Search of human proteins with 41327705

Search of human proteins with 41327705

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41327705 apoptosis-inducing, TAF9-like domain 1 isoform B
[Homo sapiens]
         (99 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41327705 apoptosis-inducing, TAF9-like domain 1 isoform B [Ho...   192   6e-50
gi|41327703 apoptosis-inducing, TAF9-like domain 1 isoform A [Ho...   192   6e-50
gi|38348374 apoptosis-inducing, TAF9-like domain 1 isoform C [Ho...   105   8e-24
gi|126722969 centromere protein T [Homo sapiens]                       37   0.004
gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]    33   0.064
gi|62865614 TAF9 RNA polymerase II, TATA box binding protein-ass...    32   0.083
gi|4507351 TAF9 RNA polymerase II, TATA box binding protein-asso...    32   0.083
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso...    32   0.14 
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso...    32   0.14 
gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]             31   0.19 
gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]            30   0.41 
gi|20070280 transcription associated factor 9B [Homo sapiens]          30   0.41 
gi|12083581 phosphoinositide-specific phospholipase C beta 1 iso...    30   0.54 
gi|33356544 phosphoinositide-specific phospholipase C beta 1 iso...    30   0.54 
gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo ...    29   0.70 
gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo s...    29   0.70 
gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo sa...    29   0.70 
gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]       29   0.70 
gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]                      29   0.92 
gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]                      29   0.92 
gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]                       29   0.92 
gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]     29   0.92 
gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]     29   0.92 
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]     28   1.2  
gi|55741447 pleckstrin homology domain containing, family H (wit...    28   1.2  
gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo sapiens]     28   1.6  
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo...    28   1.6  
gi|19923477 NEDD8 ultimate buster-1 [Homo sapiens]                     28   1.6  
gi|6912574 pallidin [Homo sapiens]                                     28   1.6  
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    28   2.0  

>gi|41327705 apoptosis-inducing, TAF9-like domain 1 isoform B
          [Homo sapiens]
          Length = 99

 Score =  192 bits (487), Expect = 6e-50
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1  MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 60
          MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK
Sbjct: 1  MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 60

Query: 61 SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 99
          SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN
Sbjct: 61 SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 99


>gi|41327703 apoptosis-inducing, TAF9-like domain 1 isoform A [Homo
           sapiens]
          Length = 138

 Score =  192 bits (487), Expect = 6e-50
 Identities = 99/99 (100%), Positives = 99/99 (100%)

Query: 1   MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 60
           MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK
Sbjct: 40  MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDK 99

Query: 61  SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 99
           SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN
Sbjct: 100 SEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 138


>gi|38348374 apoptosis-inducing, TAF9-like domain 1 isoform C
          [Homo sapiens]
          Length = 164

 Score =  105 bits (262), Expect = 8e-24
 Identities = 53/53 (100%), Positives = 53/53 (100%)

Query: 1  MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 53
          MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL
Sbjct: 40 MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 92


>gi|126722969 centromere protein T [Homo sapiens]
          Length = 561

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 16/49 (32%), Positives = 28/49 (57%)

Query: 1   MQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARR 49
           M   ++ +  + +   +  ++   DLE+FA HA R T+  ED++LL RR
Sbjct: 473 MPMERKALEMVEKCLDKYFQHLCDDLEVFAAHAGRKTVKPEDLELLMRR 521


>gi|31563507 GRIP and coiled-coil domain-containing 2 [Homo sapiens]
          Length = 1684

 Score = 32.7 bits (73), Expect = 0.064
 Identities = 16/62 (25%), Positives = 35/62 (56%)

Query: 17   RQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKK 76
            +Q +   ++LE+  + A++TT+   ++    R    L + +T+K+ +I  +  E K QK+
Sbjct: 1136 KQLQKTMQELELVKKDAQQTTLMNMEIADYERLMKELNQKLTNKNNKIEDLEQEIKIQKQ 1195

Query: 77   KK 78
            K+
Sbjct: 1196 KQ 1197


>gi|62865614 TAF9 RNA polymerase II, TATA box binding
          protein-associated factor isoform a [Homo sapiens]
          Length = 264

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 2  QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 45
          ++  + I  + E  FR       D ++++ HAK+ T++ +DV+L
Sbjct: 30 EYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRL 73


>gi|4507351 TAF9 RNA polymerase II, TATA box binding
          protein-associated factor isoform a [Homo sapiens]
          Length = 264

 Score = 32.3 bits (72), Expect = 0.083
 Identities = 12/44 (27%), Positives = 25/44 (56%)

Query: 2  QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 45
          ++  + I  + E  FR       D ++++ HAK+ T++ +DV+L
Sbjct: 30 EYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKATVDADDVRL 73


>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3p [Homo sapiens]
          Length = 476

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 22  FAKDLEMFARHAKRTTINTEDV---------KLLARRSNSLLKYITDKSEEIAQINLERK 72
           + K LE +    ++T+ N E +         +L+ARR+  LL+YI ++  E  +I  E++
Sbjct: 177 YKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKR 236

Query: 73  AQKKKK 78
            +++++
Sbjct: 237 EERRRR 242


>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3pdelta [Homo sapiens]
          Length = 443

 Score = 31.6 bits (70), Expect = 0.14
 Identities = 17/66 (25%), Positives = 37/66 (56%), Gaps = 9/66 (13%)

Query: 22  FAKDLEMFARHAKRTTINTEDV---------KLLARRSNSLLKYITDKSEEIAQINLERK 72
           + K LE +    ++T+ N E +         +L+ARR+  LL+YI ++  E  +I  E++
Sbjct: 144 YKKFLETYCVEEEKTSANPETLLGEMEAKTRELIARRTTPLLEYIKNRKLEKQRIREEKR 203

Query: 73  AQKKKK 78
            +++++
Sbjct: 204 EERRRR 209


>gi|24308169 dynein, axonemal, heavy chain 3 [Homo sapiens]
          Length = 4116

 Score = 31.2 bits (69), Expect = 0.19
 Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 2   QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKS 61
           Q     I   SE   R  E + ++LE F    KR  + TE++K    + N L K +    
Sbjct: 781 QAEMDLIKRCSEFELR-LEGYHRELESFR---KREVMTTEEMKHNVEKLNELSKNLNRAF 836

Query: 62  EEIAQINLERKAQKKKKS 79
            E   IN E +  +K+KS
Sbjct: 837 AEFELINKEEELLEKEKS 854


>gi|151301127 dynein, axonemal, heavy chain 7 [Homo sapiens]
          Length = 4024

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 25/105 (23%), Positives = 49/105 (46%), Gaps = 10/105 (9%)

Query: 5   KQTIAAISELTFRQCENFAKDLEMFARHAKR--TTINTEDVKLLARRSNSLLKYITDKSE 62
           K+ I    E    +CE F ++LE +A+ ++   +  + +DV+   +++  L   +   ++
Sbjct: 675 KEKIEQYQEGLKLRCERFVEELESYAKQSEEFYSFGDLQDVQRYLKKAQILNGKLDLAAD 734

Query: 63  EIAQINLERKA--------QKKKKSEDGSKNSRQPAEAGVVESEN 99
           +I Q N E +A         ++KK +DG     +  E  V  S N
Sbjct: 735 KIEQFNAEEEAFGWLPSVYPQRKKIQDGLNPYLRLYETAVEFSSN 779


>gi|20070280 transcription associated factor 9B [Homo sapiens]
          Length = 251

 Score = 30.0 bits (66), Expect = 0.41
 Identities = 11/44 (25%), Positives = 24/44 (54%)

Query: 2  QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKL 45
          ++  + I  + E  FR       D ++++ HAK+  ++ +DV+L
Sbjct: 30 EYEPRVINQMLEFAFRYVTTILDDAKIYSSHAKKPNVDADDVRL 73


>gi|12083581 phosphoinositide-specific phospholipase C beta 1
           isoform a [Homo sapiens]
          Length = 1216

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 60  KSEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 99
           +++++A + LE + + KK+++ G   S  P+EA    +EN
Sbjct: 823 RAKQLAALTLEDEEEVKKEADPGETPSEAPSEARTTPAEN 862



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 24  KDLEMFARHAKRTTINTED-VKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSEDG 82
           K  + F +  K+     +D VK   +++  L+K  T K  EI    L R+A  +K ++  
Sbjct: 914 KQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIQNDYLRRRAALEKSAKKD 973

Query: 83  SKNSRQPA 90
           SK   +P+
Sbjct: 974 SKKKSEPS 981


>gi|33356544 phosphoinositide-specific phospholipase C beta 1
           isoform b [Homo sapiens]
          Length = 1173

 Score = 29.6 bits (65), Expect = 0.54
 Identities = 12/40 (30%), Positives = 25/40 (62%)

Query: 60  KSEEIAQINLERKAQKKKKSEDGSKNSRQPAEAGVVESEN 99
           +++++A + LE + + KK+++ G   S  P+EA    +EN
Sbjct: 823 RAKQLAALTLEDEEEVKKEADPGETPSEAPSEARTTPAEN 862



 Score = 27.7 bits (60), Expect = 2.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)

Query: 24  KDLEMFARHAKRTTINTED-VKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSEDG 82
           K  + F +  K+     +D VK   +++  L+K  T K  EI    L R+A  +K ++  
Sbjct: 914 KQQKSFVKLQKKHYKEMKDLVKRHHKKTTDLIKEHTTKYNEIQNDYLRRRAALEKSAKKD 973

Query: 83  SKNSRQPA 90
           SK   +P+
Sbjct: 974 SKKKSEPS 981


>gi|115334679 retinoblastoma-binding protein 1 isoform III [Homo
            sapiens]
          Length = 1188

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 39   NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKK---SEDGSKNSRQPAEAGVV 95
            +TE +  L  +   + KY      E+A I+  RK  KKK    S  G+  S   ++ G+ 
Sbjct: 1113 STERISFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMS 1172

Query: 96   ESEN 99
             S +
Sbjct: 1173 PSSS 1176


>gi|115334673 retinoblastoma-binding protein 1 isoform II [Homo
            sapiens]
          Length = 1203

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 39   NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKK---SEDGSKNSRQPAEAGVV 95
            +TE +  L  +   + KY      E+A I+  RK  KKK    S  G+  S   ++ G+ 
Sbjct: 1128 STERISFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMS 1187

Query: 96   ESEN 99
             S +
Sbjct: 1188 PSSS 1191


>gi|115334677 retinoblastoma-binding protein 1 isoform I [Homo
            sapiens]
          Length = 1257

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 39   NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKK---SEDGSKNSRQPAEAGVV 95
            +TE +  L  +   + KY      E+A I+  RK  KKK    S  G+  S   ++ G+ 
Sbjct: 1182 STERISFLQEKLQEIRKYYMSLKSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMS 1241

Query: 96   ESEN 99
             S +
Sbjct: 1242 PSSS 1245


>gi|8923106 zinc finger, CCHC domain containing 10 [Homo sapiens]
          Length = 170

 Score = 29.3 bits (64), Expect = 0.70
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 31  RHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKK-KSEDGSKNSRQP 89
           ++  R +   E  K L  + N LL       + I + N+ERKA+KK+ KS   S +S   
Sbjct: 41  KYLHRPSRTAELKKALKEKENRLLL-----QQSIGETNVERKAKKKRSKSVTSSSSSSSD 95

Query: 90  AEAGVVESEN 99
           + A    SE+
Sbjct: 96  SSASDSSSES 105


>gi|201023341 FIP1 like 1 isoform 3 [Homo sapiens]
          Length = 520

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 13  ELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERK 72
           E   R  E      E   RH +R     E+ +  + RSNS  ++ +++ +     +   K
Sbjct: 435 EYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDS----HRRHK 490

Query: 73  AQKKKKSEDGSKNSRQPA 90
            +K K+S++G +   +PA
Sbjct: 491 HKKSKRSKEGKEAGSEPA 508


>gi|201023339 FIP1 like 1 isoform 2 [Homo sapiens]
          Length = 588

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 13  ELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERK 72
           E   R  E      E   RH +R     E+ +  + RSNS  ++ +++ +     +   K
Sbjct: 503 EYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDS----HRRHK 558

Query: 73  AQKKKKSEDGSKNSRQPA 90
            +K K+S++G +   +PA
Sbjct: 559 HKKSKRSKEGKEAGSEPA 576


>gi|40254978 FIP1 like 1 isoform 1 [Homo sapiens]
          Length = 594

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 4/78 (5%)

Query: 13  ELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERK 72
           E   R  E      E   RH +R     E+ +  + RSNS  ++ +++ +     +   K
Sbjct: 509 EYAERGYERHRASREKEERHRERRHREKEETRHKSSRSNSRRRHESEEGDS----HRRHK 564

Query: 73  AQKKKKSEDGSKNSRQPA 90
            +K K+S++G +   +PA
Sbjct: 565 HKKSKRSKEGKEAGSEPA 582


>gi|22035679 AT rich interactive domain 4B isoform 2 [Homo sapiens]
          Length = 1226

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 39   NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSEDG--SKNSRQPAEAGV 94
            + E + +L  +   + K+      E+A I+  RK  KKK+ E    S +S  P+ + +
Sbjct: 1143 SAERITILQEKLQEIRKHYLSLKSEVASIDRRRKRLKKKERESAATSSSSSSPSSSSI 1200


>gi|22035677 AT rich interactive domain 4B isoform 1 [Homo sapiens]
          Length = 1312

 Score = 28.9 bits (63), Expect = 0.92
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 39   NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSEDG--SKNSRQPAEAGV 94
            + E + +L  +   + K+      E+A I+  RK  KKK+ E    S +S  P+ + +
Sbjct: 1229 SAERITILQEKLQEIRKHYLSLKSEVASIDRRRKRLKKKERESAATSSSSSSPSSSSI 1286


>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
          Length = 484

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/34 (38%), Positives = 21/34 (61%)

Query: 59  DKSEEIAQINLERKAQKKKKSEDGSKNSRQPAEA 92
           DK +E ++   ER   KKKKS+D  K+  + +E+
Sbjct: 381 DKDKERSRDERERSTSKKKKSKDKEKDRERKSES 414


>gi|55741447 pleckstrin homology domain containing, family H (with
           MyTH4 domain) member 1 [Homo sapiens]
          Length = 1364

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 17  RQCENFAKDLEMFARHAKRTTI-NTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQK 75
           ++ EN    + +     K + + N +    L R+   LLK I  K E I+Q+  + + QK
Sbjct: 55  QRAENAETQVGVMEEKVKLSNLKNVDSEGSLHRKYQELLKAIKGKDELISQLEAQLEKQK 114

Query: 76  KKKSEDGSKNSRQPAE 91
           + ++E+      + A+
Sbjct: 115 QMRAEEAKTVQEKAAK 130


>gi|160707950 methyl CpG binding protein 2 isoform 2 [Homo
          sapiens]
          Length = 498

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 41 EDVKLLARRSNSLLKYITDKSEEIAQINLERKAQKKKKSED---GSKNSRQPAEAGVVES 97
          E+ +L  +  +  L+ + DK  +  ++  ++K +K+ K E     + +S +PAEAG  E+
Sbjct: 17 EEERLEEKSEDQDLQGLKDKPLKFKKVKKDKKEEKEGKHEPVQPSAHHSAEPAEAGKAET 76


>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
            sapiens]
          Length = 1938

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 12   SELTFRQCENFAKDLEMFA-RHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLE 70
            +EL   Q E+ +   E+F  R+A    +  + ++ L R + +L + I+D +E+IA+    
Sbjct: 1469 AELEAAQKESRSLSTELFKMRNAYEEVV--DQLETLRRENKNLQEEISDLTEQIAETGKN 1526

Query: 71   -RKAQKKKKSEDGSKNSRQPA 90
             ++A+K KK  +  K+  Q A
Sbjct: 1527 LQEAEKTKKLVEQEKSDLQVA 1547


>gi|19923477 NEDD8 ultimate buster-1 [Homo sapiens]
          Length = 601

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 11/26 (42%), Positives = 20/26 (76%)

Query: 56  YITDKSEEIAQINLERKAQKKKKSED 81
           +IT++ EE+AQI  E K +K+++ E+
Sbjct: 410 HITNRREELAQIRKEEKEKKRRRLEN 435


>gi|6912574 pallidin [Homo sapiens]
          Length = 172

 Score = 28.1 bits (61), Expect = 1.6
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 16  FRQCENFAKDLEMFAR----HAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLER 71
           F++C +      +FA     HAK   I  E + +L  +++ L K      ++  +  LER
Sbjct: 92  FKECHSMLDINALFAEAKHYHAKLVNIRKE-MLMLHEKTSKLKKRALKLQQKRQKEELER 150

Query: 72  KAQKKKKSEDGSKNSRQPAE 91
           + Q++K+ E   + + +PA+
Sbjct: 151 EQQREKEFEREKQLTARPAK 170


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
           sapiens]
          Length = 1818

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 19  CENFAKDLEMFA---RHAKRTTINTEDVKLLARRSNSLLKYITDKSEEIAQINLERKAQK 75
           CE+++ D +  A     A+   I+ +      ++  ++     +KS++      E+ + K
Sbjct: 236 CEHYSPDCDSSAPKAAQAQEPQIDEKKKSNFKKKMRTVATKSKEKSKKFTPPKSEKFSSK 295

Query: 76  KKKSEDGSKNSRQPAEAGVVE 96
           KKKS   S  ++   +A +V+
Sbjct: 296 KKKSYQASAKAKLGVKANIVD 316


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.309    0.122    0.311 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,906,934
Number of Sequences: 37866
Number of extensions: 96184
Number of successful extensions: 697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 93
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.