Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 40549413
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40549413 glial cell derived neurotrophic factor isoform 3
[Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40549413 glial cell derived neurotrophic factor isoform 3 [Ho... 281 8e-77
gi|40549411 glial cell derived neurotrophic factor isoform 2 pre... 241 1e-64
gi|4503975 glial cell derived neurotrophic factor isoform 1 prep... 241 1e-64
gi|4758826 neurturin preproprotein [Homo sapiens] 100 4e-22
gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens] 70 6e-13
gi|209954781 neurotrophic factor artemin isoform 1 precursor [Ho... 70 6e-13
gi|209954778 neurotrophic factor artemin isoform 3 precursor [Ho... 70 6e-13
gi|209954776 neurotrophic factor artemin isoform 1 precursor [Ho... 70 6e-13
gi|209977029 neurotrophic factor artemin isoform 3 precursor [Ho... 70 6e-13
gi|4758974 persephin precursor [Homo sapiens] 68 2e-12
gi|7705308 growth differentiation factor 2 [Homo sapiens] 32 0.11
gi|4503969 growth differentiation factor 5 preproprotein [Homo s... 31 0.25
gi|126507087 bone morphogenetic protein 3 preproprotein [Homo sa... 29 0.97
gi|56237021 fibrillin 3 precursor [Homo sapiens] 28 2.8
gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo s... 27 4.8
gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo sa... 27 4.8
gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens] 27 4.8
gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens] 27 4.8
gi|153791497 ciliary rootlet coiled-coil [Homo sapiens] 26 8.2
>gi|40549413 glial cell derived neurotrophic factor isoform 3 [Homo
sapiens]
Length = 133
Score = 281 bits (720), Expect = 8e-77
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MGCRGCLPGAAPHRVRLPAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 60
MGCRGCLPGAAPHRVRLPAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE
Sbjct: 1 MGCRGCLPGAAPHRVRLPAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKE 60
Query: 61 ELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYH 120
ELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYH
Sbjct: 61 ELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYH 120
Query: 121 ILRKHSAKRCGCI 133
ILRKHSAKRCGCI
Sbjct: 121 ILRKHSAKRCGCI 133
>gi|40549411 glial cell derived neurotrophic factor isoform 2
precursor [Homo sapiens]
Length = 185
Score = 241 bits (615), Expect = 1e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 19 AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 78
AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY
Sbjct: 71 AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 130
Query: 79 DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 133
DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
Sbjct: 131 DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 185
>gi|4503975 glial cell derived neurotrophic factor isoform 1
preproprotein [Homo sapiens]
Length = 211
Score = 241 bits (615), Expect = 1e-64
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 19 AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 78
AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY
Sbjct: 97 AANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTY 156
Query: 79 DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 133
DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI
Sbjct: 157 DKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 211
>gi|4758826 neurturin preproprotein [Homo sapiens]
Length = 197
Score = 100 bits (248), Expect = 4e-22
Identities = 48/115 (41%), Positives = 72/115 (62%), Gaps = 5/115 (4%)
Query: 20 ANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYD 79
A P R + R G R C L + + V++LGLGY + E ++FRYC+G+C+AA YD
Sbjct: 87 AGPRRRRARARLGARP----CGLRELEVRVSELGLGYASDETVLFRYCAGACEAAARVYD 142
Query: 80 KILKNLSRNRRLVSDKV-GQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGCI 133
L+ L + RRL ++V Q CCRP A++D++SFLD + YH + + SA+ C C+
Sbjct: 143 LGLRRLRQRRRLRRERVRAQPCCRPTAYEDEVSFLDAHSRYHTVHELSARECACV 197
>gi|16950645 neurotrophic factor artemin isoform 2 [Homo sapiens]
Length = 237
Score = 69.7 bits (169), Expect = 6e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 106 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 165
Query: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 166 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 224
Query: 122 LRKHSAKRCGCI 133
+ + SA CGC+
Sbjct: 225 VDRLSATACGCL 236
>gi|209954781 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 69.7 bits (169), Expect = 6e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 89 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 148
Query: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 149 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 207
Query: 122 LRKHSAKRCGCI 133
+ + SA CGC+
Sbjct: 208 VDRLSATACGCL 219
>gi|209954778 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 69.7 bits (169), Expect = 6e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 97 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 156
Query: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 157 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 215
Query: 122 LRKHSAKRCGCI 133
+ + SA CGC+
Sbjct: 216 VDRLSATACGCL 227
>gi|209954776 neurotrophic factor artemin isoform 1 precursor [Homo
sapiens]
Length = 220
Score = 69.7 bits (169), Expect = 6e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 89 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 148
Query: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 149 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 207
Query: 122 LRKHSAKRCGCI 133
+ + SA CGC+
Sbjct: 208 VDRLSATACGCL 219
>gi|209977029 neurotrophic factor artemin isoform 3 precursor [Homo
sapiens]
Length = 228
Score = 69.7 bits (169), Expect = 6e-13
Identities = 47/132 (35%), Positives = 66/132 (50%), Gaps = 10/132 (7%)
Query: 11 APHRVRLPAANPENSR-----GKGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR 65
AP P+A P R G G R + RGC L + + V LGLG+ + E + FR
Sbjct: 97 APPPPAPPSALPRGGRAARAGGPGSRARAAGARGCRLRSQLVPVRALGLGHRSDELVRFR 156
Query: 66 YCSGSCDAAETTYDKILKNLSRNRRL----VSDKVGQACCRPIAFDDDLSFLDDNLVYHI 121
+CSGSC A + +D L +L L S V Q CCRP + + +SF+D N +
Sbjct: 157 FCSGSCRRARSPHDLSLASLLGAGALRPPPGSRPVSQPCCRPTRY-EAVSFMDVNSTWRT 215
Query: 122 LRKHSAKRCGCI 133
+ + SA CGC+
Sbjct: 216 VDRLSATACGCL 227
>gi|4758974 persephin precursor [Homo sapiens]
Length = 156
Score = 68.2 bits (165), Expect = 2e-12
Identities = 41/103 (39%), Positives = 58/103 (56%), Gaps = 6/103 (5%)
Query: 31 RGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCD-AAETTYDKILKNLSRNR 89
R +R + C L ++ L+V +LGLGY ++E++IFRYC+GSC A T + L L
Sbjct: 57 RLRRALSGPCQLWSLTLSVAELGLGYASEEKVIFRYCAGSCPRGARTQHGLALARLQGQG 116
Query: 90 RLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKHSAKRCGC 132
R G CCRP + D++FLDD + L + SA CGC
Sbjct: 117 R----AHGGPCCRPTRY-TDVAFLDDRHRWQRLPQLSAAACGC 154
>gi|7705308 growth differentiation factor 2 [Homo sapiens]
Length = 429
Score = 32.3 bits (72), Expect = 0.11
Identities = 31/120 (25%), Positives = 43/120 (35%), Gaps = 25/120 (20%)
Query: 30 RRGQRGKNRGCVLTAIHLNVTDLGLG--------YETKEELIFRYCSGSC-----DAAET 76
R+ G C T++ +N D+G YE E C G C D
Sbjct: 317 RKRSAGAGSHCQKTSLRVNFEDIGWDSWIIAPKEYEAYE------CKGGCFFPLADDVTP 370
Query: 77 TYDKILKNLSRNRRLVSDKVGQACCRPIAFDDDLSFLDDNLVYHILRKH----SAKRCGC 132
T I++ L + KVG+ACC P D++ L+ H S CGC
Sbjct: 371 TKHAIVQTLVHLK--FPTKVGKACCVPTKLSPISVLYKDDMGVPTLKYHYEGMSVAECGC 428
>gi|4503969 growth differentiation factor 5 preproprotein [Homo
sapiens]
Length = 501
Score = 31.2 bits (69), Expect = 0.25
Identities = 26/115 (22%), Positives = 46/115 (40%), Gaps = 12/115 (10%)
Query: 28 KGRRGQRGKNRGCVLTAIHLNVTDLGLGYETKEELIFR--YCSGSCD-----AAETTYDK 80
+G+R + C A+H+N D+G L + +C G C+ E T
Sbjct: 388 QGKRPSKNLKARCSRKALHVNFKDMGWDDWIIAPLEYEAFHCEGLCEFPLRSHLEPTNHA 447
Query: 81 ILKNLSRNRRLVSDKVGQACCRPIAFDD-DLSFLD--DNLVYHILRKHSAKRCGC 132
+++ L + + + CC P + F+D +N+VY + CGC
Sbjct: 448 VIQTLMNS--MDPESTPPTCCVPTRLSPISILFIDSANNVVYKQYEDMVVESCGC 500
>gi|126507087 bone morphogenetic protein 3 preproprotein [Homo
sapiens]
Length = 472
Score = 29.3 bits (64), Expect = 0.97
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 11/131 (8%)
Query: 12 PHRVRLPAANPENSRGKGRRGQRGKNRGCVLTAIHLNVTDLGLG--YETKEELIFRYCSG 69
PHR E + K RR Q + R C + ++ D+G + + YCSG
Sbjct: 342 PHRKSQTLQFDEQTLKKARRKQWIEPRNCARRYLKVDFADIGWSEWIISPKSFDAYYCSG 401
Query: 70 SCD-----AAETTYDKILKNLSRNRRLVSDKVGQACCRPIAFDD-DLSFLDD--NLVYHI 121
+C + + + ++++ R +V + + CC P + F D+ N+V +
Sbjct: 402 ACQFPMPKSLKPSNHATIQSIVRAVGVVPG-IPEPCCVPEKMSSLSILFFDENKNVVLKV 460
Query: 122 LRKHSAKRCGC 132
+ + C C
Sbjct: 461 YPNMTVESCAC 471
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 27.7 bits (60), Expect = 2.8
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 6/67 (8%)
Query: 37 NRGCVLTAIHLNVTDLGLGYETKEELIFRYCSGSCDAAETTYDKILKNLSRNRRLVSDKV 96
N CV A +L V + ++ + FR+ +G+C +++ N++R S +
Sbjct: 1627 NYTCVCPAEYLQVNGGNNCMDMRKSVCFRHYNGTCQ------NELAFNVTRKMCCCSYNI 1680
Query: 97 GQACCRP 103
GQA RP
Sbjct: 1681 GQAWNRP 1687
>gi|24234690 meiotic recombination 11 homolog A isoform 2 [Homo
sapiens]
Length = 680
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 19 AANPENSRGKGRRGQRGKN 37
A N RG+GRRG RG+N
Sbjct: 565 ATNKGRGRGRGRRGGRGQN 583
>gi|5031923 meiotic recombination 11 homolog A isoform 1 [Homo
sapiens]
Length = 708
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 19 AANPENSRGKGRRGQRGKN 37
A N RG+GRRG RG+N
Sbjct: 565 ATNKGRGRGRGRRGGRGQN 583
>gi|21361870 chromosome 11 open reading frame 17 [Homo sapiens]
Length = 210
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 GCRGCLPGAAPHRVRLPAANPE 23
GC G L APH + PAA P+
Sbjct: 47 GCMGVLAREAPHLEKQPAAGPQ 68
>gi|116174740 chromosome 11 open reading frame 17 [Homo sapiens]
Length = 210
Score = 26.9 bits (58), Expect = 4.8
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 2 GCRGCLPGAAPHRVRLPAANPE 23
GC G L APH + PAA P+
Sbjct: 47 GCMGVLAREAPHLEKQPAAGPQ 68
>gi|153791497 ciliary rootlet coiled-coil [Homo sapiens]
Length = 2017
Score = 26.2 bits (56), Expect = 8.2
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 11/59 (18%)
Query: 16 RLPAANPENSRGKGRRGQRGKNRGC----VLTAIH-------LNVTDLGLGYETKEELI 63
R P+ +S G+GR +RG + C L IH L V D+ YE ++L+
Sbjct: 491 RTPSPPRRSSPGRGRSPRRGPSPACSDSSTLALIHSALHKRQLQVQDMRGRYEASQDLL 549
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.140 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,390,295
Number of Sequences: 37866
Number of extensions: 224344
Number of successful extensions: 679
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 653
Number of HSP's gapped (non-prelim): 19
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.