Guide to the Human Genome
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Name: LOC100289287 Sequence: fasta or formatted (163aa) NCBI GI: 239743857
Description:

PREDICTED: hypothetical protein XP_002342979

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         10           2
 C cysteine            1.8          3           1
 D aspartate           2.5          4           1
 E glutamate           5.5          9           2
 F phenylalanine       3.1          5           1
 G glycine             3.1          5           1
 H histidine           4.9          8           2
 I isoleucine          2.5          4           1
 K lysine              6.1         10           1
 L leucine            11.0         18           2
 M methionine          3.1          5           1
 N asparagine          3.7          6           1
 P proline             5.5          9           1
 Q glutamine           6.1         10           1
 R arginine            4.9          8           2
 S serine             11.0         18           2
 T threonine           5.5          9           1
 V valine              8.6         14           1
 W tryptophan          3.1          5           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342979 
LOC100292582          0.990   PREDICTED: similar to tight junction protein 2 (zon...
LOC100290406          0.990   PREDICTED: hypothetical protein XP_002347097 
LSMD1                 0.013   LSM domain containing 1 
TNIP1                 0.013   TNFAIP3 interacting protein 1 
SPESP1                0.013   sperm equatorial segment protein 1 
ATRNL1                0.010   attractin-like 1 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
GBA                   0.010   glucocerebrosidase precursor 
C2orf55               0.006   hypothetical protein LOC343990 
HCN1                  0.006   hyperpolarization activated cyclic nucleotide-gated...
ABCA7                 0.006   ATP-binding cassette, sub-family A, member 7 
ATP2B3                0.006   plasma membrane calcium ATPase 3 isoform 3b 
ATP2B3                0.006   plasma membrane calcium ATPase 3 isoform 3a 
CCDC141               0.006   coiled-coil domain containing 141 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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