Search of human proteins with 40254988

Search of human proteins with 40254988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|40254988 LSM domain containing 1 [Homo sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|40254988 LSM domain containing 1 [Homo sapiens]                    353   3e-98
gi|38150007 small nuclear ribonucleoprotein polypeptide B/B' iso...    47   1e-05
gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isof...    47   1e-05
gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo ...    44   9e-05
gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo ...    44   9e-05
gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo ...    44   9e-05
gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo ...    44   9e-05
gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo s...    44   9e-05
gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]     37   0.011
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              33   0.094
gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo ...    30   0.80 
gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo ...    30   0.80 
gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]           30   1.4  
gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]           30   1.4  
gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]           30   1.4  
gi|29171682 interleukin 9 receptor precursor [Homo sapiens]            29   1.8  
gi|239743857 PREDICTED: hypothetical protein XP_002342979 [Homo ...    29   1.8  
gi|7657313 Lsm1 protein [Homo sapiens]                                 29   1.8  
gi|239755066 PREDICTED: similar to tight junction protein 2 (zon...    28   3.0  
gi|239749588 PREDICTED: hypothetical protein XP_002347097 [Homo ...    28   3.0  
gi|188497637 cell division cycle associated 7-like isoform 3 [Ho...    28   3.0  
gi|188497635 cell division cycle associated 7-like isoform 2 [Ho...    28   3.0  
gi|31542537 cell division cycle associated 7-like isoform 1 [Hom...    28   3.0  
gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo ...    28   4.0  
gi|62865885 connexin 37 [Homo sapiens]                                 28   4.0  
gi|4758224 integral membrane protein 2A [Homo sapiens]                 28   4.0  
gi|169214821 PREDICTED: hypothetical protein [Homo sapiens]            27   6.7  
gi|169215021 PREDICTED: hypothetical protein [Homo sapiens]            27   6.7  
gi|169214546 PREDICTED: hypothetical protein [Homo sapiens]            27   6.7  
gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]            27   6.7  

>gi|40254988 LSM domain containing 1 [Homo sapiens]
          Length = 173

 Score =  353 bits (907), Expect = 3e-98
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MAVAVGVRAAPVLGLARALVLGLRGSQAARWRGWGTAAPGSLWALCECPAGCRELWFRGR 60
           MAVAVGVRAAPVLGLARALVLGLRGSQAARWRGWGTAAPGSLWALCECPAGCRELWFRGR
Sbjct: 1   MAVAVGVRAAPVLGLARALVLGLRGSQAARWRGWGTAAPGSLWALCECPAGCRELWFRGR 60

Query: 61  AAWAARSERLLHPAQDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDR 120
           AAWAARSERLLHPAQDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDR
Sbjct: 61  AAWAARSERLLHPAQDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDR 120

Query: 121 DCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLTGPPYL 173
           DCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLTGPPYL
Sbjct: 121 DCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHHIVSIEVQRESLTGPPYL 173


>gi|38150007 small nuclear ribonucleoprotein polypeptide B/B'
           isoform B' [Homo sapiens]
          Length = 240

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSA--GEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP +S  A   E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|4507125 small nuclear ribonucleoprotein polypeptide B/B' isoform
           B [Homo sapiens]
          Length = 231

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSFSA--GEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP +S  A   E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|13027650 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSF--SAGEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP ++      E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|13027648 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSF--SAGEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP ++      E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|13027646 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSF--SAGEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP ++      E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|13027644 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSF--SAGEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP ++      E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|4507135 small nuclear ribonucleoprotein polypeptide N [Homo
           sapiens]
          Length = 240

 Score = 43.5 bits (101), Expect = 9e-05
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 9/75 (12%)

Query: 101 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSDSF--SAGEPRVLGLAMVPGHH 156
           MR  + DGR  +G F   D+  N+IL    EF  +KP ++      E RVLGL ++ G +
Sbjct: 17  MRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGEN 76

Query: 157 IVSIEVQRESLTGPP 171
           +VS+ V+     GPP
Sbjct: 77  LVSMTVE-----GPP 86


>gi|7706425 U6 snRNA-associated Sm-like protein LSm8 [Homo sapiens]
          Length = 96

 Score = 36.6 bits (83), Expect = 0.011
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)

Query: 93  LEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMV 152
           LE  +N+T+ +  +DGR +VG     D+  N+IL  + E  +   S    E  VLGL +V
Sbjct: 5   LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE--RVFSSSQGVEQVVLGLYIV 62

Query: 153 PGHHIVSI-EVQRES 166
            G ++  I E+  E+
Sbjct: 63  RGDNVAVIGEIDEET 77


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 33.5 bits (75), Expect = 0.094
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 20  VLGLRGSQAARWRG--WGTAAPGSLWALCECPAGCRELWFRGRAAWAARSERLLHPAQDS 77
           VLG        W G  WG + PG +W    C  GCRE++ RG      + E   +P   S
Sbjct: 358 VLGEVDPLCCVWEGYPWGFSEPG-VWGPRPCRVGCREVFGRGGQP-GPKYEIWTNPLHAS 415

Query: 78  DGER 81
            GER
Sbjct: 416 QGER 419


>gi|239756550 PREDICTED: hypothetical protein XP_002344932 [Homo
           sapiens]
          Length = 177

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 28  AARWRGWGTAAPGSLWALCECPAGCRELWFRGRAAWAA--RSERLLHPAQDSDGEREDSA 85
           AARWRG     PGS       P   R L   GR+A  A  R   L   A+  DGERE   
Sbjct: 93  AARWRGRPEPRPGS--PAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRP 150

Query: 86  AERARQQ 92
             R R +
Sbjct: 151 DARGRAE 157


>gi|239745514 PREDICTED: hypothetical protein XP_002343509 [Homo
           sapiens]
          Length = 177

 Score = 30.4 bits (67), Expect = 0.80
 Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 28  AARWRGWGTAAPGSLWALCECPAGCRELWFRGRAAWAA--RSERLLHPAQDSDGEREDSA 85
           AARWRG     PGS       P   R L   GR+A  A  R   L   A+  DGERE   
Sbjct: 93  AARWRGRPEPRPGS--PAGPAPTRARPLGAPGRSAPPARRRERELGTDARVGDGERELRP 150

Query: 86  AERARQQ 92
             R R +
Sbjct: 151 DARGRAE 157


>gi|169216044 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 92  QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSD--SFSAGEPRVL 147
           +L+  ++  M+  + +G    G F   D+  N+IL    EF  +KP +       E    
Sbjct: 153 RLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFW 212

Query: 148 GLAMVPGHHIVSIEVQ 163
           GL ++ G ++VS+ V+
Sbjct: 213 GLVLLHGENLVSMTVE 228


>gi|169215838 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 92  QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSD--SFSAGEPRVL 147
           +L+  ++  M+  + +G    G F   D+  N+IL    EF  +KP +       E    
Sbjct: 153 RLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFW 212

Query: 148 GLAMVPGHHIVSIEVQ 163
           GL ++ G ++VS+ V+
Sbjct: 213 GLVLLHGENLVSMTVE 228


>gi|169215637 PREDICTED: similar to hCG2041320 [Homo sapiens]
          Length = 318

 Score = 29.6 bits (65), Expect = 1.4
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 92  QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEF--LKPSD--SFSAGEPRVL 147
           +L+  ++  M+  + +G    G F   D+  N+IL    EF  +KP +       E    
Sbjct: 153 RLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVKQPELEEKHFW 212

Query: 148 GLAMVPGHHIVSIEVQ 163
           GL ++ G ++VS+ V+
Sbjct: 213 GLVLLHGENLVSMTVE 228


>gi|29171682 interleukin 9 receptor precursor [Homo sapiens]
          Length = 521

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 33  GWGTAAPGSLWALCECPAGCRE-----LWFRGRAAWAARSERLLHPA-QDSDGEREDSAA 86
           G GT  PG+L +    PAGC E     L +  +  WA  S  L  PA  DS+G R  S++
Sbjct: 378 GPGTRLPGNLSSEDVLPAGCTEWRVQTLAYLPQEDWAPTS--LTRPAPPDSEGSRSSSSS 435


>gi|239743857 PREDICTED: hypothetical protein XP_002342979 [Homo
           sapiens]
          Length = 163

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 70  LLHPAQDSDGEREDSAAERA---RQQLEALLNKTMRIRM--TDGRTLVGCFLCTDRDCNV 124
           +LH A DS G+ E  AA+R    R+     L   +++R   TD   L      T  DC+V
Sbjct: 45  VLHVAWDSKGKEE--AAKRQLLMRKNSYCFLIYILQVRKQNTDFGPLKQV---TGSDCSV 99

Query: 125 ILGSAQEFLKPSDSFSAGEPRVLGL-AMVPGHHIVSIEVQ 163
           +L S Q+    S+     EP VL L  + PG  + + E++
Sbjct: 100 LLNSEQKATDSSNPVPQTEPSVLNLHQLSPGFSMRTHELE 139


>gi|7657313 Lsm1 protein [Homo sapiens]
          Length = 133

 Score = 29.3 bits (64), Expect = 1.8
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 97  LNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKPSDSFSAGEPRVLGLAMVPGHH 156
           ++K   + + DGRTL+G     D+  N++L    E +     +    PR  G+ +V G +
Sbjct: 14  IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKY-GDIPR--GIFVVRGEN 70

Query: 157 IV---SIEVQRESLT 168
           +V    I++++ES T
Sbjct: 71  VVLLGEIDLEKESDT 85


>gi|239755066 PREDICTED: similar to tight junction protein 2 (zona
           occludens 2) [Homo sapiens]
          Length = 163

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 70  LLHPAQDSDGEREDSAAERA---RQQLEALLNKTMRIRM--TDGRTLVGCFLCTDRDCNV 124
           +LH A DS G+ E  AA+R    R+     L   +++R   TD   L      T  DC+V
Sbjct: 45  VLHVAWDSKGKEE--AAKRQLLMRKNSYCFLIYILQVRKQNTDFGPLKQV---TGSDCSV 99

Query: 125 ILGSAQEFLKPSDSFSAGEPRVLGL-AMVPGHHIVSIEVQ 163
           +L S Q+    S+     EP VL L  + PG  + + E++
Sbjct: 100 LLNSEQKATDSSNPVPQIEPSVLNLHQLSPGFSMRTHELE 139


>gi|239749588 PREDICTED: hypothetical protein XP_002347097 [Homo
           sapiens]
          Length = 163

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 11/100 (11%)

Query: 70  LLHPAQDSDGEREDSAAERA---RQQLEALLNKTMRIRM--TDGRTLVGCFLCTDRDCNV 124
           +LH A DS G+ E  AA+R    R+     L   +++R   TD   L      T  DC+V
Sbjct: 45  VLHVAWDSKGKEE--AAKRQLLMRKNSYCFLIYILQVRKQNTDFGPLKQV---TGSDCSV 99

Query: 125 ILGSAQEFLKPSDSFSAGEPRVLGL-AMVPGHHIVSIEVQ 163
           +L S Q+    S+     EP VL L  + PG  + + E++
Sbjct: 100 LLNSEQKATDSSNPVPQIEPSVLNLHQLSPGFSMRTHELE 139


>gi|188497637 cell division cycle associated 7-like isoform 3 [Homo
           sapiens]
          Length = 408

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 75  QDSDGEREDSAAERARQQLEALLNKTMRIR 104
           +DS  E ED + + +++  +ALL +TM I+
Sbjct: 147 EDSTSESEDDSRDESQESSDALLKRTMNIK 176


>gi|188497635 cell division cycle associated 7-like isoform 2 [Homo
           sapiens]
          Length = 420

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 75  QDSDGEREDSAAERARQQLEALLNKTMRIR 104
           +DS  E ED + + +++  +ALL +TM I+
Sbjct: 159 EDSTSESEDDSRDESQESSDALLKRTMNIK 188


>gi|31542537 cell division cycle associated 7-like isoform 1 [Homo
           sapiens]
          Length = 454

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 20/30 (66%)

Query: 75  QDSDGEREDSAAERARQQLEALLNKTMRIR 104
           +DS  E ED + + +++  +ALL +TM I+
Sbjct: 193 EDSTSESEDDSRDESQESSDALLKRTMNIK 222


>gi|239745480 PREDICTED: hypothetical protein XP_002343504 [Homo
           sapiens]
          Length = 243

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 9/77 (11%)

Query: 4   AVGVRAAPVLGLARALVLGLRGSQAARWRGWGTAAPGSLWAL-------CECPAGCRELW 56
           A+G    P  G  R  V   RG + A  R W  AA  +            + PAG R   
Sbjct: 159 ALGSGRPPCSGRRRLSVPAARGGEGATSRHWAPAASPAAGGAGKKDARKRKAPAGPRVA- 217

Query: 57  FRGRAAWAARSERLLHP 73
            RG A W    E+LL P
Sbjct: 218 -RGCAPWFLAREQLLGP 233


>gi|62865885 connexin 37 [Homo sapiens]
          Length = 333

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 38/149 (25%), Positives = 50/149 (33%), Gaps = 38/149 (25%)

Query: 2   AVAVGVRAAPVLGLARALVLGLRGSQAARWRGWG---------TAAPGSL---------- 42
           +  VG     VL + R L+LGL G        WG         TA PG            
Sbjct: 18  STVVGKIWLTVLFIFRILILGLAGESV-----WGDEQSDFECNTAQPGCTNVCYDQAFPI 72

Query: 43  -----WALCECPAGCRELWFRGRAAWAARSERLLH---------PAQDSDGEREDSAAER 88
                W L         L + G   + +R E  L          PA+D   ER  +A ER
Sbjct: 73  SHIRYWVLQFLFVSTPTLVYLGHVIYLSRREERLRQKEGELRALPAKDPQVERALAAVER 132

Query: 89  ARQQLEALLNKTMRIRMTDGRTLVGCFLC 117
              ++    +  +RIR     T V   LC
Sbjct: 133 QMAKISVAEDGRLRIRGALMGTYVASVLC 161


>gi|4758224 integral membrane protein 2A [Homo sapiens]
          Length = 263

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 12/25 (48%), Positives = 19/25 (76%)

Query: 87  ERARQQLEALLNKTMRIRMTDGRTL 111
           E ARQ +EALL++T+R ++  G+ L
Sbjct: 15  EEARQDVEALLSRTVRTQILTGKEL 39


>gi|169214821 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 8   RAAPVLGLARALVLGLRGSQAAR-------WRGWGTAAPG 40
           R  P LGLAR  ++   G++ +R       W GW    PG
Sbjct: 91  RRTPALGLARLPLIPGSGTRQSRRPTYQAHWAGWAPGRPG 130


>gi|169215021 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 8   RAAPVLGLARALVLGLRGSQAAR-------WRGWGTAAPG 40
           R  P LGLAR  ++   G++ +R       W GW    PG
Sbjct: 91  RRTPALGLARLPLIPGSGTRQSRRPTYQAHWAGWAPGRPG 130


>gi|169214546 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 275

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 8   RAAPVLGLARALVLGLRGSQAAR-------WRGWGTAAPG 40
           R  P LGLAR  ++   G++ +R       W GW    PG
Sbjct: 91  RRTPALGLARLPLIPGSGTRQSRRPTYQAHWAGWAPGRPG 130


>gi|34577102 ring finger protein 14 isoform 1 [Homo sapiens]
          Length = 474

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 74  AQDSDGEREDSAAERARQQLEALLNKTMRIRMTDGRTLVGC-----FLCTDRDCNVILGS 128
           A  SD ++E+   ERA Q +E+L N    I   D    + C     FLC+   C  +   
Sbjct: 172 AAGSDVDQEEIVDERAVQDVESLSNLIQEILDFDQAQQIKCFNSKLFLCSICFCEKLGSE 231

Query: 129 AQEFLK 134
              FL+
Sbjct: 232 CMYFLE 237


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,063,906
Number of Sequences: 37866
Number of extensions: 301295
Number of successful extensions: 903
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 889
Number of HSP's gapped (non-prelim): 37
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.