Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C11orf17 Sequence: fasta or formatted (210aa) NCBI GI: 21361870
Description:

chromosome 11 open reading frame 17

Not currently referenced in the text

Other entries for this name:
alt mRNA {210aa} chromosome 11 open reading frame 17
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         20           4
 C cysteine            1.9          4           1
 D aspartate           4.8         10           1
 E glutamate           7.6         16           2
 F phenylalanine       1.4          3           1
 G glycine             8.1         17           2
 H histidine           3.3          7           1
 I isoleucine          1.9          4           1
 K lysine              5.2         11           2
 L leucine             8.1         17           1
 M methionine          2.4          5           1
 N asparagine          2.4          5           1
 P proline             6.2         13           2
 Q glutamine           3.8          8           1
 R arginine            8.1         17           2
 S serine              8.6         18           2
 T threonine           4.3          9           1
 V valine              7.6         16           2
 W tryptophan          0.5          1           1
 Y tyrosine            4.3          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chromosome 11 open reading frame 17 
C11orf17              1.000   chromosome 11 open reading frame 17 
SH3PXD2B              0.020   SH3 and PX domains 2B 
ZNF213                0.020   zinc finger protein 213 
ZNF213                0.020   zinc finger protein 213 
RBM5                  0.015   RNA binding motif protein 5 
KIAA1529              0.012   hypothetical protein LOC57653 
ZFP37                 0.012   zinc finger protein 37 homolog 
BRD1                  0.012   bromodomain containing protein 1 
ZNF806                0.010   PREDICTED: zinc finger protein 806 
MAP4K2                0.010   mitogen-activated protein kinase kinase kinase kinas...
ZNF12                 0.010   zinc finger protein 12 isoform b 
ZNF12                 0.010   zinc finger protein 12 isoform a 
ARHGEF5L              0.007   Rho guanine nucleotide exchange factor (GEF) 5-like ...
ARHGEF5               0.007   rho guanine nucleotide exchange factor 5 
ARHGEF18              0.007   Rho/Rac guanine nucleotide exchange factor 18 isofo...
ARHGEF18              0.007   Rho/Rac guanine nucleotide exchange factor 18 isofor...
LOC100293129          0.007   PREDICTED: hypothetical protein 
ZNF546                0.007   zinc finger protein 546 
ZNF500                0.007   zinc finger protein 500 
C12orf52              0.007   hypothetical protein LOC84934 
ALMS1                 0.005   Alstrom syndrome 1 
LOC652119             0.005   PREDICTED: similar to putative DUX4 protein 
LOC652119             0.005   PREDICTED: similar to putative DUX4 protein 
ZNF136                0.005   zinc finger protein 136 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press