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Search of human proteins with 39995082
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo
sapiens]
(767 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens] 1577 0.0
gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens] 89 2e-17
gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens] 89 2e-17
gi|32698918 NOL1/NOP2/Sun domain family, member 6 [Homo sapiens] 82 1e-15
gi|11545785 NOL1/NOP2/Sun domain family, member 3 [Homo sapiens] 75 3e-13
gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Hom... 74 5e-13
gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo... 74 5e-13
gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens] 67 5e-11
gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 49 1e-05
gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Ho... 49 1e-05
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 43 0.001
gi|88758572 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 37 0.069
gi|88758570 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 37 0.069
gi|21717803 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens] 37 0.069
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 36 0.15
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 35 0.20
gi|166295204 hypothetical protein LOC80127 [Homo sapiens] 33 1.3
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens] 32 1.7
gi|54112401 calmodulin-binding transcription activator 1 [Homo s... 32 2.2
gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosom... 32 2.9
gi|28274705 family with sequence similarity 9, member A [Homo sa... 32 2.9
gi|91208420 bassoon protein [Homo sapiens] 31 3.8
gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens] 31 3.8
gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens] 31 3.8
gi|169217315 PREDICTED: hypothetical protein [Homo sapiens] 31 4.9
gi|113430659 PREDICTED: hypothetical protein [Homo sapiens] 31 4.9
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 31 4.9
>gi|39995082 NOL1/NOP2/Sun domain family, member 2 [Homo sapiens]
Length = 767
Score = 1577 bits (4083), Expect = 0.0
Identities = 767/767 (100%), Positives = 767/767 (100%)
Query: 1 MGRRSRGRRLQQQQRPEDAEDGAEGGGKRGEAGWEGGYPEIVKENKLFEHYYQELKIVPE 60
MGRRSRGRRLQQQQRPEDAEDGAEGGGKRGEAGWEGGYPEIVKENKLFEHYYQELKIVPE
Sbjct: 1 MGRRSRGRRLQQQQRPEDAEDGAEGGGKRGEAGWEGGYPEIVKENKLFEHYYQELKIVPE 60
Query: 61 GEWGQFMDALREPLPATLRITGYKSHAKEILHCLKNKYFKELEDLEVDGQKVEVPQPLSW 120
GEWGQFMDALREPLPATLRITGYKSHAKEILHCLKNKYFKELEDLEVDGQKVEVPQPLSW
Sbjct: 61 GEWGQFMDALREPLPATLRITGYKSHAKEILHCLKNKYFKELEDLEVDGQKVEVPQPLSW 120
Query: 121 YPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKI 180
YPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKI
Sbjct: 121 YPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKI 180
Query: 181 LDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVN 240
LDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVN
Sbjct: 181 LDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVN 240
Query: 241 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 300
HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL
Sbjct: 241 HDASSIPRLQIDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQL 300
Query: 301 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 360
RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG
Sbjct: 301 RIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPG 360
Query: 361 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 420
ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG
Sbjct: 361 ITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTG 420
Query: 421 GFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTG 480
GFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTG
Sbjct: 421 GFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTG 480
Query: 481 DTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALD 540
DTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALD
Sbjct: 481 DTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALD 540
Query: 541 PSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRNNSGEEFDCA 600
PSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRNNSGEEFDCA
Sbjct: 541 PSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRNNSGEEFDCA 600
Query: 601 FRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRKLSSETYSQAKDLAKGSIVLK 660
FRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRKLSSETYSQAKDLAKGSIVLK
Sbjct: 601 FRLAQEGIYTLYPFINSRIITVSMEDVKILLTQENPFFRKLSSETYSQAKDLAKGSIVLK 660
Query: 661 YEPDSANPDALQCPIVLCGWRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVILTNE 720
YEPDSANPDALQCPIVLCGWRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVILTNE
Sbjct: 661 YEPDSANPDALQCPIVLCGWRGKASIRTFVPKNERLHYLRMMGLEVLGEKKKEGVILTNE 720
Query: 721 SAASTGQPDNDVTEGQRAGEPNSPDAEEANSPDVTAGCDPAGVHPPR 767
SAASTGQPDNDVTEGQRAGEPNSPDAEEANSPDVTAGCDPAGVHPPR
Sbjct: 721 SAASTGQPDNDVTEGQRAGEPNSPDAEEANSPDVTAGCDPAGVHPPR 767
>gi|76150625 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 88.6 bits (218), Expect = 2e-17
Identities = 108/463 (23%), Positives = 171/463 (36%), Gaps = 107/463 (23%)
Query: 26 GGKRGEAGWEGGYPEIVKENKLFEHYYQE------LKIVPEGEWGQFMDALREPLPATLR 79
G +R E Y +K++ + Y + + + P E +F++A P P TLR
Sbjct: 250 GAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLR 309
Query: 80 ITGYKSHAKEILHCLKNK--YFKELEDLEVDGQKV-EVPQPLSWYPEELAWHTNLSRKIL 136
K+ +++ L N+ L G V + P+ PE LA H L
Sbjct: 310 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYML----- 364
Query: 137 RKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIE 196
Q A SM+P + L + H +ILDMC APG KT+ + +
Sbjct: 365 ------------------------QGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQ 400
Query: 197 MLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGR 256
++ G ++AND + +R +V RL ++ ++D P++ V G
Sbjct: 401 LMK-------NTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKV---VGG- 449
Query: 257 KEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQL----AE 312
+DR+L D PCSG G + K+ V + L+ LQ + + +
Sbjct: 450 -----FDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKT 504
Query: 313 GGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQ 372
GG +VY TCS+ E+E V+ L+K L + G
Sbjct: 505 GGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGF----------------- 547
Query: 373 WFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
T+ R F P L R PH N GFF+A K
Sbjct: 548 -------------TRFRERRFHPS---------LRSTRRFYPHTHNMDGFFIAKFKK--- 582
Query: 433 MPWNKRQPKLQGKSAETREST-----QLSPADLTEGKPTDPSK 470
++ P+ Q ++ET T Q+ P +P +K
Sbjct: 583 --FSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQPAKKAK 623
>gi|76150623 nucleolar protein 1, 120kDa [Homo sapiens]
Length = 808
Score = 88.6 bits (218), Expect = 2e-17
Identities = 108/463 (23%), Positives = 171/463 (36%), Gaps = 107/463 (23%)
Query: 26 GGKRGEAGWEGGYPEIVKENKLFEHYYQE------LKIVPEGEWGQFMDALREPLPATLR 79
G +R E Y +K++ + Y + + + P E +F++A P P TLR
Sbjct: 250 GAQREEGRSRSEYLNRLKKDLAIYYSYGDFLLGKLMDLFPLSELVEFLEANEVPRPVTLR 309
Query: 80 ITGYKSHAKEILHCLKNK--YFKELEDLEVDGQKV-EVPQPLSWYPEELAWHTNLSRKIL 136
K+ +++ L N+ L G V + P+ PE LA H L
Sbjct: 310 TNTLKTRRRDLAQALINRGVNLDPLGKWSKTGLVVYDSSVPIGATPEYLAGHYML----- 364
Query: 137 RKSPHLEKFHQFLVSETESGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIE 196
Q A SM+P + L + H +ILDMC APG KT+ + +
Sbjct: 365 ------------------------QGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQ 400
Query: 197 MLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGR 256
++ G ++AND + +R +V RL ++ ++D P++ V G
Sbjct: 401 LMK-------NTGVILANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKV---VGG- 449
Query: 257 KEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQL----AE 312
+DR+L D PCSG G + K+ V + L+ LQ + + +
Sbjct: 450 -----FDRVLLDAPCSGTGVISKDPAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKT 504
Query: 313 GGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQ 372
GG +VY TCS+ E+E V+ L+K L + G
Sbjct: 505 GGYLVYCTCSITVEENEWVVDYALKKRNVRLVPTGLDFGQEGF----------------- 547
Query: 373 WFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
T+ R F P L R PH N GFF+A K
Sbjct: 548 -------------TRFRERRFHPS---------LRSTRRFYPHTHNMDGFFIAKFKK--- 582
Query: 433 MPWNKRQPKLQGKSAETREST-----QLSPADLTEGKPTDPSK 470
++ P+ Q ++ET T Q+ P +P +K
Sbjct: 583 --FSNSIPQSQTGNSETATPTNVDLPQVIPKSENSSQPAKKAK 623
>gi|32698918 NOL1/NOP2/Sun domain family, member 6 [Homo sapiens]
Length = 469
Score = 82.4 bits (202), Expect = 1e-15
Identities = 84/276 (30%), Positives = 121/276 (43%), Gaps = 30/276 (10%)
Query: 161 QEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKR 220
Q S + +LN +P KILD+CAAPG KTT + ++H +G VIA D +
Sbjct: 219 QNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMH-------DQGEVIALDKIFNK 271
Query: 221 CYLLVHQAKRLSSPCIMVVNHDASSIPRLQI--DVDGRKEIL--FYDRILCDVPCSGDGT 276
+ A L I D + +L + D +G L +DRIL D PCSG G
Sbjct: 272 VEKIKQNALLLGLNSIRAFCFDGTKAVKLDMVEDTEGEPPFLPESFDRILLDAPCSGMG- 330
Query: 277 MRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLL 336
R N+ W+ LQ ++ T + L G +VYSTC++ E+E +A L
Sbjct: 331 QRPNMAC--TWSVKEVASYQPLQRKLFTAAVQLLKPEGVLVYSTCTITLAENEEQVAWAL 388
Query: 337 EKSEGALELADVSNELPGLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTMFPPK 396
K L+L ++ G + M G K Q F D AVP P
Sbjct: 389 TKFP-CLQLQPQEPQIGG-EGMRGAGLSCEQLKQLQRF-DPSAVP-----------LPDT 434
Query: 397 DPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
D + L+ E LR+ ++++ GFF+A VK S
Sbjct: 435 DMDSLREARREDMLRLA--NKDSIGFFIAKFVKCKS 468
>gi|11545785 NOL1/NOP2/Sun domain family, member 3 [Homo sapiens]
Length = 340
Score = 74.7 bits (182), Expect = 3e-13
Identities = 81/297 (27%), Positives = 133/297 (44%), Gaps = 52/297 (17%)
Query: 84 KSHAKEILHCLKNKYFKELEDLEVDGQKVEVPQPLSW----------YPEEL-------A 126
K K +L + +Y KEL D +++ + P W YP EL
Sbjct: 15 KQICKVVLDHFEKQYSKELGDAWNTVREI-LTSPSCWQYAVLLNRFNYPFELEKDLHLKG 73
Query: 127 WHTNLSRKILRKSP-----HLEKFHQFLVSETES-GNISRQ---EAVSMIPPLLLNVRPH 177
+HT LS+ L P +L + + SE GN+ + A S++P L L +R
Sbjct: 74 YHT-LSQGSLPNYPKSVKCYLSRTPGRIPSERHQIGNLKKYYLLNAASLLPVLALELRDG 132
Query: 178 HKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYLLVHQAKR-LSSPCI 236
K+LD+CAAPG K+ L++ G++ N+ D+ R L + + P I
Sbjct: 133 EKVLDLCAAPGGKSIALLQCA--------CPGYLHCNEYDSLRLRWLRQTLESFIPQPLI 184
Query: 237 MVVNHDASSIPRLQIDVDGRK----EILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNS 292
V+ ++DGRK + +D++L D PCS D + + D K ++
Sbjct: 185 NVIKVS---------ELDGRKMGDAQPEMFDKVLVDAPCSNDRSWLFSSDSQKASCRISQ 235
Query: 293 LQ-LHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLEKSEGALELADV 348
+ L LQ+ + + L GG +VYSTC+L+ E++ VI+ +L S G + D+
Sbjct: 236 RRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEIL-NSHGNIMPMDI 291
>gi|23199998 NOL1/NOP2/Sun domain family, member 5 isoform 1 [Homo
sapiens]
Length = 466
Score = 73.9 bits (180), Expect = 5e-13
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 20/211 (9%)
Query: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
+G++ Q+ S +P +LL+ P ++D CAAPG+KT+ L +L +G + A
Sbjct: 205 AGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK-------NQGKIFAF 257
Query: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGD 274
D+D KR + R C + D ++ D R + Y IL D CSG
Sbjct: 258 DLDAKRLASMATLLARAGVSCCELAEEDFLAVS----PSDPRYHEVHY--ILLDPSCSGS 311
Query: 275 GTMRKNIDVWKKWTTLNSLQLH---GLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAV 331
G + ++ T + ++LH G Q R A A R+VYSTCSL E+E V
Sbjct: 312 GMPSRQLEEPGAGTP-SPVRLHALAGFQQR-ALCHALTFPSLQRLVYSTCSLCQEENEDV 369
Query: 332 IASLLEKSEGALELADVSNELP--GLKWMPG 360
+ L+++ GA LA P GL PG
Sbjct: 370 VRDALQQNPGAFRLAPALPAWPHRGLSTFPG 400
>gi|8922322 NOL1/NOP2/Sun domain family, member 5 isoform 2 [Homo
sapiens]
Length = 429
Score = 73.9 bits (180), Expect = 5e-13
Identities = 65/211 (30%), Positives = 97/211 (45%), Gaps = 20/211 (9%)
Query: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
+G++ Q+ S +P +LL+ P ++D CAAPG+KT+ L +L +G + A
Sbjct: 205 AGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLK-------NQGKIFAF 257
Query: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGD 274
D+D KR + R C + D ++ D R + Y IL D CSG
Sbjct: 258 DLDAKRLASMATLLARAGVSCCELAEEDFLAVS----PSDPRYHEVHY--ILLDPSCSGS 311
Query: 275 GTMRKNIDVWKKWTTLNSLQLH---GLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAV 331
G + ++ T + ++LH G Q R A A R+VYSTCSL E+E V
Sbjct: 312 GMPSRQLEEPGAGTP-SPVRLHALAGFQQR-ALCHALTFPSLQRLVYSTCSLCQEENEDV 369
Query: 332 IASLLEKSEGALELADVSNELP--GLKWMPG 360
+ L+++ GA LA P GL PG
Sbjct: 370 VRDALQQNPGAFRLAPALPAWPHRGLSTFPG 400
>gi|40316918 NOL1/NOP2/Sun domain family 4 protein [Homo sapiens]
Length = 384
Score = 67.4 bits (163), Expect = 5e-11
Identities = 63/240 (26%), Positives = 105/240 (43%), Gaps = 26/240 (10%)
Query: 104 DLEVDGQKVEVPQPLSWYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETESGNISRQEA 163
+L+ +G + P P SW A NL R + +F +A
Sbjct: 107 ELQSEGGQSAAPSPASW-----ACSPNL-RCFTFDRGDISRFPPARPGSLGVMEYYLMDA 160
Query: 164 VSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIANDVDNKRCYL 223
S++P L L ++P +LD+CAAPG KT L++ + AND+ R
Sbjct: 161 ASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN--------LAANDLSPSR--- 209
Query: 224 LVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRK----EILFYDRILCDVPCSGD--GTM 277
+ + +++ + D + + DGRK E YDR+L DVPC+ D
Sbjct: 210 -IARLQKILHSYVPEEIRDGNQVR--VTSWDGRKWGELEGDTYDRVLVDVPCTTDRHSLH 266
Query: 278 RKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIASLLE 337
+ +++K+ L LQ+++ G GG +VYSTCSL+ +++E V+ +E
Sbjct: 267 EEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIE 326
>gi|87298836 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 49.3 bits (116), Expect = 1e-05
Identities = 71/292 (24%), Positives = 108/292 (36%), Gaps = 66/292 (22%)
Query: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
+G++ Q+ S +P +LL+ R KT+ L +L +G + A
Sbjct: 21 AGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLKN-------QGKIFAF 73
Query: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGD 274
D+D +R + C + D ++ L D R + Y +L D CSG
Sbjct: 74 DLDARRLASMATLLAWAGVSCCELAEEDFLAVSPL----DPRYREVHY--VLLDPSCSGS 127
Query: 275 GTMRKNIDVWKKWTTLNSLQLH---GLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAV 331
G + ++ T + ++LH G Q R A A R+VYS CSL E+E +
Sbjct: 128 GMPSRQLEEPGAGTP-SPVRLHALAGFQQR-ALCHALTFPSLQRLVYSMCSLCQEENEDM 185
Query: 332 IASLLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIR 389
+ L+++ GA LA P GL PG
Sbjct: 186 VQDALQQNPGAFRLAPALPARPHRGLSTFPG----------------------------- 216
Query: 390 PTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441
E CLR P +GGFFVAV +++ MP + Q K
Sbjct: 217 ----------------AEHCLRASPKTTLSGGFFVAV-IERVEMPTSASQAK 251
>gi|23200000 NOL1/NOP2/Sun domain family, member 5C isoform 1 [Homo
sapiens]
Length = 315
Score = 49.3 bits (116), Expect = 1e-05
Identities = 71/292 (24%), Positives = 108/292 (36%), Gaps = 66/292 (22%)
Query: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
+G++ Q+ S +P +LL+ R KT+ L +L +G + A
Sbjct: 21 AGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLKN-------QGKIFAF 73
Query: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGD 274
D+D +R + C + D ++ L D R + Y +L D CSG
Sbjct: 74 DLDARRLASMATLLAWAGVSCCELAEEDFLAVSPL----DPRYREVHY--VLLDPSCSGS 127
Query: 275 GTMRKNIDVWKKWTTLNSLQLH---GLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAV 331
G + ++ T + ++LH G Q R A A R+VYS CSL E+E +
Sbjct: 128 GMPSRQLEEPGAGTP-SPVRLHALAGFQQR-ALCHALTFPSLQRLVYSMCSLCQEENEDM 185
Query: 332 IASLLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIR 389
+ L+++ GA LA P GL PG
Sbjct: 186 VQDALQQNPGAFRLAPALPARPHRGLSTFPG----------------------------- 216
Query: 390 PTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441
E CLR P +GGFFVAV +++ MP + Q K
Sbjct: 217 ----------------AEHCLRASPKTTLSGGFFVAV-IERVEMPTSASQAK 251
>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
sapiens]
Length = 291
Score = 42.7 bits (99), Expect = 0.001
Identities = 64/289 (22%), Positives = 98/289 (33%), Gaps = 84/289 (29%)
Query: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
+G++ Q+ S +P +LL+ R KT+ L +L +G + A
Sbjct: 21 AGHLILQDRASCLPAMLLDPRQAPMSWMPVPPQAIKTSHLAALLKN-------QGKIFAF 73
Query: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCDVPCSGD 274
D+D +R + C + D ++ L D R + Y +L D CSG
Sbjct: 74 DLDARRLASMATLLAWAGVSCCELAEEDFLAVSPL----DPRYREVHY--VLLDPSCSGS 127
Query: 275 GTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIAS 334
G + ++ T R+VYS CSL E+E ++
Sbjct: 128 GMPSRQLEEPGAGTP-----------------------SPRLVYSMCSLCQEENEDMVQD 164
Query: 335 LLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQWFTDWDAVPHSRHTQIRPTM 392
L+++ GA LA P GL PG
Sbjct: 165 ALQQNPGAFRLAPALPARPHRGLSTFPG-------------------------------- 192
Query: 393 FPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPK 441
E CLR P +GGFFVAV +++ MP + Q K
Sbjct: 193 -------------AEHCLRASPKTTLSGGFFVAV-IERVEMPTSASQAK 227
>gi|88758572 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 37.0 bits (84), Expect = 0.069
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 48/129 (37%)
Query: 315 RMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQ 372
R+VYS CSL E+E ++ L+++ GA LA P GL PG
Sbjct: 41 RLVYSMCSLCQEENEDMVPDALQQNPGAFRLAPALPARPHRGLSTFPG------------ 88
Query: 373 WFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
E CLR P +GGFFVAV +++
Sbjct: 89 ---------------------------------AEHCLRASPKTTLSGGFFVAV-IERVE 114
Query: 433 MPWNKRQPK 441
MP + Q K
Sbjct: 115 MPTSASQAK 123
>gi|88758570 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 37.0 bits (84), Expect = 0.069
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 48/129 (37%)
Query: 315 RMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQ 372
R+VYS CSL E+E ++ L+++ GA LA P GL PG
Sbjct: 41 RLVYSMCSLCQEENEDMVPDALQQNPGAFRLAPALPARPHRGLSTFPG------------ 88
Query: 373 WFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
E CLR P +GGFFVAV +++
Sbjct: 89 ---------------------------------AEHCLRASPKTTLSGGFFVAV-IERVE 114
Query: 433 MPWNKRQPK 441
MP + Q K
Sbjct: 115 MPTSASQAK 123
>gi|21717803 NOL1/NOP2/Sun domain family, member 5B [Homo sapiens]
Length = 154
Score = 37.0 bits (84), Expect = 0.069
Identities = 35/129 (27%), Positives = 47/129 (36%), Gaps = 48/129 (37%)
Query: 315 RMVYSTCSLNPIEDEAVIASLLEKSEGALELADVSNELP--GLKWMPGITQWKVMTKDGQ 372
R+VYS CSL E+E ++ L+++ GA LA P GL PG
Sbjct: 41 RLVYSMCSLCQEENEDMVPDALQQNPGAFRLAPALPARPHRGLSTFPG------------ 88
Query: 373 WFTDWDAVPHSRHTQIRPTMFPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSS 432
E CLR P +GGFFVAV +++
Sbjct: 89 ---------------------------------AEHCLRASPKTTLSGGFFVAV-IERVE 114
Query: 433 MPWNKRQPK 441
MP + Q K
Sbjct: 115 MPTSASQAK 123
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 35.8 bits (81), Expect = 0.15
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
Query: 453 TQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKL 512
++LSP E P P ESP+ + ++ ED + +D PPP +
Sbjct: 660 SRLSPPP--EESPLSPPPEESPTSPPPEASRLSPPPEDSPTSPPPEDSPASPPPEDSLMS 717
Query: 513 FGFKEDPFVFIPEDDPLFPPIE 534
+E P + +PE+ L P E
Sbjct: 718 LPLEESPLLPLPEEPQLCPRSE 739
Score = 35.4 bits (80), Expect = 0.20
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 2/95 (2%)
Query: 440 PKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSKKD 499
P L+ + E++ LSP E P P E P+ + ++ E+ + ++
Sbjct: 530 PALETPLSPPPEASPLSPP--FEESPLSPPPEELPTSPPPEASRLSPPPEESPMSPPPEE 587
Query: 500 GVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIE 534
PPP F+E P PE+ PL PP E
Sbjct: 588 SPMSPPPEASRLFPPFEESPLSPPPEESPLSPPPE 622
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 35.4 bits (80), Expect = 0.20
Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 14/88 (15%)
Query: 428 VKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHA 487
++ S P + + P LQ TQ+ +T P P+ SP+ +G G H
Sbjct: 1 MQSSPSPAHPQLPVLQ---------TQMVSDGMTGSNPVSPASSSSPASSGAGGISPQHI 51
Query: 488 TEDLENNGSKKDGVCGPPPSKKMKLFGF 515
+D S DG GPP + L GF
Sbjct: 52 AQD-----SSLDGPPGPPDGATVPLEGF 74
>gi|166295204 hypothetical protein LOC80127 [Homo sapiens]
Length = 529
Score = 32.7 bits (73), Expect = 1.3
Identities = 33/151 (21%), Positives = 69/151 (45%), Gaps = 16/151 (10%)
Query: 11 QQQQRPEDAEDGAEGGGKRGEAGWEGGYPEIVKENKLFE------HYYQELKIVPEGEWG 64
+ +++ ++ +D E R EG + + KE + +Q+ KI E E
Sbjct: 105 ETKEKAQEEKDKLEQKYTRQINELEGQFHQKAKEIGMIHTELKAVRQFQKRKIQVERE-- 162
Query: 65 QFMDALREPLPATLRITGYKSHAKEILHCLKNKYFKELEDLEVDGQKVEVPQPLSWYPEE 124
+D L+E L T RI +E L L++++F+E LE + +K + + E
Sbjct: 163 --LDDLKENLRNTERIH------QETLRRLESRFFEEKHRLEQEAEKKIIMLAERAHHEA 214
Query: 125 LAWHTNLSRKILRKSPHLEKFHQFLVSETES 155
+ + R + +++ +L+K + + ET++
Sbjct: 215 IVQLNDAGRNVFKENDYLQKALAYHLKETDA 245
>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 1 MGRRSR-----GRRLQQQQRPEDAEDGAEGGGKRG-EAGWEGGYPEIVKENK 46
+G R R GR ++++R E E G EGG KRG E G +GG VKE K
Sbjct: 209 IGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGG----VKERK 256
>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 1 MGRRSR-----GRRLQQQQRPEDAEDGAEGGGKRG-EAGWEGGYPEIVKENK 46
+G R R GR ++++R E E G EGG KRG E G +GG VKE K
Sbjct: 209 IGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGG----VKERK 256
>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 1 MGRRSR-----GRRLQQQQRPEDAEDGAEGGGKRG-EAGWEGGYPEIVKENK 46
+G R R GR ++++R E E G EGG KRG E G +GG VKE K
Sbjct: 209 IGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGG----VKERK 256
>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 32.3 bits (72), Expect = 1.7
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 10/52 (19%)
Query: 1 MGRRSR-----GRRLQQQQRPEDAEDGAEGGGKRG-EAGWEGGYPEIVKENK 46
+G R R GR ++++R E E G EGG KRG E G +GG VKE K
Sbjct: 209 IGERGREGGKEGREGRRKERKEGREGGREGGKKRGREEGRKGG----VKERK 256
>gi|54112401 calmodulin-binding transcription activator 1 [Homo
sapiens]
Length = 1673
Score = 32.0 bits (71), Expect = 2.2
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 448 ETRESTQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGS 496
E ++TQ SP ++ G +DP ++SP TG +A L + +
Sbjct: 350 EVPDTTQSSPVSISSGLNSDPDMVDSPVVTGVSGMAVASVMGSLSQSAT 398
>gi|27735131 amyotrophic lateral sclerosis 2 (juvenile) chromosome
region, candidate 13 [Homo sapiens]
Length = 345
Score = 31.6 bits (70), Expect = 2.9
Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 16/155 (10%)
Query: 412 ILPHHQNTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKL 471
++P ++TG F ++S+ ++ ++ K +E QL P D+ +G P +
Sbjct: 87 VIPITKSTGSRF------RNSVEGLNQEIEIIIKETGEKEE-QLIPQDIPDGHRAPPPLV 139
Query: 472 ESPSFTGTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFP 531
+ S T + DT+ + NN S+ V P + G +E P DD L
Sbjct: 140 QRSSSTRSIDTQTPGGADRGSNNSSRSQSV-SPTSFLTISNEGSEESP---CSADDLLVD 195
Query: 532 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKE 566
P +K + P+ T K YM +E
Sbjct: 196 PRDKENGNNSPLPKY-----ATSPKPNNSYMFKRE 225
>gi|28274705 family with sequence similarity 9, member A [Homo
sapiens]
Length = 332
Score = 31.6 bits (70), Expect = 2.9
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 11 QQQQRPEDAEDGAE-GGGKRGEAGWEGGYPEIVKENKLFEHYYQE 54
+++++ E+ E+G E GGG+ GE G GG E +E + E +E
Sbjct: 229 EEEEKEEEEEEGEEEGGGEEGEEGGGGGEGEETEEEEEEEEEEEE 273
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.2 bits (69), Expect = 3.8
Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 18/118 (15%)
Query: 418 NTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRESTQLSPADLTEGKPTDPSKLESPSFT 477
+TG + + + + P R+P+L+ ES SP D + G+ + +PS+T
Sbjct: 938 STGSYGHELDLGQGPDPSLDREPELE------MESLTGSPEDRSRGEHSSTLPASTPSYT 991
Query: 478 -GTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIE 534
GT T ++ ED +++ PS++ +L K+ PL P IE
Sbjct: 992 SGTSPTSLSSLEEDSDSS-----------PSRRQRLEEAKQQRKARHRSHGPLLPTIE 1038
>gi|14277690 hypothetical protein LOC9750 isoform 2 [Homo sapiens]
Length = 591
Score = 31.2 bits (69), Expect = 3.8
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 444 GKSAETRESTQLSPADLTEGKPTDPS-KLESPSFTGTGDTEIAHATEDLENNGSKKDGVC 502
GK+AE + LS +DL G S SPS + + I A +L + S+ +G+
Sbjct: 370 GKAAEEKMPLSLSFSDLPNGDCALTSHSTGSPSNSTNPEITITPAEFNLSSLASQNEGMD 429
Query: 503 GPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALDPSFPRMNLLTRTTEGKKRQLYM 562
+ G ++P + E+DP P P+ R + G +
Sbjct: 430 DTSSASSRNSLGEGQEPKSHLKEEDPEEP-------RKPASAPSEACRRQSSGAGAEHLF 482
Query: 563 VSKELRNVLLNNSEK 577
+ ++ LL SE+
Sbjct: 483 LENDVAEALLQESEE 497
>gi|164414421 hypothetical protein LOC9750 isoform 1 [Homo sapiens]
Length = 1068
Score = 31.2 bits (69), Expect = 3.8
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 8/135 (5%)
Query: 444 GKSAETRESTQLSPADLTEGKPTDPS-KLESPSFTGTGDTEIAHATEDLENNGSKKDGVC 502
GK+AE + LS +DL G S SPS + + I A +L + S+ +G+
Sbjct: 420 GKAAEEKMPLSLSFSDLPNGDCALTSHSTGSPSNSTNPEITITPAEFNLSSLASQNEGMD 479
Query: 503 GPPPSKKMKLFGFKEDPFVFIPEDDPLFPPIEKFYALDPSFPRMNLLTRTTEGKKRQLYM 562
+ G ++P + E+DP P P+ R + G +
Sbjct: 480 DTSSASSRNSLGEGQEPKSHLKEEDPEEP-------RKPASAPSEACRRQSSGAGAEHLF 532
Query: 563 VSKELRNVLLNNSEK 577
+ ++ LL SE+
Sbjct: 533 LENDVAEALLQESEE 547
>gi|169217315 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 30.8 bits (68), Expect = 4.9
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 480 GDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFV--------FIPEDDPLFP 531
GD ++A+ ++ G K+D G PPS F ++P F +D P +P
Sbjct: 1720 GDAKLANPVTTIQRAGGKQD---GQPPS-----LAFPQEPHPIERGTMVWFKFQDHPFWP 1771
Query: 532 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKV---- 587
+ K + R+ LL KR + + + L++ L+ EK K++ K
Sbjct: 1772 AVVKSVSNTDKTARVLLLEANLHHGKRGIQVPLRRLKH--LDCKEKEKLLKRAQKAYKQS 1829
Query: 588 --WC 589
WC
Sbjct: 1830 VNWC 1833
>gi|113430659 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2061
Score = 30.8 bits (68), Expect = 4.9
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 480 GDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFV--------FIPEDDPLFP 531
GD ++A+ ++ G K+D G PPS F ++P F +D P +P
Sbjct: 1720 GDAKLANPVTTIQRAGGKQD---GQPPS-----LAFPQEPHPIERGTMVWFKFQDHPFWP 1771
Query: 532 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKV---- 587
+ K + R+ LL KR + + + L++ L+ EK K++ K
Sbjct: 1772 AVVKSVSNTDKTARVLLLEANLHHGKRGIQVPLRRLKH--LDCKEKEKLLKRAQKAYKQS 1829
Query: 588 --WC 589
WC
Sbjct: 1830 VNWC 1833
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 30.8 bits (68), Expect = 4.9
Identities = 30/124 (24%), Positives = 51/124 (41%), Gaps = 24/124 (19%)
Query: 480 GDTEIAHATEDLENNGSKKDGVCGPPPSKKMKLFGFKEDPFV--------FIPEDDPLFP 531
GD ++A+ ++ G K+D G PPS F ++P F +D P +P
Sbjct: 1687 GDAKLANPVTTIQRAGGKQD---GQPPS-----LAFPQEPHPIERGTMVWFKFQDHPFWP 1738
Query: 532 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKV---- 587
+ K + R+ LL KR + + + L++ L+ EK K++ K
Sbjct: 1739 AVVKSVSNTDKTARVLLLEANLHHGKRGIQVPLRRLKH--LDCKEKEKLLKRAQKAYKQS 1796
Query: 588 --WC 589
WC
Sbjct: 1797 VNWC 1800
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.135 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,734,660
Number of Sequences: 37866
Number of extensions: 1617158
Number of successful extensions: 4989
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 4934
Number of HSP's gapped (non-prelim): 66
length of query: 767
length of database: 18,247,518
effective HSP length: 110
effective length of query: 657
effective length of database: 14,082,258
effective search space: 9252043506
effective search space used: 9252043506
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.