9   FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 68

Query: 82  RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
           R+ S+   YYRGA  A++VYDIT+ +T+     W+ + +  ASPNIV+ L GNK DL  +
Sbjct: 69  RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 128

Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
           R V F EA  +A +N L+F+ETSA T  NV E F+  A+ +
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.129    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,273
Number of Sequences: 37866
Number of extensions: 272077
Number of successful extensions: 1076
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 240
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press