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Search of human proteins with 41393545
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
(216 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo sa... 432 e-121
gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo sa... 432 e-121
gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens] 372 e-103
gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens] 363 e-101
gi|10190714 RAS-related protein RAB-22A [Homo sapiens] 188 3e-48
gi|33589861 RAB31, member RAS oncogene family [Homo sapiens] 181 5e-46
gi|11967981 RAB17, member RAS oncogene family [Homo sapiens] 176 1e-44
gi|7661922 RAB21, member RAS oncogene family [Homo sapiens] 170 1e-42
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens] 169 2e-42
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa... 166 2e-41
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap... 165 2e-41
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa... 164 4e-41
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens] 164 4e-41
gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens] 160 6e-40
gi|4758984 Ras-related protein Rab-11A [Homo sapiens] 157 5e-39
gi|116812567 RAB25 [Homo sapiens] 157 8e-39
gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens] 156 1e-38
gi|21361884 RAB2B protein isoform 1 [Homo sapiens] 155 2e-38
gi|117938299 RAB6C-like [Homo sapiens] 150 6e-37
gi|4506363 RAB13, member RAS oncogene family [Homo sapiens] 150 8e-37
gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens] 149 2e-36
gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo sa... 148 4e-36
gi|19923483 GTPase Rab14 [Homo sapiens] 148 4e-36
gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene fa... 147 5e-36
gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens] 147 5e-36
gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens] 147 5e-36
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens] 147 5e-36
gi|239915976 RAB19, member RAS oncogene family [Homo sapiens] 146 1e-35
gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens] 146 1e-35
gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens] 146 1e-35
>gi|41393614 RAB5C, member RAS oncogene family isoform a [Homo
sapiens]
Length = 216
Score = 432 bits (1110), Expect = e-121
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
Sbjct: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
Query: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
Sbjct: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
Sbjct: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
Sbjct: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
>gi|41393545 RAB5C, member RAS oncogene family isoform b [Homo
sapiens]
Length = 216
Score = 432 bits (1110), Expect = e-121
Identities = 216/216 (100%), Positives = 216/216 (100%)
Query: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT
Sbjct: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
Query: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ
Sbjct: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK
Sbjct: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN
Sbjct: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
>gi|19923262 RAB5A, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 372 bits (956), Expect = e-103
Identities = 188/216 (87%), Positives = 198/216 (91%), Gaps = 1/216 (0%)
Query: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
MA RG A RPNGP GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHE+QESTIGAAFLT
Sbjct: 1 MASRG-ATRPNGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT 59
Query: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN ++FARAKNWVKELQ
Sbjct: 60 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQ 119
Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
RQASPNIVIAL+GNKADLA+KRAV+FQEAQ+YADDNSLLFMETSAKT+MNVNEIFMAIAK
Sbjct: 120 RQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAK 179
Query: 181 KLPKNEPQNATGAPGRNRGVDLQENNPASRSQCCSN 216
KLPKNEPQN R RGVDL E +R+QCCSN
Sbjct: 180 KLPKNEPQNPGANSARGRGVDLTEPTQPTRNQCCSN 215
>gi|4506371 RAB5B, member RAS oncogene family [Homo sapiens]
Length = 215
Score = 363 bits (933), Expect = e-101
Identities = 180/209 (86%), Positives = 195/209 (93%)
Query: 8 ARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDD 67
ARPNG +KICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQ+VCLDD
Sbjct: 7 ARPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD 66
Query: 68 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNI 127
TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN +TFARAK WVKELQRQASP+I
Sbjct: 67 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSI 126
Query: 128 VIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEP 187
VIALAGNKADLA+KR VE++EAQAYADDNSLLFMETSAKTAMNVN++F+AIAKKLPK+EP
Sbjct: 127 VIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
Query: 188 QNATGAPGRNRGVDLQENNPASRSQCCSN 216
QN GA GR+RGVDL E + ++SQCCSN
Sbjct: 187 QNLGGAAGRSRGVDLHEQSQQNKSQCCSN 215
>gi|10190714 RAS-related protein RAB-22A [Homo sapiens]
Length = 194
Score = 188 bits (478), Expect = 3e-48
Identities = 93/194 (47%), Positives = 130/194 (67%), Gaps = 4/194 (2%)
Query: 21 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ 80
+ K+ LLG++ VGKSS+V RFV+ F TIGA+F+T+TV + KF IWDTAGQ
Sbjct: 5 ELKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQ 64
Query: 81 ERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLAS 140
ER+ +LAPMYYRG+ AAI+VYDIT +TF+ KNWVKEL++ PNIV+A+AGNK DL
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 141 KRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGV 200
R V ++A+ YAD +F+ETSAK A+N+NE+F+ I++++P + P +G
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPSTD----ANLPSGGKGF 180
Query: 201 DLQENNPASRSQCC 214
L+ + CC
Sbjct: 181 KLRRQPSEPKRSCC 194
>gi|33589861 RAB31, member RAS oncogene family [Homo sapiens]
Length = 195
Score = 181 bits (458), Expect = 5e-46
Identities = 90/196 (45%), Positives = 129/196 (65%), Gaps = 4/196 (2%)
Query: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
I + K+ LLG++ VGKSS+V RFV+ F TIGA+F+T+TV + KF IWDTA
Sbjct: 4 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTA 63
Query: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
GQER+HSLAPMYYRG+ AA++VYDIT D+F K WVKEL+ NIV+A+AGNK DL
Sbjct: 64 GQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDL 123
Query: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNR 198
+ R V ++A+ YA+ + +ETSAK A+N+ E+F I++++P +P G N
Sbjct: 124 SDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDPHE----NGNNG 179
Query: 199 GVDLQENNPASRSQCC 214
+ +++ + +CC
Sbjct: 180 TIKVEKPTMQASRRCC 195
>gi|11967981 RAB17, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 176 bits (447), Expect = 1e-44
Identities = 93/208 (44%), Positives = 136/208 (65%), Gaps = 4/208 (1%)
Query: 10 PNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTT 69
P AA ++ FKLVLLG +VGKSSL LR+VK F T+G AF T+ V + T+
Sbjct: 8 PQPRAAPSQPRVFKLVLLGSGSVGKSSLALRYVKNDFKSILP-TVGCAFFTKVVDVGATS 66
Query: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASP-NIV 128
+K EIWDTAGQE+YHS+ +Y+RGA AA++VYDIT D+F +A+ W+K+L+ + P ++
Sbjct: 67 LKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVL 126
Query: 129 IALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQ 188
+ L GNK DL+ +R V FQE + +AD LLFMETSAK V+E+F +A++L + +
Sbjct: 127 VMLVGNKTDLSQEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQELLQRSDE 186
Query: 189 NATGAPGRNRGVDLQENNPASRSQCCSN 216
G + V L + PA +++CC++
Sbjct: 187 EGQALRG-DAAVALNK-GPARQAKCCAH 212
>gi|7661922 RAB21, member RAS oncogene family [Homo sapiens]
Length = 225
Score = 170 bits (430), Expect = 1e-42
Identities = 90/226 (39%), Positives = 135/226 (59%), Gaps = 12/226 (5%)
Query: 1 MAGRGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLT 60
MA GG G AA + FK+VLLGE VGK+SLVLR+ + +F++ +T+ A+FLT
Sbjct: 1 MAAAGGGG--GGAAAAGRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLT 58
Query: 61 QTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQ 120
+ + + V IWDTAGQER+H+L P+YYR + AI+VYDIT+ D+F + KNWVKEL+
Sbjct: 59 KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 118
Query: 121 RQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAK 180
+ I + + GNK DL +R V QEA++YA+ TSAK + E+F+ + K
Sbjct: 119 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 178
Query: 181 KL------PKNEPQNATGAPG-RNRGVDLQENNPASRSQ---CCSN 216
++ + N + PG RGV + ++ P +++ CCS+
Sbjct: 179 RMIETAQVDERAKGNGSSQPGTARRGVQIIDDEPQAQTSGGGCCSS 224
>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
Length = 208
Score = 169 bits (427), Expect = 2e-42
Identities = 83/199 (41%), Positives = 125/199 (62%), Gaps = 1/199 (0%)
Query: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D TV+ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
DTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNK 127
Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
DLA KR + +E + A + S++F+ETSAKT NV ++F +A LP E G
Sbjct: 128 TDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALPGMENVQEKSKEG 187
Query: 196 R-NRGVDLQENNPASRSQC 213
+ +D + PAS C
Sbjct: 188 MIDIKLDKPQEPPASEGGC 206
>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
sapiens]
Length = 208
Score = 166 bits (419), Expect = 2e-41
Identities = 82/202 (40%), Positives = 127/202 (62%), Gaps = 7/202 (3%)
Query: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D T++ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLW 67
Query: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
DTAGQER+ SL P Y R + AA+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
DLA KR V +E + A + +++F+ETSAK NV ++F +A LP E +T
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184
Query: 196 RNRGVDLQ----ENNPASRSQC 213
R +D++ + P S C
Sbjct: 185 REDMIDIKLEKPQEQPVSEGGC 206
>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
sapiens]
Length = 205
Score = 165 bits (418), Expect = 2e-41
Identities = 85/195 (43%), Positives = 120/195 (61%), Gaps = 3/195 (1%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGKS L+LRF + E STIG F +T+ LD T+K +IWDTAGQE
Sbjct: 12 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 71
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA IVVYD+T+ ++F K W++E+ R AS N+ L GNK DL +K
Sbjct: 72 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 131
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
+ V++ A+ +AD + F+ETSAK A NV + FM +A ++ K AT V
Sbjct: 132 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGATAGGAEKSNVK 191
Query: 202 LQENNPASRS--QCC 214
+Q + P +S CC
Sbjct: 192 IQ-STPVKQSGGGCC 205
>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
sapiens]
Length = 208
Score = 164 bits (416), Expect = 4e-41
Identities = 82/202 (40%), Positives = 126/202 (62%), Gaps = 7/202 (3%)
Query: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
GN + +FKLV LGE +VGK+SL+ RF+ F ++TIG FL++T+ L+D TV+ ++W
Sbjct: 8 GNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLW 67
Query: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
DTAGQER+ SL P Y R + A+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 68 DTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNK 127
Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPG 195
DLA KR V +E + A + +++F+ETSAK NV ++F +A LP E +T
Sbjct: 128 TDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME---STQDRS 184
Query: 196 RNRGVDLQ----ENNPASRSQC 213
R +D++ + P S C
Sbjct: 185 REDMIDIKLEKPQEQPVSEGGC 206
>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
Length = 201
Score = 164 bits (416), Expect = 4e-41
Identities = 85/193 (44%), Positives = 120/193 (62%), Gaps = 1/193 (0%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGKS L+LRF + E STIG F +T+ LD T+K +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE 68
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA IVVYD+T+ +++A K W++E+ R AS N+ L GNK+DL +K
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 128
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKN-EPQNATGAPGRNRGV 200
+ V+ A+ +AD + F+ETSAK A NV + FM +A ++ K P A+G N +
Sbjct: 129 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGERPNLKI 188
Query: 201 DLQENNPASRSQC 213
D PA C
Sbjct: 189 DSTPVKPAGGGCC 201
>gi|190358517 RAB11B, member RAS oncogene family [Homo sapiens]
Length = 218
Score = 160 bits (406), Expect = 6e-40
Identities = 88/207 (42%), Positives = 126/207 (60%), Gaps = 13/207 (6%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATG-------AP 194
RAV EA+A+A+ N+L F+ETSA + NV E F I ++ + Q +P
Sbjct: 132 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESP 191
Query: 195 GRNRGVDLQ-----ENNPASRSQCCSN 216
G N VD+ + ++ QCC N
Sbjct: 192 G-NNVVDISVPPTTDGQKPNKLQCCQN 217
>gi|4758984 Ras-related protein Rab-11A [Homo sapiens]
Length = 216
Score = 157 bits (398), Expect = 5e-39
Identities = 88/207 (42%), Positives = 125/207 (60%), Gaps = 15/207 (7%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK+VL+G+S VGKS+L+ RF + +F+ +STIG F T+++ +D T+K +IWDTAGQE
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQE 71
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
RY ++ YYRGA A++VYDI T+ + W+KEL+ A NIVI L GNK+DL
Sbjct: 72 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 131
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
RAV EA+A+A+ N L F+ETSA + NV EI+ +++K + +N +
Sbjct: 132 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDM-S 190
Query: 194 PGRN----RGVDLQENNPASRSQCCSN 216
P N EN P + QCC N
Sbjct: 191 PSNNVVPIHVPPTTENKP--KVQCCQN 215
>gi|116812567 RAB25 [Homo sapiens]
Length = 213
Score = 157 bits (396), Expect = 8e-39
Identities = 84/201 (41%), Positives = 118/201 (58%), Gaps = 11/201 (5%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK+VL+GES VGK++L+ RF + +F +TIG F T+TV L VK +IWDTAG E
Sbjct: 13 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLE 72
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
RY ++ YYRGA A++V+D+T T+A + W+KEL A IV+ L GNK+DL+
Sbjct: 73 RYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 132
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNATGA 193
R V +EA+ +A++N LLF+ETSA + NV EIF ++K+ + NA
Sbjct: 133 REVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQRQNSIRTNAITL 192
Query: 194 PGRNRGVDLQENNPASRSQCC 214
G QE P + CC
Sbjct: 193 GSAQAG---QEPGPGEKRACC 210
>gi|4506365 RAB2A, member RAS oncogene family [Homo sapiens]
Length = 212
Score = 156 bits (394), Expect = 1e-38
Identities = 75/195 (38%), Positives = 120/195 (61%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK +++G++ VGKS L+L+F +F + TIG F + + +D +K +IWDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQE 66
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
+ S+ YYRGA A++VYDIT DTF W+++ ++ ++ N+VI L GNK+DL S+
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 126
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ +E +A+A ++ L+FMETSAKTA NV E F+ AK++ + + G+
Sbjct: 127 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYEKIQEGVFDINNEANGIK 186
Query: 202 LQENNPASRSQCCSN 216
+ + A+ + N
Sbjct: 187 IGPQHAATNATHAGN 201
>gi|21361884 RAB2B protein isoform 1 [Homo sapiens]
Length = 216
Score = 155 bits (393), Expect = 2e-38
Identities = 77/190 (40%), Positives = 118/190 (62%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK +++G++ VGKS L+L+F +F + TIG F + V +D +K +IWDTAGQE
Sbjct: 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE 66
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
+ S+ YYRGA A++VYDIT +TF +W+++ ++ +S N+VI L GNK+DL S+
Sbjct: 67 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 126
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ +E +A+A ++ L+FMETSAKTA NV E F+ AK++ + Q G+
Sbjct: 127 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIK 186
Query: 202 LQENNPASRS 211
+ S S
Sbjct: 187 IGPQQSISTS 196
>gi|117938299 RAB6C-like [Homo sapiens]
Length = 254
Score = 150 bits (380), Expect = 6e-37
Identities = 73/171 (42%), Positives = 107/171 (62%)
Query: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
GN + +FKLV LGE +V K+SL+ RF F ++ IG FL++T+ L+D T+ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLW 67
Query: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
DTAGQER SL P Y R + AA+VVYDITN ++F + W+ +++ + +++I L GNK
Sbjct: 68 DTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTEGGSDVIITLVGNK 127
Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
DLA KR V +E + A ++ F+ET AK NV ++F +A LP E
Sbjct: 128 TDLADKRQVSIEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGME 178
>gi|4506363 RAB13, member RAS oncogene family [Homo sapiens]
Length = 203
Score = 150 bits (379), Expect = 8e-37
Identities = 72/192 (37%), Positives = 119/192 (61%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGK+ L++RF + F+ STIG F +TV ++ +K ++WDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 68
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA I+VYDIT+ +F +NW+K ++ AS + L GNK D+ +K
Sbjct: 69 RFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAK 128
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ ++A A ++ + F ETSAK++MNV+E F ++A+ + +G + D
Sbjct: 129 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 188
Query: 202 LQENNPASRSQC 213
L+ + + ++C
Sbjct: 189 LKTCDKKNTNKC 200
>gi|116875763 RAB6C, member RAS oncogene family [Homo sapiens]
Length = 254
Score = 149 bits (375), Expect = 2e-36
Identities = 72/171 (42%), Positives = 107/171 (62%)
Query: 16 GNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIW 75
GN + +FKLV LGE +V K+SL+ RF F ++ IG FL++T+ L+D T+ +W
Sbjct: 8 GNPLRKFKLVFLGEQSVAKTSLITRFRYDSFDNTYQAIIGIDFLSKTMYLEDGTIGLRLW 67
Query: 76 DTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNK 135
DTAGQER SL P Y R + AA+VVYDITN ++F + W+ +++ + +++I L GN+
Sbjct: 68 DTAGQERLRSLIPRYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIITLVGNR 127
Query: 136 ADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNE 186
DLA KR V +E + A ++ F+ET AK NV ++F +A LP E
Sbjct: 128 TDLADKRQVSVEEGERKAKGLNVTFIETRAKAGYNVKQLFRRVAAALPGME 178
>gi|28376635 RAB37, member RAS oncogene family isoform 3 [Homo
sapiens]
Length = 216
Score = 148 bits (373), Expect = 4e-36
Identities = 86/213 (40%), Positives = 127/213 (59%), Gaps = 9/213 (4%)
Query: 4 RGGAARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQES-TIGAAFLTQT 62
+GGA GP + + K +L+G+S VGK+SL+++F +G+F S T+G F +
Sbjct: 10 QGGA----GPDFNDHVLH-KTILVGDSGVGKTSLLVQFDQGKFIPGSFSATVGIGFTNKV 64
Query: 63 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQ 122
V +D VK +IWDTAGQER+ S+ YYR AQA +++YDITN +F + W+ E+
Sbjct: 65 VTVDGVRVKLQIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEY 124
Query: 123 ASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
A ++VI L GNKAD++S+R + ++ + A + + F+ETSAKT MNV F+AIAK+L
Sbjct: 125 AQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKEL 184
Query: 183 PKNEPQNATGAPGRNRGVDLQENNPASRSQCCS 215
A + R D E+ RS CCS
Sbjct: 185 KYRAGHQADEPSFQIR--DYVESQ-KKRSSCCS 214
>gi|19923483 GTPase Rab14 [Homo sapiens]
Length = 215
Score = 148 bits (373), Expect = 4e-36
Identities = 73/186 (39%), Positives = 113/186 (60%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK +++G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQE
Sbjct: 12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQE 71
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA A++VYDIT T+ +W+ + + +PN VI L GNKADL ++
Sbjct: 72 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 131
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V ++EA+ +A++N LLF+E SAKT NV + F+ AKK+ +N + GV
Sbjct: 132 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLDLNAAESGVQ 191
Query: 202 LQENNP 207
+ + P
Sbjct: 192 HKPSAP 197
>gi|169204777 PREDICTED: similar to RAB13, member RAS oncogene
family [Homo sapiens]
Length = 327
Score = 147 bits (372), Expect = 5e-36
Identities = 71/192 (36%), Positives = 117/192 (60%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGK+ L++RF + F+ STIG F +TV ++ +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA I+ YDIT+ +F +NW+K + AS + L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ ++A A ++ + F ETSAK++MNV+E F ++A+ + +G + D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312
Query: 202 LQENNPASRSQC 213
L+ + + ++C
Sbjct: 313 LKTCDIKNTNKC 324
>gi|169205558 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 147 bits (372), Expect = 5e-36
Identities = 71/192 (36%), Positives = 117/192 (60%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGK+ L++RF + F+ STIG F +TV ++ +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA I+ YDIT+ +F +NW+K + AS + L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ ++A A ++ + F ETSAK++MNV+E F ++A+ + +G + D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312
Query: 202 LQENNPASRSQC 213
L+ + + ++C
Sbjct: 313 LKTCDIKNTNKC 324
>gi|169204174 PREDICTED: similar to hCG24991 [Homo sapiens]
Length = 327
Score = 147 bits (372), Expect = 5e-36
Identities = 71/192 (36%), Positives = 117/192 (60%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGK+ L++RF + F+ STIG F +TV ++ +K ++WDTAGQE
Sbjct: 133 FKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQE 192
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA I+ YDIT+ +F +NW+K + AS + L GNK D+ +K
Sbjct: 193 RFKTITTAYYRGAMGIILAYDITDEKSFENIQNWMKSIMENASAGVEHLLLGNKCDMEAK 252
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGVD 201
R V+ ++A A ++ + F ETSAK++MNV+E F ++A+ + +G + D
Sbjct: 253 RKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDILLKSGGRRSGNGNKPPSTD 312
Query: 202 LQENNPASRSQC 213
L+ + + ++C
Sbjct: 313 LKTCDIKNTNKC 324
>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
Length = 222
Score = 147 bits (372), Expect = 5e-36
Identities = 69/164 (42%), Positives = 111/164 (67%)
Query: 19 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTA 78
+C+ KL+ LGE +VGK+S++ RF+ F ++T+G FL++T+ L+D V+ ++WDTA
Sbjct: 29 LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLSKTMYLEDQIVQLQLWDTA 88
Query: 79 GQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADL 138
GQER+HSL P Y R + A+VVYDITN ++F WV+ ++ + ++VI L GNK DL
Sbjct: 89 GQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKWVEHVRAERGDDVVIMLLGNKIDL 148
Query: 139 ASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
+KR V ++ + + + +++F+ETSAKT NV ++F +A L
Sbjct: 149 DNKRQVTAEQGEEKSRNLNVMFIETSAKTGYNVKKLFRRVASAL 192
>gi|239915976 RAB19, member RAS oncogene family [Homo sapiens]
Length = 217
Score = 146 bits (369), Expect = 1e-35
Identities = 76/199 (38%), Positives = 119/199 (59%), Gaps = 8/199 (4%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK++L+G+S VGK+ +V F G + E Q++TIG F +++ +D VK ++WDTAGQE
Sbjct: 18 FKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQE 77
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYR A AAI+ YD+T TF +W+ E+++ + N+VI L GNK DL K
Sbjct: 78 RFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEK 137
Query: 142 RAVEFQEAQAYADDNSLL-FMETSAKTAMNVNEIFMAIAKKLPKNEPQNATGAPGRNRGV 200
R V F++A A+ LL +ETSAK + N+ E+F+ +AK+L + G N G+
Sbjct: 138 RHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVFVLMAKELIARNSLHLYGESALN-GL 196
Query: 201 DLQEN------NPASRSQC 213
L + P+ ++ C
Sbjct: 197 PLDSSPVLMAQGPSEKTHC 215
>gi|7706563 RAB8B, member RAS oncogene family [Homo sapiens]
Length = 207
Score = 146 bits (369), Expect = 1e-35
Identities = 75/192 (39%), Positives = 112/192 (58%), Gaps = 2/192 (1%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FKL+L+G+S VGK+ L+ RF + F+ STIG F +T+ LD +K +IWDTAGQE
Sbjct: 9 FKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQE 68
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ ++ YYRGA ++VYDITN +F KNW++ ++ AS ++ + GNK D+ K
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDK 128
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL--PKNEPQNATGAPGRNRG 199
R V + + A D + F+ETSAK++ NV E F +A+ + N N + + G
Sbjct: 129 RQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGP 188
Query: 200 VDLQENNPASRS 211
V + EN S
Sbjct: 189 VKITENRSKKTS 200
>gi|82659107 ras-related GTP-binding protein 4b [Homo sapiens]
Length = 213
Score = 146 bits (369), Expect = 1e-35
Identities = 71/161 (44%), Positives = 104/161 (64%)
Query: 22 FKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 81
FK +++G + GKS L+ +F++ +F + TIG F ++ V + TVK +IWDTAGQE
Sbjct: 9 FKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQE 68
Query: 82 RYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASK 141
R+ S+ YYRGA A++VYDIT+ +T+ W+ + + ASPNIV+ L GNK DL +
Sbjct: 69 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 128
Query: 142 RAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 182
R V F EA +A +N L+F+ETSA T NV E F+ A+ +
Sbjct: 129 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 169
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.129 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,527,273
Number of Sequences: 37866
Number of extensions: 272077
Number of successful extensions: 1076
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 689
Number of HSP's gapped (non-prelim): 240
length of query: 216
length of database: 18,247,518
effective HSP length: 98
effective length of query: 118
effective length of database: 14,536,650
effective search space: 1715324700
effective search space used: 1715324700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.