Guide to the Human Genome
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Name: TMEM189-UBE2V1 Sequence: fasta or formatted (370aa) NCBI GI: 40806190
Description:

TMEM189-UBE2V1 readthrough transcript

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         21           2
 C cysteine            2.7         10           2
 D aspartate           4.1         15           2
 E glutamate           7.0         26           2
 F phenylalanine       4.1         15           1
 G glycine             7.0         26           1
 H histidine           4.3         16           2
 I isoleucine          6.2         23           2
 K lysine              3.8         14           1
 L leucine            11.1         41           4
 M methionine          2.2          8           2
 N asparagine          3.8         14           1
 P proline             6.2         23           2
 Q glutamine           3.2         12           2
 R arginine            5.4         20           2
 S serine              4.9         18           2
 T threonine           5.4         20           2
 V valine              6.8         25           2
 W tryptophan          3.5         13           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   TMEM189-UBE2V1 readthrough transcript 
TMEM189               0.627   transmembrane protein 189 isoform 1 
TMEM189               0.613   transmembrane protein 189 isoform 2 
UBE2V1                0.350   ubiquitin-conjugating enzyme E2 variant 1 isoform d ...
UBE2V1                0.350   ubiquitin-conjugating enzyme E2 variant 1 isoform a ...
UBE2V1                0.350   ubiquitin-conjugating enzyme E2 variant 1 isoform a ...
UBE2V2                0.325   ubiquitin-conjugating enzyme E2v2 
UBE2V1                0.216   ubiquitin-conjugating enzyme E2 variant 1 isoform c ...
UBE2K                 0.040   ubiquitin-conjugating enzyme E2K isoform 2 
UBE2K                 0.040   ubiquitin-conjugating enzyme E2K isoform 1 
UBE2G1                0.033   ubiquitin-conjugating enzyme E2G 1 
UBE2A                 0.029   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2B                 0.029   ubiquitin-conjugating enzyme E2B 
UBE2E2                0.029   ubiquitin-conjugating enzyme E2E 2 
UBE2E1                0.029   ubiquitin-conjugating enzyme E2E 1 isoform 2 
UBE2E1                0.029   ubiquitin-conjugating enzyme E2E 1 isoform 1 
UBE2D1                0.026   ubiquitin-conjugating enzyme E2D 1 
UBE2C                 0.026   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2C                 0.026   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2C                 0.026   ubiquitin-conjugating enzyme E2C isoform 4 
UBE2T                 0.026   ubiquitin-conjugating enzyme E2T 
UBE2E3                0.025   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.025   ubiquitin-conjugating enzyme E2E 3 
UBE2R2                0.022   ubiquitin-conjugating enzyme UBC3B 
UBE2D4                0.021   ubiquitin-conjugating enzyme E2D 4 (putative) 
CDC34                 0.020   ubiquitin-conjugating enzyme Cdc34 
UBE2L6                0.020   ubiquitin-conjugating enzyme E2L 6 isoform 1 
UBE2D2                0.020   ubiquitin-conjugating enzyme E2D 2 isoform 2 
UBE2D2                0.020   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2D3                0.020   ubiquitin-conjugating enzyme E2D 3 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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