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Search of human proteins with 41152110
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41152110 adrenomedullin 2 precursor [Homo sapiens]
(148 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41152110 adrenomedullin 2 precursor [Homo sapiens] 310 3e-85
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 37 0.006
gi|117306167 proline-rich protein BstNI subfamily 3 precursor [H... 37 0.006
gi|239754138 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|169202233 PREDICTED: hypothetical protein [Homo sapiens] 36 0.013
gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo ... 36 0.013
gi|38683860 insulin receptor substrate 2 [Homo sapiens] 35 0.018
gi|4501945 adrenomedullin [Homo sapiens] 35 0.030
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|239750101 PREDICTED: hypothetical protein [Homo sapiens] 35 0.030
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 35 0.030
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ... 34 0.039
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ... 34 0.039
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 34 0.039
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 34 0.039
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 33 0.067
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 33 0.067
gi|40353727 synaptopodin isoform A [Homo sapiens] 33 0.067
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens] 33 0.087
gi|239756104 PREDICTED: tetratricopeptide repeat domain 6 [Homo ... 32 0.19
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.19
gi|239750633 PREDICTED: tetratricopeptide repeat domain 6 [Homo ... 32 0.19
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 32 0.19
gi|239748987 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239744942 PREDICTED: chromosome 14 open reading frame 25 [Hom... 32 0.19
>gi|41152110 adrenomedullin 2 precursor [Homo sapiens]
Length = 148
Score = 310 bits (794), Expect = 3e-85
Identities = 148/148 (100%), Positives = 148/148 (100%)
Query: 1 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW 60
MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW
Sbjct: 1 MARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVW 60
Query: 61 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL 120
KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL
Sbjct: 61 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNL 120
Query: 121 SHRLWQLMGPAGRQDSAPVDPSSPHSYG 148
SHRLWQLMGPAGRQDSAPVDPSSPHSYG
Sbjct: 121 SHRLWQLMGPAGRQDSAPVDPSSPHSYG 148
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 37.0 bits (84), Expect = 0.006
Identities = 37/116 (31%), Positives = 47/116 (40%), Gaps = 18/116 (15%)
Query: 29 GDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMGQPLRDGGRQ 88
G P +P PPA P P PR V H +L APV+ P++
Sbjct: 672 GAPEAPEPEPPPADD-----SPAEPEPRAVGRTNHLSLPR-----FAPVVTTPVKAEVSP 721
Query: 89 HSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNLSHRL----WQLMGPAGRQDSAPVD 140
H P +GP +TQAQLL+ L Q Q L L QL P Q P++
Sbjct: 722 HGAPALSNGP-QTQAQLLQ---PLQALQTQLLPQALPPPQPQLQPPPSPQQMPPLE 773
>gi|117306167 proline-rich protein BstNI subfamily 3 precursor [Homo
sapiens]
Length = 309
Score = 37.0 bits (84), Expect = 0.006
Identities = 28/83 (33%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 18 QLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPV 77
Q P ++S G PRP KP PP P Q + P PRP + + G P
Sbjct: 102 QPPQGGNQSQGPPPRPGKPEGPP---PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPR 158
Query: 78 MGQ---PLRDGGRQHSGPRRHSG 97
G+ P GG Q GP H G
Sbjct: 159 PGKPEGPPPQGGNQSQGPPPHPG 181
Score = 34.3 bits (77), Expect = 0.039
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 20 PGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMG 79
P ++S G PRP KP PP P Q + P PRP + + + G P G
Sbjct: 188 PQGGNQSQGPPPRPGKPEGPP---PQGGNQSQGPPPRPGKPEGPPSQGGNKPQGPPPHPG 244
Query: 80 QPLRDGGRQHSGPRRHSGPRRTQ 102
+P ++ + P+R P R Q
Sbjct: 245 KPQGPPPQEGNKPQRPPPPGRPQ 267
Score = 33.9 bits (76), Expect = 0.051
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 20 PGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMG 79
P ++S G PRP KP PP P Q + P PRP + + G P G
Sbjct: 62 PQGGNQSQGPPPRPGKPEGPP---PQGGNQSQGPPPRPGKPEGQPPQGGNQSQGPPPRPG 118
Query: 80 Q---PLRDGGRQHSGPRRHSG 97
+ P GG Q GP G
Sbjct: 119 KPEGPPPQGGNQSQGPPPRPG 139
Score = 32.7 bits (73), Expect = 0.11
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 20 PGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMG 79
P ++S G P P KP PP P Q + P PRP + + G P G
Sbjct: 167 PQGGNQSQGPPPHPGKPEGPP---PQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPG 223
Query: 80 Q---PLRDGGRQHSGPRRHSG 97
+ P GG + GP H G
Sbjct: 224 KPEGPPSQGGNKPQGPPPHPG 244
Score = 28.1 bits (61), Expect = 2.8
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 28 GGDPR--PVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMGQP---L 82
G P+ P P +P R P Q + P PRP + + G P G+P
Sbjct: 44 GNQPQRTPPPPGKPEGRPPQGGNQSQGPPPRPGKPEGPPPQGGNQSQGPPPRPGKPEGQP 103
Query: 83 RDGGRQHSGPRRHSG 97
GG Q GP G
Sbjct: 104 PQGGNQSQGPPPRPG 118
>gi|239754138 PREDICTED: hypothetical protein [Homo sapiens]
Length = 274
Score = 35.8 bits (81), Expect = 0.013
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 SLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAP--------RPVVWKLHR 64
S C LPG SRS R P +PP P S P P P R HR
Sbjct: 35 SRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAPHVLGARVAAGPTHR 94
Query: 65 -ALQAQRGAGLAPVMGQPLRDGGRQHSGPR-RHSGPRRTQAQLLR 107
+ R + PV +P R G + +G R R + P +A+ R
Sbjct: 95 LSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARAAR 139
>gi|169202233 PREDICTED: hypothetical protein [Homo sapiens]
Length = 381
Score = 35.8 bits (81), Expect = 0.013
Identities = 28/95 (29%), Positives = 36/95 (37%), Gaps = 17/95 (17%)
Query: 19 LPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVM 78
LP RS G +PRP +PR PP P++ P AP P R AG P
Sbjct: 296 LPQPAERSRG-EPRPAEPRAPPRPPPAARRPPPATAPSP------------RRAGSPPTR 342
Query: 79 GQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLG 113
+ R R P + + L+ GC G
Sbjct: 343 ----EEEPRPRRSAARPQCPVQCECLLMETGCFCG 373
>gi|239742631 PREDICTED: hypothetical protein XP_002342600 [Homo
sapiens]
Length = 274
Score = 35.8 bits (81), Expect = 0.013
Identities = 32/105 (30%), Positives = 41/105 (39%), Gaps = 10/105 (9%)
Query: 13 SLLCLQLPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAP--------RPVVWKLHR 64
S C LPG SRS R P +PP P S P P P R HR
Sbjct: 35 SRTCPPLPGPPSRSRSPSSRLKLPADPPRALPGSPEPPPPPPPAAPHVLGARVAAGPTHR 94
Query: 65 -ALQAQRGAGLAPVMGQPLRDGGRQHSGPR-RHSGPRRTQAQLLR 107
+ R + PV +P R G + +G R R + P +A+ R
Sbjct: 95 LSASHSRVSSRGPVGTKPKRPGQGRRAGARMRSAAPASPRARAAR 139
>gi|38683860 insulin receptor substrate 2 [Homo sapiens]
Length = 1338
Score = 35.4 bits (80), Expect = 0.018
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 9/73 (12%)
Query: 19 LPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHR-----ALQAQRGAG 73
L G LS P+ PR P+ SPSSSLQP P P P +L+R A+ +G G
Sbjct: 1002 LDGLLSPEASSPYPPLPPR--PSASPSSSLQP--PPPPPAPGELYRLPPASAVATAQGPG 1057
Query: 74 LAPVMGQPLRDGG 86
A + D G
Sbjct: 1058 AASSLSSDTGDNG 1070
>gi|4501945 adrenomedullin [Homo sapiens]
Length = 185
Score = 34.7 bits (78), Expect = 0.030
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 67 QAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQNLSHRLWQ 126
Q +GA +P P D R +R+ L GC GTC VQ L+H+++Q
Sbjct: 71 QDMKGASRSPEDSSP--DAARIRV--KRYRQSMNNFQGLRSFGCRFGTCTVQKLAHQIYQ 126
Query: 127 LMGPAGRQDSAPVDPSSPHSYG 148
+ + AP SP YG
Sbjct: 127 FT-DKDKDNVAPRSKISPQGYG 147
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 34.7 bits (78), Expect = 0.030
Identities = 31/91 (34%), Positives = 40/91 (43%), Gaps = 13/91 (14%)
Query: 31 PRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMG--QPLRD---G 85
PRP P P A+ PS +P +PRPV R +R +A + G P RD G
Sbjct: 177 PRPQPPSRPAAQPPS---RPAFRSPRPV-----RGPHPRRAVVVAVLFGVQAPRRDVAEG 228
Query: 86 GRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQ 116
G + G R P+R + LL V T Q
Sbjct: 229 GLRRDGRRPGLAPQRGRGGLLLVVLHAATVQ 259
>gi|239750101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 365
Score = 34.7 bits (78), Expect = 0.030
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 19 LPGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLA 75
LP RS G +PRP +PR PP P++ R P P P R L+ +R G A
Sbjct: 296 LPQPAERSRG-EPRPAEPRAPPRPPPAA----RRPPPPPAPGAPARPLRGRRSHGPA 347
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 34.7 bits (78), Expect = 0.030
Identities = 42/146 (28%), Positives = 58/146 (39%), Gaps = 11/146 (7%)
Query: 6 TAALGCISLLCLQLPGSLSRSLGGDPR-PVKPREP-PARSPSSSLQPRHPAPRPVVWKLH 63
++ L C+ L LQ+P + P P EP PAR P S+L P H +P P V +L
Sbjct: 791 SSPLACL-LQSLQIPPEQPEAPCLPPESPASALEPEPARPPLSALAPPHGSPDPPVPELL 849
Query: 64 RALQAQR-----GAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQVQ 118
+ + G GL + G+ GR+ G RR P R + G G +
Sbjct: 850 TGRGSGKRGRRGGGGLRGINGEARPARGRK-PGSRRE--PGRLALKWGTRGGFNGQMERS 906
Query: 119 NLSHRLWQLMGPAGRQDSAPVDPSSP 144
WQ G + P DP P
Sbjct: 907 PRRTHHWQHNGELAEGGAEPKDPPPP 932
>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
sapiens]
Length = 177
Score = 34.3 bits (77), Expect = 0.039
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 2 ARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARS-PSSSLQPRHPAPRPVVW 60
AR ALG S L L P SL + PRPV R P R P ++ P PRP
Sbjct: 49 ARPGRRALGLPSPLELAAP-SLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRP--- 104
Query: 61 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQL 105
AG AP +PL GR RR T A++
Sbjct: 105 --------GSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARV 141
>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
sapiens]
Length = 177
Score = 34.3 bits (77), Expect = 0.039
Identities = 35/105 (33%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 2 ARIPTAALGCISLLCLQLPGSLSRSLGGDPRPVKPREPPARS-PSSSLQPRHPAPRPVVW 60
AR ALG S L L P SL + PRPV R P R P ++ P PRP
Sbjct: 49 ARPGRRALGLPSPLELAAP-SLVPNASASPRPVSCRRAPPRPVPGAARWRGRPEPRP--- 104
Query: 61 KLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQL 105
AG AP +PL GR RR T A++
Sbjct: 105 --------GSPAGPAPTRARPLGAPGRSAPPARRRERELGTDARV 141
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 34.3 bits (77), Expect = 0.039
Identities = 33/102 (32%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 20 PGSLSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMG 79
PGS + G P +P PA P S +P +PRPV R +R +A + G
Sbjct: 135 PGSEALPPGSLPEAAQPPSRPAAQPPS--RPAFRSPRPV-----RGPHPRRAVVVAVLFG 187
Query: 80 --QPLRD---GGRQHSGPRRHSGPRRTQAQLLRVGCVLGTCQ 116
P RD GG + G R P+R + LL V T Q
Sbjct: 188 VQAPRRDVAEGGLRRDGRRPGLAPQRGRGGLLLVVLHAATVQ 229
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor
[Homo sapiens]
Length = 1336
Score = 34.3 bits (77), Expect = 0.039
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Query: 31 PRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQA---QRGAGLAPVMGQPLRDGGR 87
P P KP PP PS + PAP P + +R G P G L DG
Sbjct: 903 PPPAKPPPPPQPLPSPAYPAPRPAPGPAPFVPRERASVDRWRRTKGAGPPGGAGLADGFH 962
Query: 88 QHSGPRRHSG 97
++ GP G
Sbjct: 963 RYYGPIEPQG 972
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 33.5 bits (75), Expect = 0.067
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 29 GDPRPVKPREPPARSP------SSSLQPRHPAPR-PVVWKLHRALQAQRGAGLAPV 77
G P P P PPA SP S QP PAP P+ K R Q+ GL PV
Sbjct: 309 GRPSPAPPAVPPAASPVMPPQTQSPGQPAQPAPMVPLHQKQSRITPIQKPRGLDPV 364
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 33.5 bits (75), Expect = 0.067
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 6/71 (8%)
Query: 25 RSLGGD-PRPVKP-REPPARSPSSSLQPRHPAPRPVVWKLHRALQAQRGAGLAPVMGQPL 82
RS G + PRP P R PP P PR +P+P A GA AP+ PL
Sbjct: 773 RSAGAENPRPFSPPRAPPPPPPPPPPPPRMRSPQPA----RPGSAAVPGAAFAPIPRSPL 828
Query: 83 RDGGRQHSGPR 93
G + PR
Sbjct: 829 PAGPSSCTSPR 839
Score = 26.6 bits (57), Expect = 8.2
Identities = 11/22 (50%), Positives = 11/22 (50%)
Query: 36 PREPPARSPSSSLQPRHPAPRP 57
PR P PSS PR P P P
Sbjct: 824 PRSPLPAGPSSCTSPRSPLPAP 845
>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
Length = 347
Score = 33.1 bits (74), Expect = 0.087
Identities = 40/127 (31%), Positives = 49/127 (38%), Gaps = 30/127 (23%)
Query: 29 GDPRPVKPR---------EPPARSPSSSLQPRH--PAPRPVVWK--LHRALQAQRGAGLA 75
G P P P +PP RSP ++ H PAPR + W LH L + L
Sbjct: 225 GSPLPASPHPPLQPPAFPDPPIRSPDPAVSSAHSFPAPR-LAWSCVLHSPLSLPL-SKLP 282
Query: 76 P--VMGQPLRDGGRQHSGPRRH-------SGPRRTQAQLLRVGCVLGTCQVQNLSHRLWQ 126
P + PLR Q P H +TQ L R G C + RLW+
Sbjct: 283 PLYLTHSPLRHQSTQAQVPAPHLYSQTWEGDDMKTQTPLSRRS---GVC--RGADRRLWK 337
Query: 127 LMG-PAG 132
L G PAG
Sbjct: 338 LQGLPAG 344
>gi|239756104 PREDICTED: tetratricopeptide repeat domain 6 [Homo
sapiens]
Length = 1614
Score = 32.0 bits (71), Expect = 0.19
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 23 LSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQ----------AQRGA 72
L LGG PRP E A + S +PR R + H+AL+ R
Sbjct: 90 LQEVLGGAPRPSGLGEAAAPGKTRSFRPRDFYLRSSAFLRHQALKKPPVIASGFGTARPV 149
Query: 73 GLAPVMGQPLRDGGR------QHSGPRR--HSGPRRTQAQLLRVGCVLGTCQVQ 118
L P P++ R +H+ PRR H G R Q+Q V + G C +
Sbjct: 150 VLLPPPEPPVKRRARGVLESSRHAAPRRVFHLGREREQSQ--EVAPLAGPCMAK 201
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 32.0 bits (71), Expect = 0.19
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 20 PGSLSRSLGGDPRPVK-----PREPPARSPSSSLQPRHPAPRP 57
P L+R G PR K P PPA +P++ QP PAPRP
Sbjct: 98 PAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP--PAPRP 138
>gi|239750633 PREDICTED: tetratricopeptide repeat domain 6 [Homo
sapiens]
Length = 1614
Score = 32.0 bits (71), Expect = 0.19
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 23 LSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQ----------AQRGA 72
L LGG PRP E A + S +PR R + H+AL+ R
Sbjct: 90 LQEVLGGAPRPSGLGEAAAPGKTRSFRPRDFYLRSSAFLRHQALKKPPVIASGFGTARPV 149
Query: 73 GLAPVMGQPLRDGGR------QHSGPRR--HSGPRRTQAQLLRVGCVLGTCQVQ 118
L P P++ R +H+ PRR H G R Q+Q V + G C +
Sbjct: 150 VLLPPPEPPVKRRARGVLESSRHAAPRRVFHLGREREQSQ--EVAPLAGPCMAK 201
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 32.0 bits (71), Expect = 0.19
Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 20 PGSLSRSLGGDPRPVK-----PREPPARSPSSSLQPRHPAPRP 57
P L+R G PR K P PPA +P++ QP PAPRP
Sbjct: 98 PAPLARRPGKPPRRPKGAAGHPSAPPAAAPAAPAQP--PAPRP 138
>gi|239748987 PREDICTED: hypothetical protein [Homo sapiens]
Length = 123
Score = 32.0 bits (71), Expect = 0.19
Identities = 34/110 (30%), Positives = 43/110 (39%), Gaps = 27/110 (24%)
Query: 48 LQPRHPAPRPVVWKLHRALQAQRGAGLAPVMGQPLRDGGRQHSGPRRHSGPRRTQAQLLR 107
L P PA +P L R + Q G G+PL D G HSGP P R+ + R
Sbjct: 2 LGPPRPAEKPAA--LDRKRRGQGGDN-----GKPLPDPG--HSGPSAARAPSRSSPRARR 52
Query: 108 VGCVLGTC------------QVQNLSHRLWQLMGPAGRQDSAPVDPSSPH 145
+G VL + LS WQ + R+D SSPH
Sbjct: 53 MGGVLAGATLSEPHGSGRDGEASTLSR--WQ----SPREDEGGTPCSSPH 96
>gi|239744942 PREDICTED: chromosome 14 open reading frame 25 [Homo
sapiens]
Length = 1614
Score = 32.0 bits (71), Expect = 0.19
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 20/114 (17%)
Query: 23 LSRSLGGDPRPVKPREPPARSPSSSLQPRHPAPRPVVWKLHRALQ----------AQRGA 72
L LGG PRP E A + S +PR R + H+AL+ R
Sbjct: 90 LQEVLGGAPRPSGLGEAAAPGKTRSFRPRDFYLRSSAFLRHQALKKPPVIASGFGTARPV 149
Query: 73 GLAPVMGQPLRDGGR------QHSGPRR--HSGPRRTQAQLLRVGCVLGTCQVQ 118
L P P++ R +H+ PRR H G R Q+Q V + G C +
Sbjct: 150 VLLPPPEPPVKRRARGVLESSRHAAPRRVFHLGREREQSQ--EVAPLAGPCMAK 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.437
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,058,305
Number of Sequences: 37866
Number of extensions: 479878
Number of successful extensions: 3839
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 256
Number of HSP's that attempted gapping in prelim test: 3473
Number of HSP's gapped (non-prelim): 604
length of query: 148
length of database: 18,247,518
effective HSP length: 93
effective length of query: 55
effective length of database: 14,725,980
effective search space: 809928900
effective search space used: 809928900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.