Guide to the Human Genome
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Name: UBE2D4 Sequence: fasta or formatted (147aa) NCBI GI: 8393719
Description:

ubiquitin-conjugating enzyme E2D 4 (putative)

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         10           1
 C cysteine            2.7          4           1
 D aspartate           7.5         11           2
 E glutamate           2.7          4           1
 F phenylalanine       4.1          6           2
 G glycine             4.1          6           2
 H histidine           2.7          4           1
 I isoleucine          6.1          9           1
 K lysine              6.1          9           1
 L leucine             9.5         14           2
 M methionine          2.0          3           1
 N asparagine          4.1          6           1
 P proline            10.2         15           2
 Q glutamine           4.8          7           1
 R arginine            4.1          6           1
 S serine              6.1          9           1
 T threonine           6.1          9           2
 V valine              4.1          6           1
 W tryptophan          2.0          3           1
 Y tyrosine            4.1          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-conjugating enzyme E2D 4 (putative) 
UBE2D2                0.945   ubiquitin-conjugating enzyme E2D 2 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 2 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D3                0.938   ubiquitin-conjugating enzyme E2D 3 isoform 1 
UBE2D1                0.924   ubiquitin-conjugating enzyme E2D 1 
UBE2D3                0.907   ubiquitin-conjugating enzyme E2D 3 isoform 3 
UBE2D2                0.761   ubiquitin-conjugating enzyme E2D 2 isoform 2 
UBE2E3                0.606   ubiquitin-conjugating enzyme E2E 3 
UBE2E3                0.606   ubiquitin-conjugating enzyme E2E 3 
UBE2E2                0.606   ubiquitin-conjugating enzyme E2E 2 
UBE2E1                0.606   ubiquitin-conjugating enzyme E2E 1 isoform 1 
UBE2E1                0.516   ubiquitin-conjugating enzyme E2E 1 isoform 2 
UBE2N                 0.388   ubiquitin-conjugating enzyme E2N 
UBE2A                 0.374   ubiquitin-conjugating enzyme E2A isoform 1 
UBE2B                 0.363   ubiquitin-conjugating enzyme E2B 
UBE2T                 0.346   ubiquitin-conjugating enzyme E2T 
UBE2K                 0.336   ubiquitin-conjugating enzyme E2K isoform 1 
UBE2G2                0.329   ubiquitin-conjugating enzyme E2G 2 isoform 1 
UBE2L3                0.329   ubiquitin-conjugating enzyme E2L 3 isoform 1 
UBE2G1                0.311   ubiquitin-conjugating enzyme E2G 1 
UBE2NL                0.304   ubiquitin-conjugating enzyme E2N-like 
UBE2S                 0.291   ubiquitin-conjugating enzyme E2S 
UBE2C                 0.280   ubiquitin-conjugating enzyme E2C isoform 1 
UBE2K                 0.277   ubiquitin-conjugating enzyme E2K isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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