Guide to the Human Genome
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Name: CENPQ Sequence: fasta or formatted (268aa) NCBI GI: 40068061
Description:

centromere protein Q

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2         14           2
 C cysteine            0.4          1           1
 D aspartate           3.4          9           1
 E glutamate          10.1         27           5
 F phenylalanine       0.7          2           1
 G glycine             2.2          6           1
 H histidine           2.6          7           1
 I isoleucine          4.9         13           1
 K lysine             13.8         37           2
 L leucine            12.7         34           2
 M methionine          4.1         11           2
 N asparagine          7.5         20           1
 P proline             2.6          7           2
 Q glutamine           6.3         17           2
 R arginine            3.4          9           1
 S serine              9.0         24           2
 T threonine           6.0         16           2
 V valine              4.1         11           2
 W tryptophan          0.4          1           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centromere protein Q 
IFT74                 0.051   coiled-coil domain containing 2 isoform a 
IFT74                 0.051   coiled-coil domain containing 2 isoform a 
IFT74                 0.051   coiled-coil domain containing 2 isoform a 
EEA1                  0.047   early endosome antigen 1, 162kD 
CENPE                 0.045   centromere protein E 
C10orf118             0.045   CTCL tumor antigen L14-2 
EPS15                 0.045   epidermal growth factor receptor pathway substrate 15...
EPS15                 0.043   epidermal growth factor receptor pathway substrate ...
MYH13                 0.041   myosin, heavy polypeptide 13, skeletal muscle [Homo...
GOLGA4                0.041   golgi autoantigen, golgin subfamily a, 4 
CENPF                 0.041   centromere protein F 
MYH10                 0.039   myosin, heavy polypeptide 10, non-muscle 
GCC2                  0.037   GRIP and coiled-coil domain-containing 2 
MYH3                  0.035   myosin, heavy chain 3, skeletal muscle, embryonic [H...
CCDC88C               0.035   DVL-binding protein DAPLE 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.035   coiled-coil domain containing 88A isoform 1 
ITSN2                 0.035   intersectin 2 isoform 1 
ITSN2                 0.035   intersectin 2 isoform 2 
ITSN2                 0.035   intersectin 2 isoform 3 
MYH14                 0.033   myosin, heavy chain 14 isoform 1 
MYH14                 0.033   myosin, heavy chain 14 isoform 2 
MYH14                 0.033   myosin, heavy chain 14 isoform 3 
MACF1                 0.033   microfilament and actin filament cross-linker protei...
MACF1                 0.033   microfilament and actin filament cross-linker protei...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.033   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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